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Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing
Purpose To develop and validate a method for acquiring helium‐3 (3He) and proton (1H) three‐dimensional (3D) image sets of the human lung with isotropic spatial resolution within a 10‐s breath‐hold by using compressed sensing (CS) acceleration, and to assess the fidelity of undersampled images compa...
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| Published in: | Magnetic resonance in medicine 2015-10, Vol.74 (4), p.1110-1115 |
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| Main Authors: | , , , , , , , , , , , |
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| container_end_page | 1115 |
| container_issue | 4 |
| container_start_page | 1110 |
| container_title | Magnetic resonance in medicine |
| container_volume | 74 |
| creator | Qing, Kun Altes, Talissa A. Tustison, Nicholas J. Feng, Xue Chen, Xiao Mata, Jaime F. Miller, G. Wilson de Lange, Eduard E. Tobias, William A. Cates Jr, Gordon D. Brookeman, James R. Mugler III, John P. |
| description | Purpose
To develop and validate a method for acquiring helium‐3 (3He) and proton (1H) three‐dimensional (3D) image sets of the human lung with isotropic spatial resolution within a 10‐s breath‐hold by using compressed sensing (CS) acceleration, and to assess the fidelity of undersampled images compared with fully sampled images.
Methods
The undersampling scheme for CS acceleration was optimized and tested using 3He ventilation data. Rapid 3D acquisition of both 3He and 1H data during one breath‐hold was then implemented, based on a balanced steady‐state free‐precession pulse sequence, by random undersampling of k‐space with reconstruction by means of minimizing the L1 norm and total variance. CS‐reconstruction fidelity was evaluated quantitatively by comparing fully sampled and retrospectively undersampled image sets.
Results
Helium‐3 and 1H 3D image sets of the lung with isotropic 3.9‐mm resolution were acquired during a single breath‐hold in 12 s and 8 s using acceleration factors of 2 and 3, respectively. Comparison of fully sampled and retrospectively undersampled 3He and 1H images yielded mean absolute errors 0.9.
Conclusion
By randomly undersampling k‐space and using CS reconstruction, high‐quality 3He and 1H 3D image sets with isotropic 3.9‐mm resolution can be acquired within an 8‐s breath‐hold. Magn Reson Med 74:1110–1115, 2015. © 2014 Wiley Periodicals, Inc. |
| doi_str_mv | 10.1002/mrm.25499 |
| format | article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1722172312</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1713945196</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5299-ab4c039275d1c3bc388e4bbc1cafd1695cfb3186fae8953590c029b367810b053</originalsourceid><addsrcrecordid>eNqNkc1u1DAUhS0EokNhwQsgS2xgkda_SbxEU1oQU5AKqIiNZTs3E5c4mdqJ2r4Bj42n03aBhMTiytLRd46u70HoJSUHlBB2GGI4YFIo9QgtqGSsYFKJx2hBKkEKTpXYQ89SuiCEKFWJp2iPSc4lqckC_T4zG99g4y5nn_zkxwGPLe6g93MoODZDgzdxnLI8dRGgaHyAIWXM9NgHswacYEpbz9QB7uZgBtzPwxr7ARuc_LDuAdsIZuqKbuwbPG817MawiZASNNk_bKXn6Elr-gQv7t599P34_bflh2L15eTj8t2qcJIpVRgrHOGKVbKhjlvH6xqEtY460za0VNK1ltO6bA3USnKpiCNMWV5WNSWWSL6P3uxy87cuZ0iTDj456HszwDgnTSvG8nDK_gOlXAlJVZnR13-hF-Mc85FuqbxtJQTN1Nsd5eKYUoRWb2I-YrzRlOhtkzo3qW-bzOyru8TZBmgeyPvqMnC4A658Dzf_TtKnZ6f3kcXO4dME1w8OE3_psuKV1OefT_TPo6_Hq-WPc_2J_wHmk7eI</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1712757441</pqid></control><display><type>article</type><title>Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing</title><source>Wiley-Blackwell Journals</source><creator>Qing, Kun ; Altes, Talissa A. ; Tustison, Nicholas J. ; Feng, Xue ; Chen, Xiao ; Mata, Jaime F. ; Miller, G. Wilson ; de Lange, Eduard E. ; Tobias, William A. ; Cates Jr, Gordon D. ; Brookeman, James R. ; Mugler III, John P.</creator><creatorcontrib>Qing, Kun ; Altes, Talissa A. ; Tustison, Nicholas J. ; Feng, Xue ; Chen, Xiao ; Mata, Jaime F. ; Miller, G. Wilson ; de Lange, Eduard E. ; Tobias, William A. ; Cates Jr, Gordon D. ; Brookeman, James R. ; Mugler III, John P.</creatorcontrib><description>Purpose
To develop and validate a method for acquiring helium‐3 (3He) and proton (1H) three‐dimensional (3D) image sets of the human lung with isotropic spatial resolution within a 10‐s breath‐hold by using compressed sensing (CS) acceleration, and to assess the fidelity of undersampled images compared with fully sampled images.
