The Encyclopedia of DNA elements (ENCODE): data portal update by Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael

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New developments on the Encyclopedia of DNA Elements (ENCODE) data portal by Luo, Yunhai, Hitz, Benjamin C, Gabdank, Idan, Hilton, Jason A, Kagda, Meenakshi S, Lam, Bonita, Myers, Zachary, Sud, Paul, Jou, Jennifer, Lin, Khine, Baymuradov, Ulugbek K, Graham, Keenan, Litton, Casey, Miyasato, Stuart R, Strattan, J Seth, Jolanki, Otto, Lee, Jin-Wook, Tanaka, Forrest Y, Adenekan, Philip, O’Neill, Emma, Cherry, J Michael

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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata by Hitz, Benjamin C, Rowe, Laurence D, Podduturi, Nikhil R, Glick, David I, Baymuradov, Ulugbek K, Malladi, Venkat S, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Narayana, Aditi K, Onate, Kathrina C, Hilton, Jason, Ho, Marcus C, Lee, Brian T, Miyasato, Stuart R, Dreszer, Timothy R, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest Y, Hong, Eurie L, Cherry, J Michael

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Prevention of data duplication for high throughput sequencing repositories by Gabdank, Idan, Chan, Esther T, Davidson, Jean M, Hilton, Jason A, Davis, Carrie A, Baymuradov, Ulugbek K, Narayanan, Aditi, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Hitz, Benjamin C, Sloan, Cricket A, Cherry, J Michael

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ENCODE data at the ENCODE portal by Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg, Podduturi, Nikhil R, Tanaka, Forrest, Hong, Eurie L, Cherry, J Michael

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The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models by Rozowsky, Joel, Gao, Jiahao, Borsari, Beatrice, Yang, Yucheng T., Galeev, Timur, Gürsoy, Gamze, Epstein, Charles B., Xiong, Kun, Xu, Jinrui, Li, Tianxiao, Liu, Jason, Yu, Keyang, Berthel, Ana, Chen, Zhanlin, Navarro, Fabio, Sun, Maxwell S., Wright, James, Chang, Justin, Cameron, Christopher J.F., Shoresh, Noam, Gaskell, Elizabeth, Drenkow, Jorg, Adrian, Jessika, Aganezov, Sergey, Aguet, François, Balderrama-Gutierrez, Gabriela, Banskota, Samridhi, Corona, Guillermo Barreto, Chhetri, Surya B., Cortez Martins, Gabriel Conte, Danyko, Cassidy, Davis, Carrie A., Farid, Daniel, Farrell, Nina P., Gabdank, Idan, Gofin, Yoel, Gorkin, David U., Gu, Mengting, Hecht, Vivian, Hitz, Benjamin C., Jiang, Yunzhe, Kirsche, Melanie, Kong, Xiangmeng, Lam, Bonita R., Li, Shantao, Li, Bian, Li, Xiqi, Luo, Ruibang, Mackiewicz, Mark, Meng, Ran, Moore, Jill E., Mudge, Jonathan, Nelson, Nicholas, Nusbaum, Chad, Popov, Ioann, Pratt, Henry E., Qiu, Yunjiang, Ramakrishnan, Srividya, Raymond, Joe, Salichos, Leonidas, Scavelli, Alexandra, Schreiber, Jacob M., Sedlazeck, Fritz J., See, Lei Hoon, Sherman, Rachel M., Shi, Xu, Shi, Minyi, Sloan, Cricket Alicia, Strattan, J Seth, Tan, Zhen, Tanaka, Forrest Y., Vlasova, Anna, Wang, Jun, Werner, Jonathan, Williams, Brian, Xu, Min, Yan, Chengfei, Yu, Lu, Zaleski, Christopher, Zhang, Jing, Ardlie, Kristin, Cherry, J Michael, Mendenhall, Eric M., Noble, William S., Weng, Zhiping, Levine, Morgan E., Dobin, Alexander, Wold, Barbara, Mortazavi, Ali, Ren, Bing, Gillis, Jesse, Myers, Richard M., Snyder, Michael P., Choudhary, Jyoti, Milosavljevic, Aleksandar, Schatz, Michael C., Bernstein, Bradley E., Guigó, Roderic, Gingeras, Thomas R., Gerstein, Mark

