Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

by de Boer, Carl G, Vaishnav, Eeshit Dhaval, Sadeh, Ronen, Abeyta, Esteban Luis, Friedman, Nir, Regev, Aviv
Published in Nature biotechnology

The evolution, evolvability and engineering of gene regulatory DNA

by Vaishnav, Eeshit Dhaval, de Boer, Carl G, Molinet, Jennifer, Yassour, Moran, Fan, Lin, Adiconis, Xian, Thompson, Dawn A, Levin, Joshua Z, Cubillos, Francisco A, Regev, Aviv
Published in Nature (London)

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

by Baryawno, Ninib, Przybylski, Dariusz, Kowalczyk, Monika S., Kfoury, Youmna, Severe, Nicolas, Gustafsson, Karin, Kokkaliaris, Konstantinos D., Mercier, Francois, Tabaka, Marcin, Hofree, Matan, Dionne, Danielle, Papazian, Ani, Lee, Dongjun, Ashenberg, Orr, Subramanian, Ayshwarya, Vaishnav, Eeshit Dhaval, Rozenblatt-Rosen, Orit, Regev, Aviv, Scadden, David T.
Published in Cell

Actomyosin meshwork mechanosensing enables tissue shape to orient cell force

by Chanet, Soline, Miller, Callie J, Vaishnav, Eeshit Dhaval, Ermentrout, Bard, Davidson, Lance A, Martin, Adam C
Published in Nature communications

Author Correction: Deciphering eukaryotic gene-regulatory logic with 100 million random promoters

by de Boer, Carl G, Vaishnav, Eeshit Dhaval, Sadeh, Ronen, Abeyta, Esteban Luis, Friedman, Nir, Regev, Aviv
Published in Nature biotechnology

Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain

by Zhang, Yun, Miller, Jeremy A, Park, Jeongbin, Lelieveldt, Boudewijn P, Long, Brian, Abdelaal, Tamim, Aevermann, Brian D, Biancalani, Tommaso, Comiter, Charles, Dzyubachyk, Oleh, Eggermont, Jeroen, Langseth, Christoffer Mattsson, Petukhov, Viktor, Scalia, Gabriele, Vaishnav, Eeshit Dhaval, Zhao, Yilin, Lein, Ed S, Scheuermann, Richard H
Published in Scientific reports

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

by Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S, Aldridge, Andrew I, Ament, Seth A, Bartlett, Anna, Behrens, M Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L, Doyle, Wayne I, Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R, Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D, Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M, Nery, Joseph R, Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K, Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C, Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R, van Velthoven, Cindy, Wang, Xinxin, White, Owen R, Huang, Z Josh, Kharchenko, Peter V, Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D, Gillis, Jesse, Macosko, Evan Z, Ren, Bing, Ecker, Joseph R, Zeng, Hongkui, Mukamel, Eran A
Published in Nature (London)

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlig...

by Muus, Christoph, Luecken, Malte D, Eraslan, Gokcen, Heimberg, Graham, Sikkema, Lisa, Kobayashi, Yoshihiko, Eeshit Dhaval Vaishnav, Subramanian, Ayshwarya, Smillie, Christopher, Duong, Elizabeth Thu, Fiskin, Evgenij, Triglia, Elena Torlai, Becavin, Christophe, Ansari, Meshal, Cai, Peiwen, Lin, Brian, Buchanan, Justin, Chen, Sijia, Shu, Jian, Haber, Adam L, Chung, Hattie, Montoro, Daniel T, Adams, Taylor, Hananeh Aliee, Allon, Samuel J, Andrusivova, Zaneta, Angelidis, Ilias, Orr Ashenberg, Bassler, Kevin, Benhar, Inbal, Bergenstrahle, Joseph, Bergenstrahle, Ludvig, Bolt, Liam, Braun, Emelie, Chaffin, Mark, Chichelnitskiy, Evgeny, Chiou, Joshua, Conlon, Thomas M, Cuoco, Michael S, Deprez, Marie, Fischer, David S, Gillich, Astrid, Gould, Joshua, Guo, Minzhe, Gutierrez, Austin J, Habermann, Arun C, Tyler, Harvey, He, Peng, Hou, Xiaomeng, Jaiswal, Alok, Jiang, Peiyong, Kapellos, Theodoros, Kuo, Christin S, Larsson, Ludvig, Leney-Greene, Michael A, Lim, Kyungtae, Litvinukova, Monika, Lu, Ji, Ludwig, Leif S, Luo, Wendy, Maatz, Henrike, Lira Mamanova, Manakongtreecheep, Kasidet, Charles-Hugo Marquette, Mbano, Ian, Mcadams, Alexi M, Metzger, Ross J, Nabhan, Ahmad N, Nyquist, Sarah K, Ordovas-Montanes, Jose, Penland, Lolita, Poirion, Olivier B, Poli, Segio, Cancan Qi, Reichart, Daniel, Rosas, Ivan, Schupp, Jonas, Sinha, Rahul, Sit, Rene V, Slowikowski, Kamil, Slyper, Michal, Smith, Neal, Sountoulidis, Alex, Strunz, Maximilian, Talavera-Lopez, Carlos, Tan, Peng, Tantivit, Jessica, Travaglini, Kyle J, Tucker, Nathan R, Vernon, Katherine, Wadsworth, Marc H, Waldman, Julia, Wang, Xiuting, Yan, Wenjun, Ali Onder Yildirim, Zhao, William, Ziegler, Carly G K, Regev, Aviv, The Nhlbi Lungmap Consortium, The Human Cell Atlas Lung Biological Network
Published in bioRxiv