The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes

The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% co...

Full description

Saved in:
Bibliographic Details
Published in:PloS one 2012-01, Vol.7 (1), p.e30531-e30531
Main Authors: Zhang, Tongwu, Fang, Yongjun, Wang, Xumin, Deng, Xin, Zhang, Xiaowei, Hu, Songnian, Yu, Jun
Format: Article
Language:English
Subjects:
Algorithms
Analysis
Angiosperms
Base Sequence
Biological evolution
Biology
Boea hygrometrica
Chloroplasts
Chloroplasts - genetics
Cycas taitungensis
Evolution
Evolution, Molecular
Evolutionary biology
Gene sequencing
Gene transfer
Gene Transfer, Horizontal
Genes
Genes, Plant
Genetic aspects
Genome, Chloroplast
Genome, Mitochondrial
Genome, Plant - genetics
Genomes
Genomics
Laboratories
Magnoliopsida - genetics
Mitochondria
Models, Genetic
Molecular biology
Molecular Sequence Data
Nucleotide sequence
Olea europaea
Organelles - genetics
Phylogenetics
Plant evolution
Plant genetics
Plastids - genetics
RNA, Transfer - genetics
Sequence Analysis, DNA - methods
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3
cites cdi_FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3
container_end_page e30531
container_issue 1
container_start_page e30531
container_title PloS one
container_volume 7
creator Zhang, Tongwu
Fang, Yongjun
Wang, Xumin
Deng, Xin
Zhang, Xiaowei
Hu, Songnian
Yu, Jun
description The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage.
doi_str_mv 10.1371/journal.pone.0030531
format article
fullrecord <record><control><sourceid>gale_plos_</sourceid><recordid>TN_cdi_plos_journals_1323411403</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A477051491</galeid><doaj_id>oai_doaj_org_article_c80ad4f18039480fbc4eee1e85e5139e</doaj_id><sourcerecordid>A477051491</sourcerecordid><originalsourceid>FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3</originalsourceid><addsrcrecordid>eNqNk11rFDEUhgdRbK3-A9EBQfFi13zMzky8EGrxY6FQ0OptyGROZrJkkm2SKfYn-K_NutOyI72QXOSQPO-bk5OcLHuO0RLTCr_buNFbYZZbZ2GJEEUrih9kx5hRsigJog8P4qPsSQgblJC6LB9nR4QQhlnFjrPflz3k0g1bAzEFvXHebY0IMRe2zQcdneydbb0WJu_AugHyAFcjWAkhdyr_6EDk_U3n0070Wor3ubZBd30MKYguj8kfrp0Zo3Z2p0juNubOd8KCMcJPtuFp9kgJE-DZNJ9kPz5_ujz7uji_-LI-Oz1fyJLhuJBQKtWoVUMYlBILWUAKGBNlwaBthVCyqRBiq0KqFuqyFkVLGsCkIoSyQtCT7OXed2tc4FMVA8eU0ALjAtFErPdE68SGb70ehL_hTmj-dyGlzoWPWhrgskaiLRSuUfKukWpSOgAY6hWsMGWQvD5Mp43NAK0EG70wM9P5jtU979w1p6QsSoySwZvJwLtU9xD5oIPcVc6CGwNP70hIVeMqka_-Ie-_3ER1IuWvrXLpWLnz5KdFVaEVLhhO1PIeKo0WBi3Tj1M6rc8Eb2eCxET4FTsxhsDX37_9P3vxc86-PmB7ECb2YfpNYQ4We1B6F4IHdVdjjPiuYW6rwXcNw6eGSbIXh-9zJ7rtEPoHtkoUcg</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1323411403</pqid></control><display><type>article</type><title>The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes</title><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Zhang, Tongwu ; Fang, Yongjun ; Wang, Xumin ; Deng, Xin ; Zhang, Xiaowei ; Hu, Songnian ; Yu, Jun</creator><contributor>Badger, Jonathan H.</contributor><creatorcontrib>Zhang, Tongwu ; Fang, Yongjun ; Wang, Xumin ; Deng, Xin ; Zhang, Xiaowei ; Hu, Songnian ; Yu, Jun ; Badger, Jonathan H.</creatorcontrib><description>The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0030531</identifier><identifier>PMID: 22291979</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Algorithms ; Analysis ; Angiosperms ; Base Sequence ; Biological evolution ; Biology ; Boea hygrometrica ; Chloroplasts ; Chloroplasts - genetics ; Cycas taitungensis ; Evolution ; Evolution, Molecular ; Evolutionary biology ; Gene sequencing ; Gene transfer ; Gene Transfer, Horizontal ; Genes ; Genes, Plant ; Genetic aspects ; Genome, Chloroplast ; Genome, Mitochondrial ; Genome, Plant - genetics ; Genomes ; Genomics ; Laboratories ; Magnoliopsida - genetics ; Mitochondria ; Models, Genetic ; Molecular biology ; Molecular Sequence Data ; Nucleotide sequence ; Olea europaea ; Organelles - genetics ; Phylogenetics ; Plant evolution ; Plant genetics ; Plastids - genetics ; RNA, Transfer - genetics ; Sequence Analysis, DNA - methods</subject><ispartof>PloS one, 2012-01, Vol.7 (1), p.e30531-e30531</ispartof><rights>COPYRIGHT 2012 Public Library of Science</rights><rights>2012 Zhang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Zhang et al. 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3</citedby><cites>FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1323411403/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1323411403?