Regulation of alternative splicing by the circadian clock and food related cues

BACKGROUND: The circadian clock orchestrates daily rhythms in metabolism, physiology and behaviour that allow organisms to anticipate regular changes in their environment, increasing their adaptation. Such circadian phenotypes are underpinned by daily rhythms in gene expression. Little is known, how...

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Bibliographic Details
Published in:Genome biology 2012-06, Vol.13 (6), p.R54-R54
Main Authors: McGlincy, Nicholas J, Valomon, Amandine, Chesham, Johanna E, Maywood, Elizabeth S, Hastings, Michael H, Ule, Jernej
Format: Article
Language:English
Subjects:
Abundance
Adaptations
Alternative Splicing
Animals
binding proteins
Binding Sites
Circadian Clocks
circadian rhythm
Circadian rhythms
Cues
Exons
Fasting
Feeding
Feeding Behavior - physiology
Food
Food Deprivation - physiology
foods
Gene expression
Gene Expression Regulation
genes
Liver
Liver - cytology
Liver - metabolism
Liver - physiology
Male
Metabolism
Mice
Mice, Inbred C57BL
Motor Activity - genetics
Motor Activity - physiology
mutants
Mutation
Oligonucleotide Array Sequence Analysis
Phenotype
Post-transcription
protein synthesis
Receptors, Vasoactive Intestinal Peptide, Type II - genetics
Receptors, Vasoactive Intestinal Peptide, Type II - metabolism
RNA-binding protein
temporal variation
Transcription
Transcription, Genetic
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Summary:BACKGROUND: The circadian clock orchestrates daily rhythms in metabolism, physiology and behaviour that allow organisms to anticipate regular changes in their environment, increasing their adaptation. Such circadian phenotypes are underpinned by daily rhythms in gene expression. Little is known, however, about the contribution of post-transcriptional processes, particularly alternative splicing. RESULTS: Using Affymetrix mouse exon-arrays, we identified exons with circadian alternative splicing in the liver. Validated circadian exons were regulated in a tissue-dependent manner and were present in genes with circadian transcript abundance. Furthermore, an analysis of circadian mutant Vipr2 -/- mice revealed the existence of distinct physiological pathways controlling circadian alternative splicing and RNA binding protein expression, with contrasting dependence on Vipr2-mediated physiological signals. This view was corroborated by the analysis of the effect of fasting on circadian alternative splicing. Feeding is an important circadian stimulus, and we found that fasting both modulates hepatic circadian alternative splicing in an exon-dependent manner and changes the temporal relationship with transcript-level expression. CONCLUSIONS: The circadian clock regulates alternative splicing in a manner that is both tissue-dependent and concurrent with circadian transcript abundance. This adds a novel temporal dimension to the regulation of mammalian alternative splicing. Moreover, our results demonstrate that circadian alternative splicing is regulated by the interaction between distinct physiological cues, and illustrates the capability of single genes to integrate circadian signals at different levels of regulation.
ISSN:1465-6906
1465-6914
1474-760X
DOI:10.1186/gb-2012-13-6-r54