Plant snoRNA database

The Plant snoRNA database (http://www.scri.sari.ac.uk/plant_snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization...

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Bibliographic Details
Published in:Nucleic acids research 2003-01, Vol.31 (1), p.432-435
Main Authors: Brown, John W. S., Echeverria, Manuel, Qu, Liang-Hu, Lowe, Todd M., Bachellerie, Jean-Pierre, Hüttenhofer, Alexander, Kastenmayer, James P., Green, Pamela J., Shaw, Paul, Marshall, Dave F.
Format: Article
Language:English
Subjects:
Arabidopsis - genetics
Databases, Nucleic Acid
Genes, Plant
RNA, Plant - chemistry
RNA, Plant - genetics
RNA, Plant - metabolism
RNA, Small Nucleolar - chemistry
RNA, Small Nucleolar - genetics
RNA, Small Nucleolar - metabolism
Sequence Alignment
Terminology as Topic
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Description
Summary:The Plant snoRNA database (http://www.scri.sari.ac.uk/plant_snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization (polycistronic, single gene and intronic) and the number of gene variants. The Arabidopsis information is divided into box C/D and box H/ACA snoRNAs, and within each of these groups, by target sites in rRNA, snRNA or unknown. Alignments of orthologous genes and gene variants from different plant species are available for many snoRNA genes. Plant snoRNA genes have been given a standard nomenclature, designed wherever possible, to provide a consistent identity with yeast and human orthologues.
ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gkg009