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,315,733,786,790,891,25783,27957,27958,37047,37048,44625,53827,53829,75483</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22291979$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Badger, Jonathan H.</contributor><creatorcontrib>Zhang, Tongwu</creatorcontrib><creatorcontrib>Fang, Yongjun</creatorcontrib><creatorcontrib>Wang, Xumin</creatorcontrib><creatorcontrib>Deng, Xin</creatorcontrib><creatorcontrib>Zhang, Xiaowei</creatorcontrib><creatorcontrib>Hu, Songnian</creatorcontrib><creatorcontrib>Yu, Jun</creatorcontrib><title>The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage.</description><subject>Algorithms</subject><subject>Analysis</subject><subject>Angiosperms</subject><subject>Base Sequence</subject><subject>Biological evolution</subject><subject>Biology</subject><subject>Boea hygrometrica</subject><subject>Chloroplasts</subject><subject>Chloroplasts - genetics</subject><subject>Cycas taitungensis</subject><subject>Evolution</subject><subject>Evolution, Molecular</subject><subject>Evolutionary biology</subject><subject>Gene sequencing</subject><subject>Gene transfer</subject><subject>Gene Transfer, Horizontal</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Genetic aspects</subject><subject>Genome, Chloroplast</subject><subject>Genome, Mitochondrial</subject><subject>Genome, Plant - genetics</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Laboratories</subject><subject>Magnoliopsida - genetics</subject><subject>Mitochondria</subject><subject>Models, Genetic</subject><subject>Molecular biology</subject><subject>Molecular Sequence Data</subject><subject>Nucleotide sequence</subject><subject>Olea europaea</subject><subject>Organelles - genetics</subject><subject>Phylogenetics</subject><subject>Plant evolution</subject><subject>Plant genetics</subject><subject>Plastids - genetics</subject><subject>RNA, Transfer - genetics</subject><subject>Sequence Analysis, DNA - methods</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqNk11rFDEUhgdRbK3-A9EBQfFi13zMzky8EGrxY6FQ0OptyGROZrJkkm2SKfYn-K_NutOyI72QXOSQPO-bk5OcLHuO0RLTCr_buNFbYZZbZ2GJEEUrih9kx5hRsigJog8P4qPsSQgblJC6LB9nR4QQhlnFjrPflz3k0g1bAzEFvXHebY0IMRe2zQcdneydbb0WJu_AugHyAFcjWAkhdyr_6EDk_U3n0070Wor3ubZBd30MKYguj8kfrp0Zo3Z2p0juNubOd8KCMcJPtuFp9kgJE-DZNJ9kPz5_ujz7uji_-LI-Oz1fyJLhuJBQKtWoVUMYlBILWUAKGBNlwaBthVCyqRBiq0KqFuqyFkVLGsCkIoSyQtCT7OXed2tc4FMVA8eU0ALjAtFErPdE68SGb70ehL_hTmj-dyGlzoWPWhrgskaiLRSuUfKukWpSOgAY6hWsMGWQvD5Mp43NAK0EG70wM9P5jtU979w1p6QsSoySwZvJwLtU9xD5oIPcVc6CGwNP70hIVeMqka_-Ie-_3ER1IuWvrXLpWLnz5KdFVaEVLhhO1PIeKo0WBi3Tj1M6rc8Eb2eCxET4FTsxhsDX37_9P3vxc86-PmB7ECb2YfpNYQ4We1B6F4IHdVdjjPiuYW6rwXcNw6eGSbIXh-9zJ7rtEPoHtkoUcg</recordid><startdate>20120123</startdate><enddate>20120123</enddate><creator>Zhang, Tongwu</creator><creator>Fang, Yongjun</creator><creator>Wang, Xumin</creator><creator>Deng, Xin</creator><creator>Zhang, Xiaowei</creator><creator>Hu, Songnian</creator><creator>Yu, Jun</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20120123</creationdate><title>The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes</title><author>Zhang, Tongwu ; Fang, Yongjun ; Wang, Xumin ; Deng, Xin ; Zhang, Xiaowei ; Hu, Songnian ; Yu, Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Algorithms</topic><topic>Analysis</topic><topic>Angiosperms</topic><topic>Base Sequence</topic><topic>Biological evolution</topic><topic>Biology</topic><topic>Boea hygrometrica</topic><topic>Chloroplasts</topic><topic>Chloroplasts - genetics</topic><topic>Cycas taitungensis</topic><topic>Evolution</topic><topic>Evolution, Molecular</topic><topic>Evolutionary biology</topic><topic>Gene sequencing</topic><topic>Gene transfer</topic><topic>Gene Transfer, Horizontal</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Genetic aspects</topic><topic>Genome, Chloroplast</topic><topic>Genome, Mitochondrial</topic><topic>Genome, Plant - genetics</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Laboratories</topic><topic>Magnoliopsida - genetics</topic><topic>Mitochondria</topic><topic>Models, Genetic</topic><topic>Molecular biology</topic><topic>Molecular Sequence Data</topic><topic>Nucleotide sequence</topic><topic>Olea europaea</topic><topic>Organelles - genetics</topic><topic>Phylogenetics</topic><topic>Plant evolution</topic><topic>Plant genetics</topic><topic>Plastids - genetics</topic><topic>RNA, Transfer - genetics</topic><topic>Sequence Analysis, DNA - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Tongwu</creatorcontrib><creatorcontrib>Fang, Yongjun</creatorcontrib><creatorcontrib>Wang, Xumin</creatorcontrib><creatorcontrib>Deng, Xin</creatorcontrib><creatorcontrib>Zhang, Xiaowei</creatorcontrib><creatorcontrib>Hu, Songnian</creatorcontrib><creatorcontrib>Yu, Jun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing &amp; Allied Health Database (ProQuest)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological &amp; Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health &amp; Medical Collection (Proquest)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database (Proquest)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science &amp; Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Advanced Technologies &amp; Aerospace Database‎ (1962 - current)</collection><collection>ProQuest Agriculture &amp; Environmental Science Database</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Materials Science Database</collection><collection>Nursing &amp; Allied Health Database (Alumni Edition)</collection><collection>Meteorological &amp; Geoastrophysical Abstracts - Academic</collection><collection>ProQuest Engineering Collection</collection><collection>Biological Sciences</collection><collection>Agriculture Science Database</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>ProQuest Engineering Database</collection><collection>Nursing &amp; Allied Health Premium</collection><collection>ProQuest Advanced Technologies &amp; Aerospace Database</collection><collection>ProQuest Advanced Technologies &amp; Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>Environmental Science Collection</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Tongwu</au><au>Fang, Yongjun</au><au>Wang, Xumin</au><au>Deng, Xin</au><au>Zhang, Xiaowei</au><au>Hu, Songnian</au><au>Yu, Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2012-01-23</date><risdate>2012</risdate><volume>7</volume><issue>1</issue><spage>e30531</spage><epage>e30531</epage><pages>e30531-e30531</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><notes>ObjectType-Article-1</notes><notes>SourceType-Scholarly Journals-1</notes><notes>ObjectType-Feature-2</notes><notes>content type line 23</notes><notes>Conceived and designed the experiments: JY XD SH. Performed the experiments: XW XZ. Analyzed the data: TZ YF. Contributed reagents/materials/analysis tools: XD. Wrote the paper: TZ YF.</notes><abstract>The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>22291979</pmid><doi>10.1371/journal.pone.0030531</doi><tpages>e30531</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1932-6203
ispartof PloS one, 2012-01, Vol.7 (1), p.e30531-e30531
issn 1932-6203
1932-6203
language eng
recordid cdi_plos_journals_1323411403
source Publicly Available Content Database; PubMed Central
subjects Algorithms
Analysis
Angiosperms
Base Sequence
Biological evolution
Biology
Boea hygrometrica
Chloroplasts
Chloroplasts - genetics
Cycas taitungensis
Evolution
Evolution, Molecular
Evolutionary biology
Gene sequencing
Gene transfer
Gene Transfer, Horizontal
Genes
Genes, Plant
Genetic aspects
Genome, Chloroplast
Genome, Mitochondrial
Genome, Plant - genetics
Genomes
Genomics
Laboratories
Magnoliopsida - genetics
Mitochondria
Models, Genetic
Molecular biology
Molecular Sequence Data
Nucleotide sequence
Olea europaea
Organelles - genetics
Phylogenetics
Plant evolution
Plant genetics
Plastids - genetics
RNA, Transfer - genetics
Sequence Analysis, DNA - methods
title The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-09-22T03%3A24%3A02IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20complete%20chloroplast%20and%20mitochondrial%20genome%20sequences%20of%20Boea%20hygrometrica:%20insights%20into%20the%20evolution%20of%20plant%20organellar%20genomes&rft.jtitle=PloS%20one&rft.au=Zhang,%20Tongwu&rft.date=2012-01-23&rft.volume=7&rft.issue=1&rft.spage=e30531&rft.epage=e30531&rft.pages=e30531-e30531&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0030531&rft_dat=%3Cgale_plos_%3EA477051491%3C/gale_plos_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c691t-ce6ffbf5b29e6c1ac4e9e699a649eddaafcb700954cfde868a4d2be12722394a3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1323411403&rft_id=info:pmid/22291979&rft_galeid=A477051491&rfr_iscdi=true