Methods
The undersampling scheme for CS acceleration was optimized and tested using 3He ventilation data. Rapid 3D acquisition of both 3He and 1H data during one breath‐hold was then implemented, based on a balanced steady‐state free‐precession pulse sequence, by random undersampling of k‐space with reconstruction by means of minimizing the L1 norm and total variance. CS‐reconstruction fidelity was evaluated quantitatively by comparing fully sampled and retrospectively undersampled image sets.
Results
Helium‐3 and 1H 3D image sets of the lung with isotropic 3.9‐mm resolution were acquired during a single breath‐hold in 12 s and 8 s using acceleration factors of 2 and 3, respectively. Comparison of fully sampled and retrospectively undersampled 3He and 1H images yielded mean absolute errors <10% and structural similarity indices >0.9.
Conclusion
By randomly undersampling k‐space and using CS reconstruction, high‐quality 3He and 1H 3D image sets with isotropic 3.9‐mm resolution can be acquired within an 8‐s breath‐hold. Magn Reson Med 74:1110–1115, 2015. © 2014 Wiley Periodicals, Inc.</description><identifier>ISSN: 0740-3194</identifier><identifier>EISSN: 1522-2594</identifier><identifier>DOI: 10.1002/mrm.25499</identifier><identifier>PMID: 25335080</identifier><identifier>CODEN: MRMEEN</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Adult ; Breath Holding ; compressed sensing ; Cystic Fibrosis ; Female ; Helium - administration & dosage ; Helium - chemistry ; Humans ; hyperpolarized gas ; Imaging, Three-Dimensional - methods ; Lung - physiology ; Magnetic Resonance Imaging - methods ; Male ; Protons ; pulmonary imaging ; Young Adult</subject><ispartof>Magnetic resonance in medicine, 2015-10, Vol.74 (4), p.1110-1115</ispartof><rights>2014 Wiley Periodicals, Inc.</rights><rights>2015 Wiley Periodicals, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5299-ab4c039275d1c3bc388e4bbc1cafd1695cfb3186fae8953590c029b367810b053</citedby><cites>FETCH-LOGICAL-c5299-ab4c039275d1c3bc388e4bbc1cafd1695cfb3186fae8953590c029b367810b053</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fmrm.25499$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fmrm.25499$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>315,786,790,27957,27958,50923,51032</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25335080$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Qing, Kun</creatorcontrib><creatorcontrib>Altes, Talissa A.</creatorcontrib><creatorcontrib>Tustison, Nicholas J.</creatorcontrib><creatorcontrib>Feng, Xue</creatorcontrib><creatorcontrib>Chen, Xiao</creatorcontrib><creatorcontrib>Mata, Jaime F.</creatorcontrib><creatorcontrib>Miller, G. Wilson</creatorcontrib><creatorcontrib>de Lange, Eduard E.</creatorcontrib><creatorcontrib>Tobias, William A.</creatorcontrib><creatorcontrib>Cates Jr, Gordon D.</creatorcontrib><creatorcontrib>Brookeman, James R.</creatorcontrib><creatorcontrib>Mugler III, John P.</creatorcontrib><title>Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing</title><title>Magnetic resonance in medicine</title><addtitle>Magn. Reson. Med</addtitle><description>Purpose
To develop and validate a method for acquiring helium‐3 (3He) and proton (1H) three‐dimensional (3D) image sets of the human lung with isotropic spatial resolution within a 10‐s breath‐hold by using compressed sensing (CS) acceleration, and to assess the fidelity of undersampled images compared with fully sampled images.
