BnPIR: Brassica napus pan‐genome information resource for 1689 accessions

[...]we collected re‐sequencing data of 1688 rapeseed accessions with an average depth of 8× (Lu et al., 2019; Wang et al., 2018a, 2018b; Wu et al., 2019). Basic genetic information includes chromosomal location, coding sequence length, exon number, gene structure, alternative splicing, nucleic acid...

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Bibliographic Details
Published in:Plant biotechnology journal 2021-03, Vol.19 (3), p.412-414
Main Authors: Song, Jia‐Ming, Liu, Dong‐Xu, Xie, Wen‐Zhao, Yang, Zhiquan, Guo, Liang, Liu, Kede, Yang, Qing‐Yong, Chen, Ling‐Ling
Format: Article
Language:English
Subjects:
Alternative splicing
Amino acid sequence
Brassica
Brassica napus
Brassica napus - genetics
Brassica rapa - genetics
Brief Communication
Brief Communications
Chromosomes
Conflicts of interest
Gene expression
gene index
Genome, Plant - genetics
Genomes
Genomics
homolog
Information resources
Information sources
Metabolism
Nucleic acids
Oilseeds
pan‐genome
Phylogenetics
presence/absence variations (PAVs)
Proteins
Rape plants
Rapeseed
rapeseed population
Search engines
Splicing
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Summary:[...]we collected re‐sequencing data of 1688 rapeseed accessions with an average depth of 8× (Lu et al., 2019; Wang et al., 2018a, 2018b; Wu et al., 2019). Basic genetic information includes chromosomal location, coding sequence length, exon number, gene structure, alternative splicing, nucleic acid sequence, the encoded protein sequence, expression data, gene ontology, functional domain, gene classification (core/distributed), frequency in subspecies. (Figure 1f). [...]users can access the Gbrowse (https://www.gbrowse.org/) to visualize detailed gene context and upstream/downstream features (Figure 1g).
ISSN:1467-7644
1467-7652
DOI:10.1111/pbi.13491