The Encyclopedia of DNA elements (ENCODE): data portal update by Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael

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ENCODE data in the UCSC Genome Browser: year 5 update by Rosenbloom, Kate R, Sloan, Cricket A, Malladi, Venkat S, Dreszer, Timothy R, Learned, Katrina, Kirkup, Vanessa M, Wong, Matthew C, Maddren, Morgan, Fang, Ruihua, Heitner, Steven G, Lee, Brian T, Barber, Galt P, Harte, Rachel A, Diekhans, Mark, Long, Jeffrey C, Wilder, Steven P, Zweig, Ann S, Karolchik, Donna, Kuhn, Robert M, Haussler, David, Kent, W James

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The UCSC Genome Browser database: extensions and updates 2013 by Meyer, Laurence R, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Kuhn, Robert M, Wong, Matthew, Sloan, Cricket A, Rosenbloom, Kate R, Roe, Greg, Rhead, Brooke, Raney, Brian J, Pohl, Andy, Malladi, Venkat S, Li, Chin H, Lee, Brian T, Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M, Fujita, Pauline A, Dreszer, Timothy R, Diekhans, Mark, Cline, Melissa S, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W James

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An Automated, Home-Cage, Video Monitoring-based Mouse Frailty Index Detects Age-associated Morbidity in C57BL/6 and Diversity Outbred Mice by Ruby, J Graham, Di Francesco, Andrea, Ylagan, Paulo, Luo, Angela, Keyser, Robert, Williams, Owen, Spock, Sarah, Li, Wenzhou, Vongtharangsy, Nalien, Chatterjee, Sandip, Sloan, Cricket A, Ledogar, Charles, Kuiper, Veronica, Kite, Janessa, Cosino, Marcelo, Cha, Paulyn, Karlsson, Eleanor M

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ENCODE data at the ENCODE portal by Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg, Podduturi, Nikhil R, Tanaka, Forrest, Hong, Eurie L, Cherry, J Michael

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The UCSC Genome Browser database: 2014 update by Karolchik, Donna, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Dreszer, Timothy R, Fujita, Pauline A, Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A, Heitner, Steve, Hinrichs, Angie S, Learned, Katrina, Lee, Brian T, Li, Chin H, Raney, Brian J, Rhead, Brooke, Rosenbloom, Kate R, Sloan, Cricket A, Speir, Matthew L, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

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A benchmark for RNA-seq quantification pipelines by Teng, Mingxiang, Love, Michael I, Davis, Carrie A, Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R, Li, Sheng, Mason, Christopher E, Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A, Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A

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ENCODE whole-genome data in the UCSC Genome Browser: update 2012 by Rosenbloom, Kate R., Dreszer, Timothy R., Long, Jeffrey C., Malladi, Venkat S., Sloan, Cricket A., Raney, Brian J., Cline, Melissa S., Karolchik, Donna, Barber, Galt P., Clawson, Hiram, Diekhans, Mark, Fujita, Pauline A., Goldman, Mary, Gravell, Robert C., Harte, Rachel A., Hinrichs, Angie S., Kirkup, Vanessa M., Kuhn, Robert M., Learned, Katrina, Maddren, Morgan, Meyer, Laurence R., Pohl, Andy, Rhead, Brooke, Wong, Matthew C., Zweig, Ann S., Haussler, David, Kent, W. James

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ENCODE whole-genome data in the UCSC genome browser (2011 update) by Raney, Brian J, Cline, Melissa S, Rosenbloom, Kate R, Dreszer, Timothy R, Learned, Katrina, Barber, Galt P, Meyer, Laurence R, Sloan, Cricket A, Malladi, Venkat S, Roskin, Krishna M, Suh, Bernard B, Hinrichs, Angie S, Clawson, Hiram, Zweig, Ann S, Kirkup, Vanessa, Fujita, Pauline A, Rhead, Brooke, Smith, Kayla E, Pohl, Andy, Kuhn, Robert M, Karolchik, Donna, Haussler, David, Kent, W. James

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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata by Hitz, Benjamin C, Rowe, Laurence D, Podduturi, Nikhil R, Glick, David I, Baymuradov, Ulugbek K, Malladi, Venkat S, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Narayana, Aditi K, Onate, Kathrina C, Hilton, Jason, Ho, Marcus C, Lee, Brian T, Miyasato, Stuart R, Dreszer, Timothy R, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest Y, Hong, Eurie L, Cherry, J Michael

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Erratum to: A benchmark for RNA-seq quantification pipelines by Teng, Mingxiang, Love, Michael I, Davis, Carrie A, Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R, Li, Sheng, Mason, Christopher E, Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A, Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A

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Erratum to: A benchmark for RNA-seq quantification pipelines by Teng, Mingxiang, Love, Michael I, Davis, Carrie A, Djebali, Sarah, Dobin, Alexander, Graveley, Brenton R, Li, Sheng, Mason, Christopher E, Olson, Sara, Pervouchine, Dmitri, Sloan, Cricket A, Wei, Xintao, Zhan, Lijun, Irizarry, Rafael A

