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Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm)
Plants adapt to the environment by either long-term genome evolution or by acclimatization processes where the cellular processes and metabolism of the plant are adjusted within the existing potential in the genome. Here we studied the adaptation strategies in date palm, Phoenix dactylifera, under m...
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| Published in: | PloS one 2017-06, Vol.12 (6), p.e0177883-e0177883 |
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| creator | Safronov, Omid Kreuzwieser, Jürgen Haberer, Georg Alyousif, Mohamed S Schulze, Waltraud Al-Harbi, Naif Arab, Leila Ache, Peter Stempfl, Thomas Kruse, Joerg Mayer, Klaus X Hedrich, Rainer Rennenberg, Heinz Salojärvi, Jarkko Kangasjärvi, Jaakko |
| description | Plants adapt to the environment by either long-term genome evolution or by acclimatization processes where the cellular processes and metabolism of the plant are adjusted within the existing potential in the genome. Here we studied the adaptation strategies in date palm, Phoenix dactylifera, under mild heat, drought and combined heat and drought by transcriptomic and metabolomic profiling. In transcriptomics data, combined heat and drought resembled heat response, whereas in metabolomics data it was more similar to drought. In both conditions, soluble carbohydrates, such as fucose, and glucose derivatives, were increased, suggesting a switch to carbohydrate metabolism and cell wall biogenesis. This result is consistent with the evidence from transcriptomics and cis-motif analysis. In addition, transcriptomics data showed transcriptional activation of genes related to reactive oxygen species in all three conditions (drought, heat, and combined heat and drought), suggesting increased activity of enzymatic antioxidant systems in cytosol, chloroplast and peroxisome. Finally, the genes that were differentially expressed in heat and combined heat and drought stresses were significantly enriched for circadian and diurnal rhythm motifs, suggesting new stress avoidance strategies. |
| doi_str_mv | 10.1371/journal.pone.0177883 |
| format | article |
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Here we studied the adaptation strategies in date palm, Phoenix dactylifera, under mild heat, drought and combined heat and drought by transcriptomic and metabolomic profiling. In transcriptomics data, combined heat and drought resembled heat response, whereas in metabolomics data it was more similar to drought. In both conditions, soluble carbohydrates, such as fucose, and glucose derivatives, were increased, suggesting a switch to carbohydrate metabolism and cell wall biogenesis. This result is consistent with the evidence from transcriptomics and cis-motif analysis. In addition, transcriptomics data showed transcriptional activation of genes related to reactive oxygen species in all three conditions (drought, heat, and combined heat and drought), suggesting increased activity of enzymatic antioxidant systems in cytosol, chloroplast and peroxisome. Finally, the genes that were differentially expressed in heat and combined heat and drought stresses were significantly enriched for circadian and diurnal rhythm motifs, suggesting new stress avoidance strategies.