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Principles of metadata organization at the ENCODE data coordination center by Hong, Eurie L, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg R, Podduturi, Nikhil R, Tanaka, Forrest, Hilton, Jason A, Cherry, J Michael

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Ontology application and use at the ENCODE DCC by Malladi, Venkat S, Erickson, Drew T, Podduturi, Nikhil R, Rowe, Laurence D, Chan, Esther T, Davidson, Jean M, Hitz, Benjamin C, Ho, Marcus, Lee, Brian T, Miyasato, Stuart, Roe, Gregory R, Simison, Matt, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest, Kent, W James, Cherry, J Michael, Hong, Eurie L

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Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers by Kaczkowski, Bogumil, Tanaka, Yuji, Kawaji, Hideya, Sandelin, Albin, Andersson, Robin, Itoh, Masayoshi, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R R

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An atlas of active enhancers across human cell types and tissues by Andersson, Robin, Gebhard, Claudia, Miguel-Escalada, Irene, Hoof, Ilka, Bornholdt, Jette, Boyd, Mette, Chen, Yun, Zhao, Xiaobei, Schmidl, Christian, Suzuki, Takahiro, Ntini, Evgenia, Arner, Erik, Valen, Eivind, Li, Kang, Schwarzfischer, Lucia, Glatz, Dagmar, Raithel, Johanna, Lilje, Berit, Rapin, Nicolas, Bagger, Frederik Otzen, Jørgensen, Mette, Andersen, Peter Refsing, Bertin, Nicolas, Rackham, Owen, Burroughs, A Maxwell, Baillie, J Kenneth, Ishizu, Yuri, Shimizu, Yuri, Furuhata, Erina, Maeda, Shiori, Negishi, Yutaka, Mungall, Christopher J, Meehan, Terrence F, Lassmann, Timo, Itoh, Masayoshi, Kawaji, Hideya, Kondo, Naoto, Kawai, Jun, Lennartsson, Andreas, Daub, Carsten O, Heutink, Peter, Hume, David A, Jensen, Torben Heick, Suzuki, Harukazu, Hayashizaki, Yoshihide, Müller, Ferenc, Forrest, Alistair R R, Carninci, Piero, Rehli, Michael, Sandelin, Albin

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Ferroelectric Sr3Zr2O7: Competition between Hybrid Improper Ferroelectric and Antiferroelectric Mechanisms by Yoshida, Suguru, Fujita, Koji, Akamatsu, Hirofumi, Hernandez, Olivier, Sen Gupta, Arnab, Brown, Forrest G., Padmanabhan, Haricharan, Gibbs, Alexandra S., Kuge, Toshihiro, Tsuji, Ryosuke, Murai, Shunsuke, Rondinelli, James M., Gopalan, Venkatraman, Tanaka, Katsuhisa

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Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells by Arner, Erik, Forrest, Alistair R R, Ehrlund, Anna, Mejhert, Niklas, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Laurencikiene, Jurga, Rydén, Mikael, Arner, Peter

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The statistical geometry of transcriptome divergence in cell-type evolution and cancer by Liang, Cong, Forrest, Alistair R R, Wagner, Günter P

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Distinct involvement of the cranial and spinal nerves in progressive supranuclear palsy by Tanaka, Hidetomo, Martinez-Valbuena, Ivan, Forrest, Shelley L, Couto, Blas, Reyes, Nikolai Gil, Morales-Rivero, Alonso, Lee, Seojin, Li, Jun, Karakani, Ali M, Tang-Wai, David F, Tator, Charles, Khadadadi, Mozhgan, Sadia, Nusrat, Tartaglia, Maria Carmela, Lang, Anthony E, Kovacs, Gabor G

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Revisiting the relevance of Hirano bodies in neurodegenerative diseases by Yoshida, Koji, Forrest, Shelley L., Ichimata, Shojiro, Tanaka, Hidetomo, Kon, Tomoya, Tartaglia, Maria Carmela, Tator, Charles H., Lang, Anthony E., Nishida, Naoki, Kovacs, Gabor G.

