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The European Nucleotide Archive in 2018
Abstract The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the g...
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| Published in: | Nucleic acids research 2019-01, Vol.47 (D1), p.D84-D88 |
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| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , |
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| cites | cdi_FETCH-LOGICAL-c412t-b0cc3fd7cdf232b28df61f29d7508190b6daf38fa90a08d84e606024f5504ab53 |
| container_end_page | D88 |
| container_issue | D1 |
| container_start_page | D84 |
| container_title | Nucleic acids research |
| container_volume | 47 |
| creator | Harrison, Peter W Alako, Blaise Amid, Clara Cerdeño-Tárraga, Ana Cleland, Iain Holt, Sam Hussein, Abdulrahman Jayathilaka, Suran Kay, Simon Keane, Thomas Leinonen, Rasko Liu, Xin Martínez-Villacorta, Josué Milano, Annalisa Pakseresht, Nima Rajan, Jeena Reddy, Kethi Richards, Edward Rosello, Marc Silvester, Nicole Smirnov, Dmitriy Toribio, Ana-Luisa Vijayaraja, Senthilnathan Cochrane, Guy |
| description | Abstract
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the global research effort. Here, we outline ENA services and content in 2018 and provide an overview of a selection of focus areas of development work: extending data coordination services around ENA, sequence submissions through template expansion, early pre-submission validation tools and our move towards a new browser and retrieval infrastructure. |
| doi_str_mv | 10.1093/nar/gky1078 |
| format | article |
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The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the global research effort. Here, we outline ENA services and content in 2018 and provide an overview of a selection of focus areas of development work: extending data coordination services around ENA, sequence submissions through template expansion, early pre-submission validation tools and our move towards a new browser and retrieval infrastructure.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gky1078</identifier><identifier>PMID: 30395270</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Computational Biology - methods ; Database Issue ; Databases, Nucleic Acid ; Europe ; Genome ; Genomics - methods ; Humans ; Molecular Sequence Annotation ; Search Engine ; Software ; Transcriptome ; User-Computer Interface ; Web Browser</subject><ispartof>Nucleic acids research, 2019-01, Vol.47 (D1), p.D84-D88</ispartof><rights>The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-b0cc3fd7cdf232b28df61f29d7508190b6daf38fa90a08d84e606024f5504ab53</citedby><cites>FETCH-LOGICAL-c412t-b0cc3fd7cdf232b28df61f29d7508190b6daf38fa90a08d84e606024f5504ab53</cites><orcidid>0000-0002-4007-2899 ; 0000-0002-6625-894X ; 0000-0001-7954-7057 ; 0000-0002-2639-7187</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323982/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323982/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,733,786,790,891,1591,27957,27958,53827,53829</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30395270$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Harrison, Peter W</creatorcontrib><creatorcontrib>Alako, Blaise</creatorcontrib><creatorcontrib>Amid, Clara</creatorcontrib><creatorcontrib>Cerdeño-Tárraga, Ana</creatorcontrib><creatorcontrib>Cleland, Iain</creatorcontrib><creatorcontrib>Holt, Sam</creatorcontrib><creatorcontrib>Hussein, Abdulrahman</creatorcontrib><creatorcontrib>Jayathilaka, Suran</creatorcontrib><creatorcontrib>Kay, Simon</creatorcontrib><creatorcontrib>Keane, Thomas</creatorcontrib><creatorcontrib>Leinonen, Rasko</creatorcontrib><creatorcontrib>Liu, Xin</creatorcontrib><creatorcontrib>Martínez-Villacorta, Josué</creatorcontrib><creatorcontrib>Milano, Annalisa</creatorcontrib><creatorcontrib>Pakseresht, Nima</creatorcontrib><creatorcontrib>Rajan, Jeena</creatorcontrib><creatorcontrib>Reddy, Kethi</creatorcontrib><creatorcontrib>Richards, Edward</creatorcontrib><creatorcontrib>Rosello, Marc</creatorcontrib><creatorcontrib>Silvester, Nicole</creatorcontrib><creatorcontrib>Smirnov, Dmitriy</creatorcontrib><creatorcontrib>Toribio, Ana-Luisa</creatorcontrib><creatorcontrib>Vijayaraja, Senthilnathan</creatorcontrib><creatorcontrib>Cochrane, Guy</creatorcontrib><title>The European Nucleotide Archive in 2018</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>Abstract
