The framework of applying vertex coloring method to identify genes associated with Alzheimer's diseases basing on gene expression

Alzheimer's disease (AD) is the most common form of dementia. One of the research topics is to identify the genes associated with AD through analyzing DNA microarray data by computation. Holding view of vertex coloring of graph theory, in this paper, a new clustering method named vertex colorin...

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Bibliographic Details
Main Authors: Ben-Qiong Hu, Xu Li, Jiang-Lin Zhou, Chao-Yang Pang
Format: Conference Proceeding
Language:English
Subjects:
Alzheimer' disease
Alzheimer's disease
Clustering algorithms
DNA Microarray Data
Educational institutions
Gene expression
Image color analysis
Proteins
Vertex coloring
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Summary:Alzheimer's disease (AD) is the most common form of dementia. One of the research topics is to identify the genes associated with AD through analyzing DNA microarray data by computation. Holding view of vertex coloring of graph theory, in this paper, a new clustering method named vertex coloring clustering (VCC) is presented. VCC is specified for gene clustering, which makes similar gene expression cluster tightly in same class and they share same gene characteristics or function. So, VCC can be also used to identify the genes associated with AD. Using VCC, 27 candidate AD genes are identified in this paper, and 5 genes agree with other men's study.
DOI:10.1109/GRC.2011.6122707