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0177883</identifier><identifier>PMID: 28570677</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Abiotic stress ; Abscisic acid ; Acclimatization ; Activation analysis ; Adaptation ; Adjustment ; Antioxidants - metabolism ; Avoidance ; Biological evolution ; Biology ; Biology and Life Sciences ; Biophysics ; Biosynthesis ; Carbohydrate metabolism ; Carbohydrates ; Cell walls ; Circadian rhythms ; Cytosol ; Date (Fruit) ; Derivatives ; Diurnal ; Drought ; Droughts ; Ecology and Environmental Sciences ; Enrichment ; Environmental aspects ; Environmental health ; Evolution ; Fucose ; Gene expression ; Genes ; Genes, Plant ; Genomes ; Glucose ; Heat ; Heat shock proteins ; Hot Temperature ; Metabolism ; Metabolomics ; Oxygen ; Phoeniceae - genetics ; Phoeniceae - metabolism ; Phoeniceae - physiology ; Phoenix dactylifera ; Physical Sciences ; Physiology ; Plant hardiness ; Plant heat tolerance ; Plants (botany) ; Profiling ; Reactive oxygen species ; Reactive Oxygen Species - metabolism ; Research and Analysis Methods ; Rhythm ; Stress ; Stress, Physiological ; Stresses ; Transcription activation</subject><ispartof>PloS one, 2017-06, Vol.12 (6), p.e0177883-e0177883</ispartof><rights>COPYRIGHT 2017 Public Library of Science</rights><rights>2017 Safronov et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2017 Safronov et al 2017 Safronov et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-f5ddb4f8a40fe1ba3fd7c0519e87f60f764981f7d465bee7bd20f13b95e2fb3e3</citedby><cites>FETCH-LOGICAL-c692t-f5ddb4f8a40fe1ba3fd7c0519e87f60f764981f7d465bee7bd20f13b95e2fb3e3</cites><orcidid>0000-0002-8959-1809</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1904976261/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1904976261?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,315,733,786,790,891,25783,27957,27958,37047,37048,44625,53827,53829,75483</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28570677$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Mahalingam, Ramamurthy</contributor><creatorcontrib>Safronov, Omid</creatorcontrib><creatorcontrib>Kreuzwieser, Jürgen</creatorcontrib><creatorcontrib>Haberer, Georg</creatorcontrib><creatorcontrib>Alyousif, Mohamed S</creatorcontrib><creatorcontrib>Schulze, Waltraud</creatorcontrib><creatorcontrib>Al-Harbi, Naif</creatorcontrib><creatorcontrib>Arab, Leila</creatorcontrib><creatorcontrib>Ache, Peter</creatorcontrib><creatorcontrib>Stempfl, Thomas</creatorcontrib><creatorcontrib>Kruse, Joerg</creatorcontrib><creatorcontrib>Mayer, Klaus X</creatorcontrib><creatorcontrib>Hedrich, Rainer</creatorcontrib><creatorcontrib>Rennenberg, Heinz</creatorcontrib><creatorcontrib>Salojärvi, Jarkko</creatorcontrib><creatorcontrib>Kangasjärvi, Jaakko</creatorcontrib><title>Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm)</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Plants adapt to the environment by either long-term genome evolution or by acclimatization processes where the cellular processes and metabolism of the plant are adjusted within the existing potential in the genome. Here we studied the adaptation strategies in date palm, Phoenix dactylifera, under mild heat, drought and combined heat and drought by transcriptomic and metabolomic profiling. In transcriptomics data, combined heat and drought resembled heat response, whereas in metabolomics data it was more similar to drought. In both conditions, soluble carbohydrates, such as fucose, and glucose derivatives, were increased, suggesting a switch to carbohydrate metabolism and cell wall biogenesis. This result is consistent with the evidence from transcriptomics and cis-motif analysis. In addition, transcriptomics data showed transcriptional activation of genes related to reactive oxygen species in all three conditions (drought, heat, and combined heat and drought), suggesting increased activity of enzymatic antioxidant systems in cytosol, chloroplast and peroxisome. 