Inclusion of Control Data in Fits to Concentration–Response Curves Improves Estimates of Half-Maximal Concentrations

Concentration–response curves, in which the effect of varying the concentration on the response of an assay is measured, are widely used to evaluate biological effects of chemical compounds. While National Center for Advancing Translational Sciences guidelines specify that readouts should be normali...

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Bibliographic Details
Published in:Journal of medicinal chemistry 2023-09, Vol.66 (18), p.12751-12761
Main Authors: La, Van Ngoc Thuy, Nicholson, Stanley, Haneef, Amna, Kang, Lulu, Minh, David D. L.
Format: Article
Language:English
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Summary:Concentration–response curves, in which the effect of varying the concentration on the response of an assay is measured, are widely used to evaluate biological effects of chemical compounds. While National Center for Advancing Translational Sciences guidelines specify that readouts should be normalized by the controls, recommended statistical analyses do not explicitly fit to the control data. Here, we introduce a nonlinear regression procedure based on maximum likelihood estimation that determines parameters for the classical Hill equation by fitting the model to both the curve and the control data. Simulations show that the proposed procedure provides more precise parameters compared with previously prescribed practices. Analysis of enzymatic inhibition data from the COVID Moonshot demonstrates that the proposed procedure yields a lower asymptotic standard error for estimated parameters. Benefits are most evident in the analysis of the incomplete curves. We also find that Lenth’s outlier detection method appears to determine parameters more precisely.
ISSN:0022-2623
1520-4804
1520-4804
DOI:10.1021/acs.jmedchem.3c00107