Methods
The undersampling scheme for CS acceleration was optimized and tested using 3He ventilation data. Rapid 3D acquisition of both 3He and 1H data during one breath‐hold was then implemented, based on a balanced steady‐state free‐precession pulse sequence, by random undersampling of k‐space with reconstruction by means of minimizing the L1 norm and total variance. CS‐reconstruction fidelity was evaluated quantitatively by comparing fully sampled and retrospectively undersampled image sets.
Results
Helium‐3 and 1H 3D image sets of the lung with isotropic 3.9‐mm resolution were acquired during a single breath‐hold in 12 s and 8 s using acceleration factors of 2 and 3, respectively. Comparison of fully sampled and retrospectively undersampled 3He and 1H images yielded mean absolute errors <10% and structural similarity indices >0.9.
Conclusion
By randomly undersampling k‐space and using CS reconstruction, high‐quality 3He and 1H 3D image sets with isotropic 3.9‐mm resolution can be acquired within an 8‐s breath‐hold. Magn Reson Med 74:1110–1115, 2015. © 2014 Wiley Periodicals, Inc.</description><subject>Adult</subject><subject>Breath Holding</subject><subject>compressed sensing</subject><subject>Cystic Fibrosis</subject><subject>Female</subject><subject>Helium - administration & dosage</subject><subject>Helium - chemistry</subject><subject>Humans</subject><subject>hyperpolarized gas</subject><subject>Imaging, Three-Dimensional - methods</subject><subject>Lung - physiology</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Male</subject><subject>Protons</subject><subject>pulmonary imaging</subject><subject>Young Adult</subject><issn>0740-3194</issn><issn>1522-2594</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNqNkc1u1DAUhS0EokNhwQsgS2xgkda_SbxEU1oQU5AKqIiNZTs3E5c4mdqJ2r4Bj42n03aBhMTiytLRd46u70HoJSUHlBB2GGI4YFIo9QgtqGSsYFKJx2hBKkEKTpXYQ89SuiCEKFWJp2iPSc4lqckC_T4zG99g4y5nn_zkxwGPLe6g93MoODZDgzdxnLI8dRGgaHyAIWXM9NgHswacYEpbz9QB7uZgBtzPwxr7ARuc_LDuAdsIZuqKbuwbPG817MawiZASNNk_bKXn6Elr-gQv7t599P34_bflh2L15eTj8t2qcJIpVRgrHOGKVbKhjlvH6xqEtY460za0VNK1ltO6bA3USnKpiCNMWV5WNSWWSL6P3uxy87cuZ0iTDj456HszwDgnTSvG8nDK_gOlXAlJVZnR13-hF-Mc85FuqbxtJQTN1Nsd5eKYUoRWb2I-YrzRlOhtkzo3qW-bzOyru8TZBmgeyPvqMnC4A658Dzf_TtKnZ6f3kcXO4dME1w8OE3_psuKV1OefT_TPo6_Hq-WPc_2J_wHmk7eI</recordid><startdate>201510</startdate><enddate>201510</enddate><creator>Qing, Kun</creator><creator>Altes, Talissa A.</creator><creator>Tustison, Nicholas J.</creator><creator>Feng, Xue</creator><creator>Chen, Xiao</creator><creator>Mata, Jaime F.</creator><creator>Miller, G. Wilson</creator><creator>de Lange, Eduard E.</creator><creator>Tobias, William A.</creator><creator>Cates Jr, Gordon D.</creator><creator>Brookeman, James R.</creator><creator>Mugler III, John P.</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>M7Z</scope><scope>P64</scope><scope>7X8</scope><scope>7QO</scope></search><sort><creationdate>201510</creationdate><title>Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing</title><author>Qing, Kun ; Altes, Talissa A. ; Tustison, Nicholas J. ; Feng, Xue ; Chen, Xiao ; Mata, Jaime F. ; Miller, G. Wilson ; de Lange, Eduard E. ; Tobias, William A. ; Cates Jr, Gordon D. ; Brookeman, James R. ; Mugler III, John P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5299-ab4c039275d1c3bc388e4bbc1cafd1695cfb3186fae8953590c029b367810b053</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Adult</topic><topic>Breath Holding</topic><topic>compressed sensing</topic><topic>Cystic Fibrosis</topic><topic>Female</topic><topic>Helium - administration & dosage</topic><topic>Helium - chemistry</topic><topic>Humans</topic><topic>hyperpolarized gas</topic><topic>Imaging, Three-Dimensional - methods</topic><topic>Lung - physiology</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Male</topic><topic>Protons</topic><topic>pulmonary imaging</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Qing, Kun</creatorcontrib><creatorcontrib>Altes, Talissa A.</creatorcontrib><creatorcontrib>Tustison, Nicholas J.