Epigenetic modification of the hypothalamic–pituitary–adrenal (HPA) axis during development in the house sparrow (Passer domesticus)

•DNA methylation of HPA genes change dynamically over development.•Nestlings born earlier in the season had higher initial DNA methylation at hatching.•Differentially methylated regions in HPA genes predicted growth patterns. Epigenetic modifications such as DNA methylation are important mechanisms...

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Bibliographic Details
Published in:General and comparative endocrinology 2023-09, Vol.341, p.114336-114336, Article 114336
Main Authors: Siller Wilks, Stefanie J., Westneat, David F., Heidinger, Britt J., Solomon, Joseph, Rubenstein, Dustin R.
Format: Article
Language:English
Subjects:
Development
Developmental plasticity
DNA methylation
Epigenetics
HPA axis
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Summary:•DNA methylation of HPA genes change dynamically over development.•Nestlings born earlier in the season had higher initial DNA methylation at hatching.•Differentially methylated regions in HPA genes predicted growth patterns. Epigenetic modifications such as DNA methylation are important mechanisms for mediating developmental plasticity, where ontogenetic processes and their phenotypic outcomes are shaped by early environments. In particular, changes in DNA methylation of genes within the hypothalamic–pituitary–adrenal (HPA) axis can impact offspring growth and development. This relationship has been well documented in mammals but is less understood in other taxa. Here, we use target-enriched enzymatic methyl sequencing (TEEM-seq) to assess how DNA methylation in a suite of 25 genes changes over development, how these modifications relate to the early environment, and how they predict differential growth trajectories in the house sparrow (Passer domesticus). We found that DNA methylation changes dynamically over the postnatal developmental period: genes with initially low DNA methylation tended to decline in methylation over development, whereas genes with initially high DNA methylation tended to increase in methylation. However, sex-specific differentially methylated regions (DMRs) were maintained across the developmental period. We also found significant differences in post-hatching DNA methylation in relation to hatch date, with higher levels of DNA methylation in nestlings hatched earlier in the season. Although these differences were largely absent by the end of development, a number of DMRs in HPA-related genes (CRH, MC2R, NR3C1, NR3C2, POMC)—and to a lesser degree HPG-related genes (GNRHR2)—predicted nestling growth trajectories over development. These findings provide insight into the mechanisms by which the early environment shapes DNA methylation in the HPA axis, and how these changes subsequently influence growth and potentially mediate developmental plasticity.
ISSN:0016-6480
1095-6840
DOI:10.1016/j.ygcen.2023.114336