grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

by Jaillon, O, Aury, J.M, Noel, B, Policriti, A, Clepet, C, Casagrande, A, Choisne, N, Aubourg, S, Vitulo, N, Jubin, C
Published in Nature

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

by Duret, Laurent, Lepère, Gersende, Katinka, Michael, Bétermier, Mireille, Daubin, Vincent, Koll, France, Malinsky, Sophie, Dessen, Philippe, Scarpelli, Claude, Jubin, Claire, Billaut, Alain, Aiach, Nathalie, Beisson, Janine, Ségurens, Béatrice, Jaillon, Olivier, Kissmehl, Roland, Nowacki, Mariusz, Noel, Benjamin, Klotz, Catherine, Guigo, Roderic, Bouhouche, Khaled, Nowak, Jacek K, Meyer, Eric, Anthouard, Véronique, Arnaiz, Olivier, Zagulski, Marek, Wincker, Patrick, Aury, Jean-Marc, Cohen, Jean, Serrano, Vincent, Schächter, Vincent, Duharcourt, Sandra, Porcel, Betina M, Câmara, Francisco, Plattner, Helmut, Blanc, Isabelle, Poulain, Julie, Le Mouël, Anne, Weissenbach, Jean, Sperling, Linda, Keller, Anne-Marie, Gogendeau, Delphine, Ruiz, Françoise
Published in Nature

Differential Accumulation of Retroelements and Diversification of NB-LRR Disease Resistance Genes in Duplicated Regions following Polyploidy in the Ancestor of Soybean

by Innes, Roger W, Ameline-Torregrosa, Carine, Ashfield, Tom, Cannon, Ethalinda, Cannon, Steven B, Chacko, Ben, Chen, Nicolas W.G, Couloux, Arnaud, Dalwani, Anita, Denny, Roxanne, Deshpande, Shweta, Egan, Ashley N, Glover, Natasha, Hans, Christian S, Howell, Stacy, Ilut, Dan, Jackson, Scott, Lai, Hongshing, Mammadov, Jafar, del Campo, Sara Martin, Metcalf, Michelle, Nguyen, Ashley, O'Bleness, Majesta, Pfeil, Bernard E, Podicheti, Ram, Ratnaparkhe, Milind B, Samain, Sylvie, Sanders, Iryna, Ségurens, Béatrice, Sévignac, Mireille, Sherman-Broyles, Sue, Thareau, Vincent, Tucker, Dominic M, Walling, Jason, Wawrzynski, Adam, Yi, Jing, Doyle, Jeff J, Geffroy, Valérie, Roe, Bruce A, Maroof, M.A. Saghai, Young, Nevin D
Published in Plant physiology (Bethesda)

A Panoramic View of Gene Expression in the Human Kidney

by Chabardès-Garonne, Danielle, Méjean, Arnaud, Aude, Jean-Christophe, Cheval, Lydie, Di Stefano, Antonio, Gaillard, Marie-Claude, Imbert-Teboul, Martine, Wittner, Monika, Balian, Chanth, Anthouard, Véronique, Robert, Catherine, Ségurens, Béatrice, Wincker, Patrick, Weìssenbach, Jean, Doucet, Alain, Elalouf, Jean-Marc
Published in Proceedings of the National Academy of Sciences - PNAS

A tale of two oxidation states: bacterial colonization of arsenic-rich environments

by Muller, Daniel, Médigue, Claudine, Koechler, Sandrine, Barbe, Valérie, Barakat, Mohamed, Talla, Emmanuel, Bonnefoy, Violaine, Krin, Evelyne, Arsène-Ploetze, Florence, Carapito, Christine, Chandler, Michael, Cournoyer, Benoît, Cruveiller, Stéphane, Dossat, Caroline, Duval, Simon, Heymann, Michael, Leize, Emmanuelle, Lieutaud, Aurélie, Lièvremont, Didier, Makita, Yuko, Mangenot, Sophie, Nitschke, Wolfgang, Ortet, Philippe, Perdrial, Nicolas, Schoepp, Barbara, Siguier, Patricia, Simeonova, Diliana D, Rouy, Zoé, Segurens, Béatrice, Turlin, Evelyne, Vallenet, David, Van Dorsselaer, Alain, Weiss, Stéphanie, Weissenbach, Jean, Lett, Marie-Claire, Danchin, Antoine, Bertin, Philippe N
Published in PLoS genetics

