MicroRNA Sequence and Expression Analysis in Breast Tumors by Deep Sequencing

by FARAZI, Thalia A, HORLINGS, Hugo M, KREIKE, Bas, SIE, Daoud, HOVESTADT, Volker, WESSELS, Lodewyk F. A, VAN DE VIJVER, Marc J, TUSCHL, Thomas, TEN HOEVE, Jelle J, MIHAILOVIC, Aleksandra, HALFWERK, Hans, MOROZOV, Pavel, BROWN, Miguel, HAFNER, Markus, REYAL, Fabien, VAN KOUWENHOVE, Marieke
Published in Cancer research (Chicago, Ill.)

Pretreatment microRNA Expression Impacting on Epithelial-to-Mesenchymal Transition Predicts Intrinsic Radiosensitivity in Head and Neck Cancer Cell Lines and Patients

by de Jong, Monique C, Ten Hoeve, Jelle J, Grénman, Reidar, Wessels, Lodewyk F, Kerkhoven, Ron, Te Riele, Hein, van den Brekel, Michiel W M, Verheij, Marcel, Begg, Adrian C
Published in Clinical cancer research

Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets

by Farazi, Thalia A, Ten Hoeve, Jelle J, Brown, Miguel, Mihailovic, Aleksandra, Horlings, Hugo M, van de Vijver, Marc J, Tuschl, Thomas, Wessels, Lodewyk F A
Published in Genome biology

Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing

by Farazi, Thalia A., Brown, Miguel, Morozov, Pavel, ten Hoeve, Jelle J., Ben-Dov, Iddo Z., Hovestadt, Volker, Hafner, Markus, Renwick, Neil, Mihailović, Aleksandra, Wessels, Lodewyk F.A., Tuschl, Thomas
Published in Methods (San Diego, Calif.)

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks

by van Dyk, Ewald, Hoogstraat, Marlous, Ten Hoeve, Jelle, Reinders, Marcel J T, Wessels, Lodewyk F A
Published in Nature communications

High-throughput semiquantitative analysis of insertional mutations in heterogeneous tumors

by Koudijs, Marco J, Klijn, Christiaan, van der Weyden, Louise, Kool, Jaap, ten Hoeve, Jelle, Sie, Daoud, Prasetyanti, Pramudita R, Schut, Eva, Kas, Sjors, Whipp, Theodore, Cuppen, Edwin, Wessels, Lodewyk, Adams, David J, Jonkers, Jos
Published in Genome research

Analysis of tumor heterogeneity and cancer gene networks using deep sequencing of MMTV-induced mouse mammary tumors

by Klijn, Christiaan, Koudijs, Marco J, Kool, Jaap, ten Hoeve, Jelle, Boer, Mandy, de Moes, Joost, Akhtar, Waseem, van Miltenburg, Martine, Vendel-Zwaagstra, Annabel, Reinders, Marcel J T, Adams, David J, van Lohuizen, Maarten, Hilkens, John, Wessels, Lodewyk F A, Jonkers, Jos
Published in PloS one

AACR Project GENIE: Powering Precision Medicine through an International Consortium

by André, Fabrice, Arnedos, Monica, Baras, Alexander S., Baselga, José, Bedard, Philippe L., Berger, Michael F., Bierkens, Mariska, Calvo, Fabien, Cerami, Ethan, Chakravarty, Debyani, Dang, Kristen K., Davidson, Nancy E., Del Vecchio Fitz, Catherine, Dogan, Semih, DuBois, Raymond N., Ducar, Matthew D., Futreal, P. Andrew, Gao, Jianjiong, Garcia, Francisco, Gardos, Stu, Gocke, Christopher D., Gross, Benjamin E., Guinney, Justin, Heins, Zachary J., Hintzen, Stephanie, Horlings, Hugo, Hudeček, Jan, Hyman, David M., Kamel-Reid, Suzanne, Kandoth, Cyriac, Kinyua, Walter, Kumari, Priti, Kundra, Ritika, Ladanyi, Marc, Lefebvre, Céline, LeNoue-Newton, Michele L., Lepisto, Eva M., Levy, Mia A., Lindeman, Neal I., Lindsay, James, Liu, David, Lu, Zhibin, MacConaill, Laura E., Maurer, Ian, Maxwell, David S., Meijer, Gerrit A., Meric-Bernstam, Funda, Micheel, Christine M., Miller, Clinton, Mills, Gordon, Moore, Nathanael D., Nederlof, Petra M., Omberg, Larsson, Orechia, John A., Park, Ben Ho, Pugh, Trevor J., Reardon, Brendan, Rollins, Barrett J., Routbort, Mark J., Sawyers, Charles L., Schrag, Deborah, Schultz, Nikolaus, Shaw, Kenna R Mills, Shivdasani, Priyanka, Siu, Lillian L., Solit, David B., Sonke, Gabe S., Soria, Jean Charles, Sripakdeevong, Parin, Stickle, Natalie H., Stricker, Thomas P., Sweeney, Shawn M., Taylor, Barry S., ten Hoeve, Jelle J., Thomas, Stacy B., Van Allen, Eliezer M., Van 'T Veer, Laura J., van de Velde, Tony, van Tinteren, Harm, Velculescu, Victor E., Virtanen, Carl, Voest, Emile E., Wang, Lucy L., Wathoo, Chetna, Watt, Stuart, Yu, Celeste, Yu, Thomas V., Yu, Emily, Zehir, Ahmet, Zhang, Hongxin
Published in Cancer discovery

Erratum: Corrigendum: The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma

by Pérez-Mancera, Pedro A., Rust, Alistair G., van der Weyden, Louise, Kristiansen, Glen, Li, Allen, Sarver, Aaron L., Silverstein, Kevin A. T., Grützmann, Robert, Aust, Daniela, Rümmele, Petra, Knösel, Thomas, Herd, Colin, Stemple, Derek L., Kettleborough, Ross, Brosnan, Jacqueline A., Li, Ang, Morgan, Richard, Knight, Spencer, Yu, Jun, Stegeman, Shane, Collier, Lara S., ten Hoeve, Jelle J., de Ridder, Jeroen, Klein, Alison P., Goggins, Michael, Hruban, Ralph H., Chang, David K., Biankin, Andrew V., Grimmond, Sean M., Initiative, Australian Pancreatic Cancer Genome, Wessels, Lodewyk F. A., Wood, Stephen A., Iacobuzio-Donahue, Christine A., Pilarsky, Christian, Largaespada, David A., Adams, David J., Tuveson, David A.
Published in Nature (London)

Analysis of Tumor Heterogeneity and Cancer Gene Networks Using Deep Sequencing of MMTV-Induced Mouse Mammary Tumors. e62113

by Klijn, Christiaan, Koudijs, Marco J, Kool, Jaap, Hoeve, Jelle ten, Boer, Mandy, Moes, Joost de, Akhtar, Waseem, Miltenburg, Martine van, Vendel-Zwaagstra, Annabel, Reinders, Marcel JT
Published in PloS one