PDBsum: Structural summaries of PDB entries

PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image‐based and include protein secondary structure, protein‐ligand and protein‐DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structu...

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Bibliographic Details
Published in:Protein science 2018-01, Vol.27 (1), p.129-134
Main Authors: Laskowski, Roman A., Jabłońska, Jagoda, Pravda, Lukáš, Vařeková, Radka Svobodová, Thornton, Janet M.
Format: Article
Language:English
Subjects:
3D protein structure
Data processing
Deoxyribonucleic acid
DNA
DNA structure
enzymes
Internet
molecular interactions
PDB
PDBsum
protein database
Protein structure
protein structure analysis
Proteins
schematic diagrams
Secondary structure
Servers
Tools for Protein Science
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Description
Summary:PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image‐based and include protein secondary structure, protein‐ligand and protein‐DNA interactions, PROCHECK analyses of structural quality, and many others. The 3D structures can be viewed interactively in RasMol, PyMOL, and a JavaScript viewer called 3Dmol.js. Users can upload their own PDB files and obtain a set of password‐protected PDBsum analyses for each. The server is freely accessible to all at: http://www.ebi.ac.uk/pdbsum.
ISSN:0961-8368
1469-896X
DOI:10.1002/pro.3289