Replication of Nonautonomous Retroelements in Soybean Appears to Be Both Recent and Common

by Wawrzynski, Adam, Ashfield, Tom, Chen, Nicolas W.G, Mammadov, Jafar, Nguyen, Ashley, Podicheti, Ram, Cannon, Steven B, Thareau, Vincent, Ameline-Torregrosa, Carine, Cannon, Ethalinda, Chacko, Ben, Couloux, Arnaud, Dalwani, Anita, Denny, Roxanne, Deshpande, Shweta, Egan, Ashley N, Glover, Natasha, Howell, Stacy, Ilut, Dan, Lai, Hongshing, del Campo, Sara Martin, Metcalf, Michelle, O'Bleness, Majesta, Pfeil, Bernard E, Ratnaparkhe, Milind B, Samain, Sylvie, Sanders, Iryna, Ségurens, Béatrice, Sévignac, Mireille, Sherman-Broyles, Sue, Tucker, Dominic M, Yi, Jing, Doyle, Jeff J, Geffroy, Valérie, Roe, Bruce A, Maroof, M.A. Saghai, Young, Nevin D, Innes, Roger W
Published in Plant physiology (Bethesda)

The genome sequence of the model ascomycete fungus Podospora anserina

by Espagne, Eric, Lespinet, Olivier, Malagnac, Fabienne, Da Silva, Corinne, Jaillon, Olivier, Porcel, Betina M, Couloux, Arnaud, Aury, Jean-Marc, Ségurens, Béatrice, Poulain, Julie, Anthouard, Véronique, Grossetete, Sandrine, Khalili, Hamid, Coppin, Evelyne, Déquard-Chablat, Michelle, Picard, Marguerite, Contamine, Véronique, Arnaise, Sylvie, Bourdais, Anne, Berteaux-Lecellier, Véronique, Gautheret, Daniel, de Vries, Ronald P, Battaglia, Evy, Coutinho, Pedro M, Danchin, Etienne Gj, Henrissat, Bernard, Khoury, Riyad El, Sainsard-Chanet, Annie, Boivin, Antoine, Pinan-Lucarré, Bérangère, Sellem, Carole H, Debuchy, Robert, Wincker, Patrick, Weissenbach, Jean, Silar, Philippe
Published in Genome Biology

Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia

by Giraud, Eric, Moulin, Lionel, Vallenet, David, Barbe, Valérie, Cytryn, Eddie, Avarre, Jean-Christophe, Jaubert, Marianne, Simon, Damien, Cartieaux, Fabienne, Prin, Yves, Bena, Gilles, Hannibal, Laure, Fardoux, Joel, Kojadinovic, Mila, Vuillet, Laurie, Lajus, Aurélie, Cruveiller, Stéphane, Rouy, Zoe, Mangenot, Sophie, Segurens, Béatrice, Dossat, Carole, Franck, William L, Chang, Woo-Suk, Saunders, Elizabeth, Bruce, David, Richardson, Paul, Normand, Philippe, Dreyfus, Bernard, Pignol, David, Stacey, Gary, Emerich, David, Verméglio, André, Médigue, Claudine, Sadowsky, Michael
Published in Science (American Association for the Advancement of Science)

The Medicago genome provides insight into the evolution of rhizobial symbioses

by Debellé, Frédéric, Oldroyd, Giles E D, Geurts, Rene, Benedito, Vagner A, Mayer, Klaus F X, Gouzy, Jérôme, Schoof, Heiko, Van de Peer, Yves, Proost, Sebastian, Cook, Douglas R, Spannagl, Manuel, De Mita, Stéphane, Krishnakumar, Vivek, Gundlach, Heidrun, Zhou, Shiguo, Mudge, Joann, Bharti, Arvind K, Murray, Jeremy D, Naoumkina, Marina A, Rosen, Benjamin, Silverstein, Kevin A T, Rombauts, Stephane, Zhao, Patrick X, Zhou, Peng, Barbe, Valérie, Bardou, Philippe, Bechner, Michael, Bellec, Arnaud, Berger, Anne, Bergès, Hélène, Bidwell, Shelby, Bisseling, Ton, Choisne, Nathalie, Couloux, Arnaud, Deshpande, Shweta, Dai, Xinbin, Doyle, Jeff J, Dudez, Anne-Marie, Farmer, Andrew D, Franken, Carolien, Goldstein, Steven, González, Alvaro J, Green, Pamela J, Hallab, Asis, Hartog, Marijke, Hua, Axin, Humphray, Sean J, Jeong, Dong-Hoon, Jing, Yi, Jöcker, Anika, Kenton, Steve M, Klee, Kathrin, Lai, Hongshing, Lin, Shaoping, Macmil, Simone L, Magdelenat, Ghislaine, Matthews, Lucy, McCorrison, Jamison, Najar, Fares Z, Nicholson, Christine, Noirot, Céline, Paule, Charles R, Prion, Florent, Qin, Baifang, Qu, Chunmei, Retzel, Ernest F, Riddle, Claire, Sallet, Erika, Samain, Sylvie, Samson, Nicolas, Saurat, Olivier, Scarpelli, Claude, Schiex, Thomas, Segurens, Béatrice, Sherrier, D Janine, Shi, Ruihua, Sims, Sarah, Singer, Susan R, Sinharoy, Senjuti, Sterck, Lieven, Viollet, Agnès, Wang, Bing-Bing, Wang, Keqin, Wang, Mingyi, Warfsmann, Jens, White, Doug D, White, Jim D, Wiley, Graham B, Wincker, Patrick, Yao, Ziyun, Zhai, Jixian, Zhou, Liping, Zuber, Antoine, Dénarié, Jean, Dixon, Richard A, May, Gregory D, Schwartz, David C, Quétier, Francis, Town, Christopher D, Roe, Bruce A
Published in Nature (London)