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genetics</subject><subject>Phoeniceae - metabolism</subject><subject>Phoeniceae - physiology</subject><subject>Phoenix dactylifera</subject><subject>Physical Sciences</subject><subject>Physiology</subject><subject>Plant hardiness</subject><subject>Plant heat tolerance</subject><subject>Plants (botany)</subject><subject>Profiling</subject><subject>Reactive oxygen species</subject><subject>Reactive Oxygen Species - metabolism</subject><subject>Research and Analysis Methods</subject><subject>Rhythm</subject><subject>Stress</subject><subject>Stress, Physiological</subject><subject>Stresses</subject><subject>Transcription activation</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqNkk1v1DAQhiMEoqXwDxBEQkLtYRc7_oovSFX5WqlSEQWuluOMs66y8dZ2UPffk91Nqw3qAflga_zMO57xm2WvMZpjIvCHG9-HTrfzte9gjrAQZUmeZMdYkmLGC0SeHpyPshcx3iDESMn58-yoKJlAXIjj7PoTJDDJdU0OOrSbPLqmi7m3-RJ0ynVX53XwfbNMeUwBYsxdl39feujcXV5rkzatsxB0flrrBPlat6uzl9kzq9sIr8b9JPv15fPPi2-zy6uvi4vzy5nhskgzy-q6orbUFFnAlSa2FgYxLKEUliMrOJUltqKmnFUAoqoLZDGpJIPCVgTISfZ2r7tufVTjPKLCElEpeMHxQCz2RO31jVoHt9Jho7x2ahfwoVE6JGdaUBIXlnCrDQClgjJtQSJJrcRUG1yxQevjWK2vVlAb6FLQ7UR0etO5pWr8H8UoI5SSQeB0FAj-toeY1MpFA22rO_D97t1MEMZKOaDv_kEf726kGj004Drrh7pmK6rOqSSl4GxHzR-hhlXDypnBPNYN8UnC2SRhYBLcpUb3MarF9Y__Z69-T9n3B-xgrzYto2_75HwXpyDdgyb4GAPYhyFjpLbev5-G2npfjd4f0t4cftBD0r3ZyV9TTv8D</recordid><startdate>20170601</startdate><enddate>20170601</enddate><creator>Safronov, Omid</creator><creator>Kreuzwieser, Jürgen</creator><creator>Haberer, Georg</creator><creator>Alyousif, Mohamed S</creator><creator>Schulze, Waltraud</creator><creator>Al-Harbi, Naif</creator><creator>Arab, Leila</creator><creator>Ache, Peter</creator><creator>Stempfl, Thomas</creator><creator>Kruse, Joerg</creator><creator>Mayer, Klaus X</creator><creator>Hedrich, Rainer</creator><creator>Rennenberg, Heinz</creator><creator>Salojärvi, Jarkko</creator><creator>Kangasjärvi, Jaakko</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-8959-1809</orcidid></search><sort><creationdate>20170601</creationdate><title>Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm)</title><author>Safronov, Omid ; Kreuzwieser, Jürgen ; Haberer, Georg ; Alyousif, Mohamed S ; Schulze, Waltraud ; Al-Harbi, Naif ; Arab, Leila ; Ache, Peter ; Stempfl, Thomas ; Kruse, Joerg ; Mayer, Klaus X ; Hedrich, Rainer ; Rennenberg, Heinz ; Salojärvi, Jarkko ; Kangasjärvi, Jaakko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-f5ddb4f8a40fe1ba3fd7c0519e87f60f764981f7d465bee7bd20f13b95e2fb3e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Abiotic stress</topic><topic>Abscisic acid</topic><topic>Acclimatization</topic><topic>Activation analysis</topic><topic>Adaptation</topic><topic>Adjustment</topic><topic>Antioxidants - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Safronov, Omid</au><au>Kreuzwieser, Jürgen</au><au>Haberer, Georg</au><au>Alyousif, Mohamed S</au><au>Schulze, Waltraud</au><au>Al-Harbi, Naif</au><au>Arab, Leila</au><au>Ache, Peter</au><au>Stempfl, Thomas</au><au>Kruse, Joerg</au><au>Mayer, Klaus X</au><au>Hedrich, Rainer</au><au>Rennenberg, Heinz</au><au>Salojärvi, Jarkko</au><au>Kangasjärvi, Jaakko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm)</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2017-06-01</date><risdate>2017</risdate><volume>12</volume><issue>6</issue><spage>e0177883</spage><epage>e0177883</epage><pages>e0177883-e0177883</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><notes>ObjectType-Article-1</notes><notes>SourceType-Scholarly Journals-1</notes><notes>ObjectType-Feature-2</notes><notes>content type line 23</notes><notes>Conceptualization: RH HR.Data curation: GH OS J. Salojärvi.Formal analysis: GH OS J. Salojärvi.Funding acquisition: MSA NA RH HR KXM J. Kangasjärvi.Investigation: J. Kreuzwieser LA J. Kruse PA TS.Methodology: GH KXM J. Salojärvi TS.Project administration: HR RH JS J. Kangasjärvi.Resources: WS J. Kreuzwieser GH.Software: JS OS.Supervision: HR RH KXM JS J. Kangasjärvi.Visualization: OS JS.Writing – original draft: JS.Writing – review & editing: JS J. Kangasjärvi OS.