LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline

We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for...

Full description

Saved in:
Bibliographic Details
Published in:Microbiology resource announcements 2021-07, Vol.10 (29), p.e0043921-e0043921
Main Authors: Almutairi, Hatim, Urbaniak, Michael D, Bates, Michelle D, Jariyapan, Narissara, Kwakye-Nuako, Godwin, Thomaz-Soccol, Vanete, Al-Salem, Waleed S, Dillon, Rod J, Bates, Paul A, Gatherer, Derek
Format: Article
Language:English
Subjects:
Genomics and Proteomics
Protocols and Workflows
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).
ISSN:2576-098X
2576-098X
DOI:10.1128/MRA.00439-21