Raman spectroscopy based investigation of molecular changes associated with an early stage of dengue virus infection

Raman spectroscopy based investigations of the molecular changes associated with an early stage of dengue virus infection (DENV) using a partial least squares (PLS) regression model is presented. This study is based on non-structural protein 1 (NS1) which appears after three days of DENV infection....

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Bibliographic Details
Published in:Laser physics 2017-04, Vol.27 (4), p.45601
Main Authors: Bilal, Maria, Bilal, Muhammad, Saleem, Muhammad, Khurram, Muhammad, Khan, Saranjam, Ullah, Rahat, Ali, Hina, Ahmed, Mushtaq, Shahzada, Shaista, Khan, Ehsan Ullah
Format: Article
Language:English
Subjects:
early detection of dengue virus infection
multivariate analysis
non-structural protein 1 (NS1)
PLS regression
Raman spectroscopy
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Summary:Raman spectroscopy based investigations of the molecular changes associated with an early stage of dengue virus infection (DENV) using a partial least squares (PLS) regression model is presented. This study is based on non-structural protein 1 (NS1) which appears after three days of DENV infection. In total, 39 blood sera samples were collected and divided into two groups. The control group contained samples which were the negative for NS1 and antibodies and the positive group contained those samples in which NS1 is positive and antibodies were negative. Out of 39 samples, 29 Raman spectra were used for the model development while the remaining 10 were kept hidden for blind testing of the model. PLS regression yielded a vector of regression coefficients as a function of Raman shift, which were analyzed. Cytokines in the region 775-875 cm−1, lectins at 1003, 1238, 1340, 1449 and 1672 cm−1, DNA in the region 1040-1140 cm−1 and alpha and beta structures of proteins in the region 933-967 cm−1 have been identified in the regression vector for their role in an early stage of DENV infection. Validity of the model was established by its R-square value of 0.891. Sensitivity, specificity and accuracy were 100% each and the area under the receiver operator characteristic curve was found to be 1.
ISSN:1054-660X
1555-6611
DOI:10.1088/1555-6611/aa5a94