</notes><notes>Competing Interests: The authors have declared that no competing interests exist.</notes><abstract>Plants adapt to the environment by either long-term genome evolution or by acclimatization processes where the cellular processes and metabolism of the plant are adjusted within the existing potential in the genome. Here we studied the adaptation strategies in date palm, Phoenix dactylifera, under mild heat, drought and combined heat and drought by transcriptomic and metabolomic profiling. In transcriptomics data, combined heat and drought resembled heat response, whereas in metabolomics data it was more similar to drought. In both conditions, soluble carbohydrates, such as fucose, and glucose derivatives, were increased, suggesting a switch to carbohydrate metabolism and cell wall biogenesis. This result is consistent with the evidence from transcriptomics and cis-motif analysis. In addition, transcriptomics data showed transcriptional activation of genes related to reactive oxygen species in all three conditions (drought, heat, and combined heat and drought), suggesting increased activity of enzymatic antioxidant systems in cytosol, chloroplast and peroxisome. Finally, the genes that were differentially expressed in heat and combined heat and drought stresses were significantly enriched for circadian and diurnal rhythm motifs, suggesting new stress avoidance strategies.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>28570677</pmid><doi>10.1371/journal.pone.0177883</doi><tpages>e0177883</tpages><orcidid>https://orcid.org/0000-0002-8959-1809</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1932-6203 |
| ispartof | PloS one, 2017-06, Vol.12 (6), p.e0177883-e0177883 |
| issn | 1932-6203 1932-6203 |
| language | eng |
| recordid | cdi_plos_journals_1904976261 |
| source | Publicly Available Content Database; PubMed Central |
| subjects | Abiotic stress Abscisic acid Acclimatization Activation analysis Adaptation Adjustment Antioxidants - metabolism Avoidance Biological evolution Biology Biology and Life Sciences Biophysics Biosynthesis Carbohydrate metabolism Carbohydrates Cell walls Circadian rhythms Cytosol Date (Fruit) Derivatives Diurnal Drought Droughts Ecology and Environmental Sciences Enrichment Environmental aspects Environmental health Evolution Fucose Gene expression Genes Genes, Plant Genomes Glucose Heat Heat shock proteins Hot Temperature Metabolism Metabolomics Oxygen Phoeniceae - genetics Phoeniceae - metabolism Phoeniceae - physiology Phoenix dactylifera Physical Sciences Physiology Plant hardiness Plant heat tolerance Plants (botany) Profiling Reactive oxygen species Reactive Oxygen Species - metabolism Research and Analysis Methods Rhythm Stress Stress, Physiological Stresses Transcription activation |
| title | Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm) |
| url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-09-21T10%3A52%3A18IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Detecting%20early%20signs%20of%20heat%20and%20drought%20stress%20in%20Phoenix%20dactylifera%20(date%20palm)&rft.jtitle=PloS%20one&rft.au=Safronov,%20Omid&rft.date=2017-06-01&rft.volume=12&rft.issue=6&rft.spage=e0177883&rft.epage=e0177883&rft.pages=e0177883-e0177883&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0177883&rft_dat=%3Cgale_plos_%3EA493876561%3C/gale_plos_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c692t-f5ddb4f8a40fe1ba3fd7c0519e87f60f764981f7d465bee7bd20f13b95e2fb3e3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1904976261&rft_id=info:pmid/28570677&rft_galeid=A493876561&rfr_iscdi=true |