Genetic variability in genotypes of safflower via SSR molecular marker

ABSTRACT The safflower is an oleaginous plant belonging to the Asteraceae family. It is used as a raw material for various purposes. These plants are popular for the quality and quantity of oil produced and, and thus, studying their genetic variability using markers is necessary for determining gene...

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Bibliographic Details
Published in:Ciência e agrotecnologia 2023, Vol.47
Main Authors: Oliveira, Altacis Junior de, Barelli, Marco Antonio Aparecido, Oliveira, Taniele Carvalho de, Sander, Nilo Leal, Azevedo, Rafhael Felipin, Silva, Claudete Rosa da
Format: Article
Language:eng ; por
Subjects:
AGRICULTURE, MULTIDISCIPLINARY
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Summary:ABSTRACT The safflower is an oleaginous plant belonging to the Asteraceae family. It is used as a raw material for various purposes. These plants are popular for the quality and quantity of oil produced and, and thus, studying their genetic variability using markers is necessary for determining genetic resources to conduct breeding programs. Therefore, we evaluated the genetic variability of safflower genotypes using Simple Sequence Repeat (SSR) molecular markers. The study was conducted at the State University of Mato Grosso “Carlos Alberto Reyes Maldonado”, in the Campus of Cáceres-MT. In total, 121 safflower genotypes from the Germplasm collection were evaluated using 21 SSR markers. The programs GenAlEx 6.5, GENES, and Structure were used to analyze the data. We identified 158 alleles at 21 loci among the genotypes. The expected heterozygosity (He) was high (0.551 - 0.804), but the observed heterozygosity (Ho) was low (0.000 - 0.502), and the indices of the endogamy coefficient (F) were positive in all loci and all populations, with an overall average of 0.958. The genetic differentiation (FST) values among populations were low, with an average of 0.010, which suggested a low population structure. The modified Tocher clustering and the UPGMA hierarchical clustering yielded 19 and 15 distinct groups, respectively. The genetic structure showed two populations, with few intermixes in the genome. The evaluated safflower genotypes showed genetic variability, and these genetically different variants might be used in breeding programs to obtain cultivars adapted to Brazil. RESUMO O cártamo é uma oleaginosa da família Asteraceae, cuja matéria-prima serve para diversos fins. A cultura se destaca pela qualidade e quantidade de óleo produzido, neste sentido o estudo da variabilidade genética com o uso de marcadores é uma etapa inicial na exploração dos recursos genéticos em um programa de melhoramento. Diante disso, estimou-se a variabilidade genética de genótipos de cártamo via marcadores moleculares Simple Sequence Repetition (SSR). O estudo foi conduzido na Universidade Estadual de Mato Grosso “Carlos Alberto Reyes Maldonado”, Campus de Cáceres-MT, onde foram avaliados 121 genótipos de cártamo da coleção de Germoplasma, utilizando 21 marcadores SSR. Foram utilizados os programas GenAlEx 6.5, GENES e software Structure para os respectivos resultados. O número de alelos detectados entre os genótipos considerando os 21 loci foi de 158, a He pode ser considerada a
ISSN:1413-7054
1981-1829
1981-1829
DOI:10.1590/1413-7054202347011922