Revisiting Theoretical Tools and Approaches for the Valorization of Recalcitrant Lignocellulosic Biomass to Value-Added Chemicals

by Pham, Le Thanh Mai, Choudhary, Hemant, Gauttam, Rahul, Singer, Steven W., Gladden, John M., Simmons, Blake A., Singh, Seema, Sale, Kenneth L.
Published in Frontiers in energy research

Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides

by Kim, Joonhoon, Coradetti, Samuel T, Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D, Munoz, Nathalie, Zink, Erika M, Burnum-Johnson, Kristin E, Baker, Scott E, Simmons, Blake A, Skerker, Jeffrey M, Gladden, John M, Magnuson, Jon K
Published in Frontiers in bioengineering and biotechnology

Phenothiazines Rapidly Induce Laccase Expression and Lignin-Degrading Properties in the White-Rot Fungus Phlebia radiata

by Hirakawa, Matthew P, Rodriguez, Alberto, Tran-Gyamfi, Mary B, Light, Yooli K, Martinez, Salvador, Diamond-Pott, Henry, Simmons, Blake A, Sale, Kenneth L
Published in Journal of fungi (Basel)

Development of a native Escherichia coli induction system for ionic liquid tolerance

by Frederix, Marijke, Hütter, Kimmo, Leu, Jessica, Batth, Tanveer S, Turner, William J, Rüegg, Thomas L, Blanch, Harvey W, Simmons, Blake A, Adams, Paul D, Keasling, Jay D, Thelen, Michael P, Dunlop, Mary J, Petzold, Christopher J, Mukhopadhyay, Aindrila
Published in PloS one

Structural and chemical characterization of hardwood from tree species with applications as bioenergy feedstocks

by Cetinkol, Özgül Persil, Smith-Moritz, Andreia M, Cheng, Gang, Lao, Jeemeng, George, Anthe, Hong, Kunlun, Henry, Robert, Simmons, Blake A, Heazlewood, Joshua L, Holmes, Bradley M
Published in PloS one

Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida

by Gauttam, Rahul, Eng, Thomas, Zhao, Zhiying, ul ain Rana, Qurrat, Simmons, Blake A., Yoshikuni, Yasuo, Mukhopadhyay, Aindrila, Singer, Steven W.
Published in Microbial biotechnology

An insulator-based (electrodeless) dielectrophoretic concentrator for microbes in water

by Lapizco-Encinas, Blanca H., Davalos, Rafael V., Simmons, Blake A., Cummings, Eric B., Fintschenko, Yolanda
Published in Journal of microbiological methods

Evaluation of engineered low-lignin poplar for conversion into advanced bioproducts

by Lin, Chien-Yuan, Geiselman, Gina M, Liu, Di, Magurudeniya, Harsha D, Rodriguez, Alberto, Chen, Yi-Chun, Pidatala, Venkataramana, Unda, Faride, Amer, Bashar, Baidoo, Edward E K, Mansfield, Shawn D, Simmons, Blake A, Singh, Seema, Scheller, Henrik V, Gladden, John M, Eudes, Aymerick
Published in Biotechnology for biofuels and bioproducts

Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment

by Varanasi, Patanjali, Singh, Priyanka, Auer, Manfred, Adams, Paul D, Simmons, Blake A, Singh, Seema
Published in Biotechnology for biofuels

Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control

by Ruegg, Thomas L, Pereira, Jose H, Chen, Joseph C, DeGiovanni, Andy, Novichkov, Pavel, Mutalik, Vivek K, Tomaleri, Giovani P, Singer, Steven W, Hillson, Nathan J, Simmons, Blake A, Adams, Paul D, Thelen, Michael P
Published in Nature communications

Tolerance Characterization and Isoprenol Production of Adapted Escherichia coli in the Presence of Ionic Liquids

by Wang, Shizeng, Cheng, Gang, Dong, Jie, Tian, Tian, Lee, Taek Soon, Mukhopadhyay, Aindrila, Simmons, Blake A, Yuan, Qipeng, Singer, Steven W
Published in ACS sustainable chemistry & engineering

Co-production of ethanol, biogas, protein fodder and natural fertilizer in organic farming – Evaluation of a concept for a farm-scale biorefinery

by Oleskowicz-Popiel, Piotr, Kádár, Zsófia, Heiske, Stefan, Klein-Marcuschamer, Daniel, Simmons, Blake A., Blanch, Harvey W., Schmidt, Jens Ejbye
Published in Bioresource technology

Plant single-cell solutions for energy and the environment

by Cole, Benjamin, Bergmann, Dominique, Blaby-Haas, Crysten E, Blaby, Ian K, Bouchard, Kristofer E, Brady, Siobhan M, Ciobanu, Doina, Coleman-Derr, Devin, Leiboff, Samuel, Mortimer, Jenny C, Nobori, Tatsuya, Rhee, Seung Y, Schmutz, Jeremy, Simmons, Blake A, Singh, Anup K, Sinha, Neelima, Vogel, John P, O'Malley, Ronan C, Visel, Axel, Dickel, Diane E
Published in Communications biology

Tracing Determinants of Dual Substrate Specificity in Glycoside Hydrolase Family 5

by Chen, Zhiwei, Friedland, Gregory D., Pereira, Jose H., Reveco, Sonia A., Chan, Rosa, Park, Joshua I., Thelen, Michael P., Adams, Paul D., Arkin, Adam P., Keasling, Jay D., Blanch, Harvey W., Simmons, Blake A., Sale, Kenneth L., Chivian, Dylan, Chhabra, Swapnil R.
Published in The Journal of biological chemistry

Treatment of lignite and thermal coal with low cost amino acid based ionic liquid-water mixtures

by To, Trang Q., Shah, Kalpit, Tremain, Priscilla, Simmons, Blake A., Moghtaderi, Behdad, Atkin, Rob
Published in Fuel (Guildford)

Enzymatic hydrolysis of cellulose by the cellobiohydrolase domain of CelB from the hyperthermophilic bacterium Caldicellulosiruptor saccharolyticus

by Park, Joshua I., Kent, Michael S., Datta, Supratim, Holmes, Bradley M., Huang, Zhaohua, Simmons, Blake A., Sale, Kenneth L., Sapra, Rajat
Published in Bioresource technology

SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum

by Eudes, Aymerick, Dutta, Tanmoy, Deng, Kai, Jacquet, Nicolas, Sinha, Anagh, Benites, Veronica T, Baidoo, Edward E K, Richel, Aurore, Sattler, Scott E, Northen, Trent R, Singh, Seema, Simmons, Blake A, Loqué, Dominique
Published in PloS one

One-pot bio-derived ionic liquid conversion followed by hydrogenolysis reaction for biomass valorization: A promising approach affecting the morphology and quality of lignin of swi...

by Carrozza, Chiara Francesca, Papa, Gabriella, Citterio, Attilio, Sebastiano, Roberto, Simmons, Blake A., Singh, Seema
Published in Bioresource technology

Scale-Up of Ionic Liquid-Based Fractionation of Single and Mixed Feedstocks

by Li, Chenlin, Tanjore, Deepti, He, Wei, Wong, Jessica, Gardner, James L, Thompson, Vicki S, Yancey, Neal A, Sale, Kenneth L, Simmons, Blake A, Singh, Seema
Published in Bioenergy research

Next-generation biomass feedstocks for biofuel production

by Simmons, Blake A, Loque, Dominique, Blanch, Harvey W
Published in Genome biology