</creatorcontrib><creatorcontrib>Feng, Xue</creatorcontrib><creatorcontrib>Chen, Xiao</creatorcontrib><creatorcontrib>Mata, Jaime F.</creatorcontrib><creatorcontrib>Miller, G. Wilson</creatorcontrib><creatorcontrib>de Lange, Eduard E.</creatorcontrib><creatorcontrib>Tobias, William A.</creatorcontrib><creatorcontrib>Cates Jr, Gordon D.</creatorcontrib><creatorcontrib>Brookeman, James R.</creatorcontrib><creatorcontrib>Mugler III, John P.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biochemistry Abstracts 1</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><jtitle>Magnetic resonance in medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Qing, Kun</au><au>Altes, Talissa A.</au><au>Tustison, Nicholas J.</au><au>Feng, Xue</au><au>Chen, Xiao</au><au>Mata, Jaime F.</au><au>Miller, G. Wilson</au><au>de Lange, Eduard E.</au><au>Tobias, William A.</au><au>Cates Jr, Gordon D.</au><au>Brookeman, James R.</au><au>Mugler III, John P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing</atitle><jtitle>Magnetic resonance in medicine</jtitle><addtitle>Magn. Reson. Med</addtitle><date>2015-10</date><risdate>2015</risdate><volume>74</volume><issue>4</issue><spage>1110</spage><epage>1115</epage><pages>1110-1115</pages><issn>0740-3194</issn><eissn>1522-2594</eissn><coden>MRMEEN</coden><notes>istex:C805BBDA5A13B98D580A2C0F785FB91CD780A77E</notes><notes>ArticleID:MRM25499</notes><notes>The National Heart, Lung, and Blood Institute of the National Institutes of Health - No. R01 HL079077</notes><notes>ark:/67375/WNG-ZDSFLCXW-K</notes><notes>Siemens Medical Solutions</notes><notes>ObjectType-Article-1</notes><notes>SourceType-Scholarly Journals-1</notes><notes>ObjectType-Feature-2</notes><notes>content type line 23</notes><abstract>Purpose
To develop and validate a method for acquiring helium‐3 (3He) and proton (1H) three‐dimensional (3D) image sets of the human lung with isotropic spatial resolution within a 10‐s breath‐hold by using compressed sensing (CS) acceleration, and to assess the fidelity of undersampled images compared with fully sampled images.
Methods
The undersampling scheme for CS acceleration was optimized and tested using 3He ventilation data. Rapid 3D acquisition of both 3He and 1H data during one breath‐hold was then implemented, based on a balanced steady‐state free‐precession pulse sequence, by random undersampling of k‐space with reconstruction by means of minimizing the L1 norm and total variance. CS‐reconstruction fidelity was evaluated quantitatively by comparing fully sampled and retrospectively undersampled image sets.
Results
Helium‐3 and 1H 3D image sets of the lung with isotropic 3.9‐mm resolution were acquired during a single breath‐hold in 12 s and 8 s using acceleration factors of 2 and 3, respectively. Comparison of fully sampled and retrospectively undersampled 3He and 1H images yielded mean absolute errors <10% and structural similarity indices >0.9.
Conclusion
By randomly undersampling k‐space and using CS reconstruction, high‐quality 3He and 1H 3D image sets with isotropic 3.9‐mm resolution can be acquired within an 8‐s breath‐hold. Magn Reson Med 74:1110–1115, 2015. © 2014 Wiley Periodicals, Inc.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>25335080</pmid><doi>10.1002/mrm.25499</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Magnetic resonance in medicine, 2015-10, Vol.74 (4), p.1110-1115 |
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| language | eng |
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| source | Wiley-Blackwell Journals |
| subjects | Adult Breath Holding compressed sensing Cystic Fibrosis Female Helium - administration & dosage Helium - chemistry Humans hyperpolarized gas Imaging, Three-Dimensional - methods Lung - physiology Magnetic Resonance Imaging - methods Male Protons pulmonary imaging Young Adult |
| title | Rapid acquisition of helium-3 and proton three-dimensional image sets of the human lung in a single breath-hold using compressed sensing |
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