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the global research effort. 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Alako, Blaise ; Amid, Clara ; Cerdeño-Tárraga, Ana ; Cleland, Iain ; Holt, Sam ; Hussein, Abdulrahman ; Jayathilaka, Suran ; Kay, Simon ; Keane, Thomas ; Leinonen, Rasko ; Liu, Xin ; Martínez-Villacorta, Josué ; Milano, Annalisa ; Pakseresht, Nima ; Rajan, Jeena ; Reddy, Kethi ; Richards, Edward ; Rosello, Marc ; Silvester, Nicole ; Smirnov, Dmitriy ; Toribio, Ana-Luisa ; Vijayaraja, Senthilnathan ; Cochrane, Guy</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c412t-b0cc3fd7cdf232b28df61f29d7508190b6daf38fa90a08d84e606024f5504ab53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Computational Biology - methods</topic><topic>Database Issue</topic><topic>Databases, Nucleic Acid</topic><topic>Europe</topic><topic>Genome</topic><topic>Genomics - methods</topic><topic>Humans</topic><topic>Molecular Sequence Annotation</topic><topic>Search Engine</topic><topic>Software</topic><topic>Transcriptome</topic><topic>User-Computer Interface</topic><topic>Web Browser</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Harrison, Peter W</creatorcontrib><creatorcontrib>Alako, Blaise</creatorcontrib><creatorcontrib>Amid, Clara</creatorcontrib><creatorcontrib>Cerdeño-Tárraga, Ana</creatorcontrib><creatorcontrib>Cleland, Iain</creatorcontrib><creatorcontrib>Holt, Sam</creatorcontrib><creatorcontrib>Hussein, Abdulrahman</creatorcontrib><creatorcontrib>Jayathilaka, Suran</creatorcontrib><creatorcontrib>Kay, Simon</creatorcontrib><creatorcontrib>Keane, Thomas</creatorcontrib><creatorcontrib>Leinonen, Rasko</creatorcontrib><creatorcontrib>Liu, Xin</creatorcontrib><creatorcontrib>Martínez-Villacorta, Josué</creatorcontrib><creatorcontrib>Milano, Annalisa</creatorcontrib><creatorcontrib>Pakseresht, Nima</creatorcontrib><creatorcontrib>Rajan, Jeena</creatorcontrib><creatorcontrib>Reddy, Kethi</creatorcontrib><creatorcontrib>Richards, Edward</creatorcontrib><creatorcontrib>Rosello, Marc</creatorcontrib><creatorcontrib>Silvester, Nicole</creatorcontrib><creatorcontrib>Smirnov, Dmitriy</creatorcontrib><creatorcontrib>Toribio, Ana-Luisa</creatorcontrib><creatorcontrib>Vijayaraja, Senthilnathan</creatorcontrib><creatorcontrib>Cochrane, Guy</creatorcontrib><collection>Oxford Journals Open Access Collection</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Harrison, Peter W</au><au>Alako, Blaise</au><au>Amid, Clara</au><au>Cerdeño-Tárraga, Ana</au><au>Cleland, Iain</au><au>Holt, Sam</au><au>Hussein, Abdulrahman</au><au>Jayathilaka, Suran</au><au>Kay, Simon</au><au>Keane, Thomas</au><au>Leinonen, Rasko</au><au>Liu, Xin</au><au>Martínez-Villacorta, Josué</au><au>Milano, Annalisa</au><au>Pakseresht, Nima</au><au>Rajan, Jeena</au><au>Reddy, Kethi</au><au>Richards, Edward</au><au>Rosello, Marc</au><au>Silvester, Nicole</au><au>Smirnov, Dmitriy</au><au>Toribio, Ana-Luisa</au><au>Vijayaraja, Senthilnathan</au><au>Cochrane, Guy</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The European Nucleotide Archive in 2018</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2019-01-08</date><risdate>2019</risdate><volume>47</volume><issue>D1</issue><spage>D84</spage><epage>D88</epage><pages>D84-D88</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><notes>ObjectType-Article-1</notes><notes>SourceType-Scholarly Journals-1</notes><notes>ObjectType-Feature-2</notes><notes>content type line 23</notes><notes>Present address: Peter W Harrison, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.</notes><abstract>Abstract
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the global research effort. Here, we outline ENA services and content in 2018 and provide an overview of a selection of focus areas of development work: extending data coordination services around ENA, sequence submissions through template expansion, early pre-submission validation tools and our move towards a new browser and retrieval infrastructure.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>30395270</pmid><doi>10.1093/nar/gky1078</doi><orcidid>https://orcid.org/0000-0002-4007-2899</orcidid><orcidid>https://orcid.org/0000-0002-6625-894X</orcidid><orcidid>https://orcid.org/0000-0001-7954-7057</orcidid><orcidid>https://orcid.org/0000-0002-2639-7187</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0305-1048 |
| ispartof | Nucleic acids research, 2019-01, Vol.47 (D1), p.D84-D88 |
| issn | 0305-1048 1362-4962 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_6323982 |
| source | Open Access: PubMed Central; Oxford Journals Online |
| subjects | Computational Biology - methods Database Issue Databases, Nucleic Acid Europe Genome Genomics - methods Humans Molecular Sequence Annotation Search Engine Software Transcriptome User-Computer Interface Web Browser |
| title | The European Nucleotide Archive in 2018 |
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