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Principles of metadata organization at the ENCODE data coordination center by Hong, Eurie L, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg R, Podduturi, Nikhil R, Tanaka, Forrest, Hilton, Jason A, Cherry, J Michael

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Ontology application and use at the ENCODE DCC by Malladi, Venkat S, Erickson, Drew T, Podduturi, Nikhil R, Rowe, Laurence D, Chan, Esther T, Davidson, Jean M, Hitz, Benjamin C, Ho, Marcus, Lee, Brian T, Miyasato, Stuart, Roe, Gregory R, Simison, Matt, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest, Kent, W James, Cherry, J Michael, Hong, Eurie L

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Prevention of data duplication for high throughput sequencing repositories by Gabdank, Idan, Chan, Esther T, Davidson, Jean M, Hilton, Jason A, Davis, Carrie A, Baymuradov, Ulugbek K, Narayanan, Aditi, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Hitz, Benjamin C, Sloan, Cricket A, Cherry, J Michael

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Principles of regulatory information conservation between mouse and human by Cheng, Yong, Ma, Zhihai, Kim, Bong-Hyun, Wu, Weisheng, Cayting, Philip, Boyle, Alan P, Sundaram, Vasavi, Xing, Xiaoyun, Dogan, Nergiz, Li, Jingjing, Euskirchen, Ghia, Lin, Shin, Lin, Yiing, Visel, Axel, Kawli, Trupti, Yang, Xinqiong, Patacsil, Dorrelyn, Keller, Cheryl A, Giardine, Belinda, Kundaje, Anshul, Wang, Ting, Pennacchio, Len A, Weng, Zhiping, Hardison, Ross C, Snyder, Michael P

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The UCSC Genome Browser database: extensions and updates 2011 by Dreszer, Timothy R., Karolchik, Donna, Zweig, Ann S., Hinrichs, Angie S., Raney, Brian J., Kuhn, Robert M., Meyer, Laurence R., Wong, Mathew, Sloan, Cricket A., Rosenbloom, Kate R., Roe, Greg, Rhead, Brooke, Pohl, Andy, Malladi, Venkat S., Li, Chin H., Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Harte, Rachel A., Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M., Fujita, Pauline A., Diekhans, Mark, Cline, Melissa S., Clawson, Hiram, Barber, Galt P., Haussler, David, James Kent, W.

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The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models by Rozowsky, Joel, Gao, Jiahao, Borsari, Beatrice, Yang, Yucheng T., Galeev, Timur, Gürsoy, Gamze, Epstein, Charles B., Xiong, Kun, Xu, Jinrui, Li, Tianxiao, Liu, Jason, Yu, Keyang, Berthel, Ana, Chen, Zhanlin, Navarro, Fabio, Sun, Maxwell S., Wright, James, Chang, Justin, Cameron, Christopher J.F., Shoresh, Noam, Gaskell, Elizabeth, Drenkow, Jorg, Adrian, Jessika, Aganezov, Sergey, Aguet, François, Balderrama-Gutierrez, Gabriela, Banskota, Samridhi, Corona, Guillermo Barreto, Chhetri, Surya B., Cortez Martins, Gabriel Conte, Danyko, Cassidy, Davis, Carrie A., Farid, Daniel, Farrell, Nina P., Gabdank, Idan, Gofin, Yoel, Gorkin, David U., Gu, Mengting, Hecht, Vivian, Hitz, Benjamin C., Jiang, Yunzhe, Kirsche, Melanie, Kong, Xiangmeng, Lam, Bonita R., Li, Shantao, Li, Bian, Li, Xiqi, Luo, Ruibang, Mackiewicz, Mark, Meng, Ran, Moore, Jill E., Mudge, Jonathan, Nelson, Nicholas, Nusbaum, Chad, Popov, Ioann, Pratt, Henry E., Qiu, Yunjiang, Ramakrishnan, Srividya, Raymond, Joe, Salichos, Leonidas, Scavelli, Alexandra, Schreiber, Jacob M., Sedlazeck, Fritz J., See, Lei Hoon, Sherman, Rachel M., Shi, Xu, Shi, Minyi, Sloan, Cricket Alicia, Strattan, J Seth, Tan, Zhen, Tanaka, Forrest Y., Vlasova, Anna, Wang, Jun, Werner, Jonathan, Williams, Brian, Xu, Min, Yan, Chengfei, Yu, Lu, Zaleski, Christopher, Zhang, Jing, Ardlie, Kristin, Cherry, J Michael, Mendenhall, Eric M., Noble, William S., Weng, Zhiping, Levine, Morgan E., Dobin, Alexander, Wold, Barbara, Mortazavi, Ali, Ren, Bing, Gillis, Jesse, Myers, Richard M., Snyder, Michael P., Choudhary, Jyoti, Milosavljevic, Aleksandar, Schatz, Michael C., Bernstein, Bradley E., Guigó, Roderic, Gingeras, Thomas R., Gerstein, Mark

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