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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells by Arner, Erik, Daub, Carsten O., Vitting-Seerup, Kristoffer, Andersson, Robin, Lilje, Berit, Drabløs, Finn, Lennartsson, Andreas, Rönnerblad, Michelle, Hrydziuszko, Olga, Vitezic, Morana, Freeman, Tom C., Alhendi, Ahmad M. N., Arner, Peter, Axton, Richard, Baillie, J. Kenneth, Bodega, Beatrice, Briggs, James, Brombacher, Frank, Davis, Margaret, Detmar, Michael, Ehrlund, Anna, Endoh, Mitsuhiro, Eslami, Afsaneh, Fagiolini, Michela, Fairbairn, Lynsey, Faulkner, Geoffrey J., Ferrai, Carmelo, Fisher, Malcolm E., Forrester, Lesley, Goldowitz, Daniel, Guler, Reto, Hara, Mitsuko, Herlyn, Meenhard, Ikawa, Tomokatsu, Kai, Chieko, Kawamoto, Hiroshi, Klinken, S. Peter, Kojima, Soichi, Koseki, Haruhiko, Klein, Sarah, Mejhert, Niklas, Miyaguchi, Ken, Mizuno, Yosuke, Morimoto, Mitsuru, Morris, Kelly J., Nakachi, Yutaka, Ogishima, Soichi, Okada-Hatakeyama, Mariko, Okazaki, Yasushi, Orlando, Valerio, Ovchinnikov, Dmitry, Passier, Robert, Patrikakis, Margaret, Pombo, Ana, Qin, Xian-Yang, Roy, Sugata, Sato, Hiroki, Savvi, Suzana, Saxena, Alka, Schwegmann, Anita, Swoboda, Rolf, Tanaka, Hiroshi, Tomoiu, Andru, Winteringham, Louise N., Wolvetang, Ernst, Yanagi-Mizuochi, Chiyo, Yoneda, Misako, Zabierowski, Susan, Zhang, Peter, Abugessaisa, Imad, Bertin, Nicolas, Diehl, Alexander D., Fukuda, Shiro, Furuno, Masaaki, Harshbarger, Jayson, Hasegawa, Akira, Hori, Fumi, Ishikawa-Kato, Sachi, Ishizu, Yuri, Itoh, Masayoshi, Kawashima, Tsugumi, Kojima, Miki, Kondo, Naoto, Lizio, Marina, Meehan, Terrence F., Mungall, Christopher J., Murata, Mitsuyoshi, Nishiyori-Sueki, Hiromi, Sahin, Serkan, Nagao-Sato, Sayaka, Severin, Jessica, Kawai, Jun, Kasukawa, Takeya, Lassmann, Timo, Suzuki, Harukazu, Kawaji, Hideya, Wells, Christine, Hume, David A., Sandelin, Albin, Hayashizaki, Yoshihide

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Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage by Carbajo, Daniel, Magi, Shigeyuki, Itoh, Masayoshi, Kawaji, Hideya, Lassmann, Timo, Arner, Erik, Forrest, Alistair R R, Carninci, Piero, Hayashizaki, Yoshihide, Daub, Carsten O, Okada-Hatakeyama, Mariko, Mar, Jessica C

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Ageing‐related tau astrogliopathy severely affecting the substantia nigra by Tanaka, Hidetomo, Lee, Seojin, Martinez‐Valbuena, Ivan, Couto, Blas, Tartaglia, Maria Carmela, Gordoa, Javier Sanchez‐Ruiz, Erro, M. Elena, Lang, Anthony E., Forrest, Shelley L., Kovacs, Gabor G.

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Abstract 2897: Recurrent transcriptome alterations across multiple cancer types by Kaczkowski, Bogumil, Tanaka, Yuji, Kawaji, Hideya, Sandelin, Albin, Andersson, Robin, Itoh, Masayoshi, Lassmann, Timo, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R.R.

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Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation by Morikawa, Hiromasa, Ohkura, Naganari, Vandenbon, Alexis, Itoh, Masayoshi, Nagao-Sato, Sayaka, Kawaji, Hideya, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Standley, Daron M., Date, Hiroshi, Sakaguchi, Shimon

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