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Search Results - Thibodeau, Asa
Search Results - Thibodeau, Asa
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CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data
by
Thibodeau, Asa
,
Khetan, Shubham
,
Eroglu, Alper
,
Tewhey, Ryan
,
Stitzel, Michael L
,
Ucar, Duygu
Published in
PLoS computational biology
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AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data
by
Thibodeau, Asa
,
Eroglu, Alper
,
McGinnis, Christopher S
,
Lawlor, Nathan
,
Nehar-Belaid, Djamel
,
Kursawe, Romy
,
Marches, Radu
,
Conrad, Daniel N
,
Kuchel, George A
,
Gartner, Zev J
,
Banchereau, Jacques
,
Stitzel, Michael L
,
Cicek, A Ercument
,
Ucar, Duygu
Published in
Genome Biology
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Concomitant inhibition of PPARγ and mTORC1 induces the differentiation of human monocytes into highly immunogenic dendritic cells
by
Erra Diaz, Fernando
,
Mazzitelli, Ignacio
,
Bleichmar, Lucía
,
Melucci, Claudia
,
Thibodeau, Asa
,
Dalotto Moreno, Tomás
,
Marches, Radu
,
Rabinovich, Gabriel A.
,
Ucar, Duygu
,
Geffner, Jorge
Published in
Cell reports (Cambridge)
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QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
by
Thibodeau, Asa
,
Márquez, Eladio J
,
Luo, Oscar
,
Ruan, Yijun
,
Menghi, Francesca
,
Shin, Dong-Guk
,
Stitzel, Michael L
,
Vera-Licona, Paola
,
Ucar, Duygu
Published in
PLoS computational biology
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TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators
by
Thibodeau, Asa
,
Shin, Dong-Guk
Published in
Bioinformatics
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A neural network based model effectively predicts enhancers from clinical ATAC-seq samples
by
Thibodeau, Asa
,
Uyar, Asli
,
Khetan, Shubham
,
Stitzel, Michael L
,
Ucar, Duygu
Published in
Scientific reports
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Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin
by
Thibodeau, Asa
,
Márquez, Eladio J
,
Shin, Dong-Guk
,
Vera-Licona, Paola
,
Ucar, Duygu
Published in
Scientific reports
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Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function
by
Lawlor, Nathan
,
Márquez, Eladio J.
,
Orchard, Peter
,
Narisu, Narisu
,
Shamim, Muhammad Saad
,
Thibodeau, Asa
,
Varshney, Arushi
,
Kursawe, Romy
,
Erdos, Michael R.
,
Kanke, Matt
,
Gu, Huiya
,
Pak, Evgenia
,
Dutra, Amalia
,
Russell, Sheikh
,
Li, Xingwang
,
Piecuch, Emaly
,
Luo, Oscar
,
Chines, Peter S.
,
Fuchbserger, Christian
,
Sethupathy, Praveen
,
Aiden, Aviva Presser
,
Ruan, Yijun
,
Aiden, Erez Lieberman
,
Collins, Francis S.
,
Ucar, Duygu
,
Parker, Stephen C.J.
,
Stitzel, Michael L.
Published in
Cell reports (Cambridge)
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Epigenetic Memory of COVID-19 in Innate Immune Cells and Their Progenitors
by
Cheong, Jin Gyu
,
Ravishankar, Arjun
,
Sharma, Siddhartha
,
Parkhurst, Christopher
,
Nehar-Belaid, Djamel
,
Ma, Sai
,
Paddock, Lucinda
,
Benoit Fatou
,
Karakaslar, Emin
,
Thibodeau, Asa
,
Bale, Michael
,
Kartha, Vinay
,
Yee, Jim
,
Minh Yen Mays
,
Leyre, Louise
,
Martinez De Paz, Alexia
,
Daman, Andrew
,
Alvarez-Mulett, Sergio
,
Robbins, Lexi
,
Lafond, Elyse
,
Weidman, Karissa
,
Racine-Brzostek, Sabrina
,
He, Yang
,
Price, David
,
Jones, R Brad
,
Schenck, Edward
,
Kaner, Rob
,
Chadburn, Amy
,
Zhao, Zhen
,
Steen, Hanno
,
Pascual, Virginia
,
Buenrostro, Jason
,
Niec, Rachel
,
Lief, Lindsay
,
Ucar, Duygu
,
Josefowicz, Steven
Published in
bioRxiv
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