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

by Amselem, Joelle, Cuomo, Christina A, van Kan, Jan A L, Viaud, Muriel, Benito, Ernesto P, Couloux, Arnaud, Coutinho, Pedro M, de Vries, Ronald P, Dyer, Paul S, Fillinger, Sabine, Fournier, Elisabeth, Gout, Lilian, Hahn, Matthias, Kohn, Linda, Lapalu, Nicolas, Plummer, Kim M, Pradier, Jean-Marc, Quévillon, Emmanuel, Sharon, Amir, Simon, Adeline, ten Have, Arjen, Tudzynski, Bettina, Tudzynski, Paul, Wincker, Patrick, Andrew, Marion, Anthouard, Véronique, Beever, Ross E, Beffa, Rolland, Benoit, Isabelle, Bouzid, Ourdia, Brault, Baptiste, Chen, Zehua, Choquer, Mathias, Collémare, Jérome, Cotton, Pascale, Danchin, Etienne G, Da Silva, Corinne, Gautier, Angélique, Giraud, Corinne, Giraud, Tatiana, Gonzalez, Celedonio, Grossetete, Sandrine, Güldener, Ulrich, Henrissat, Bernard, Howlett, Barbara J, Kodira, Chinnappa, Kretschmer, Matthias, Lappartient, Anne, Leroch, Michaela, Levis, Caroline, Mauceli, Evan, Neuvéglise, Cécile, Oeser, Birgitt, Pearson, Matthew, Poulain, Julie, Poussereau, Nathalie, Quesneville, Hadi, Rascle, Christine, Schumacher, Julia, Ségurens, Béatrice, Sexton, Adrienne, Silva, Evelyn, Sirven, Catherine, Soanes, Darren M, Talbot, Nicholas J, Templeton, Matt, Yandava, Chandri, Yarden, Oded, Zeng, Qiandong, Rollins, Jeffrey A, Lebrun, Marc-Henri, Dickman, Marty
Published in PLoS genetics

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

by Pieretti, Isabelle, Royer, Monique, Barbe, Valérie, Carrere, Sébastien, Koebnik, Ralf, Cociancich, Stéphane, Couloux, Arnaud, Darrasse, Armelle, Gouzy, Jérôme, Jacques, Marie-Agnès, Lauber, Emmanuelle, Manceau, Charles, Mangenot, Sophie, Poussier, Stéphane, Segurens, Béatrice, Szurek, Boris, Verdier, Valérie, Arlat, Matthieu, Rott, Philippe
Published in BMC genomics

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

by Cock, J. Mark, Sterck, Lieven, Rouzé, Pierre, Scornet, Delphine, Allen, Andrew E, Amoutzias, Grigoris, Anthouard, Veronique, Artiguenave, François, Aury, Jean-Marc, Badger, Jonathan H, Beszteri, Bank, Billiau, Kenny, Bonnet, Eric, Bothwell, John H, Bowler, Chris, Boyen, Catherine, Brownlee, Colin, Carrano, Carl J, Charrier, Bénédicte, Cho, Ga Youn, Coelho, Susana M, Collén, Jonas, Corre, Erwan, Da Silva, Corinne, Delage, Ludovic, Delaroque, Nicolas, Dittami, Simon M, Doulbeau, Sylvie, Elias, Marek, Farnham, Garry, Gachon, Claire M. M, Gschloessl, Bernhard, Heesch, Svenja, Jabbari, Kamel, Jubin, Claire, Kawai, Hiroshi, Kimura, Kei, Kloareg, Bernard, Küpper, Frithjof C, Lang, Daniel, Le Bail, Aude, Leblanc, Catherine, Lerouge, Patrice, Lohr, Martin, Lopez, Pascal J, Martens, Cindy, Maumus, Florian, Michel, Gurvan, Miranda-Saavedra, Diego, Morales, Julia, Moreau, Hervé, Motomura, Taizo, Nagasato, Chikako, Napoli, Carolyn A, Nelson, David R, Nyvall-Collén, Pi, Peters, Akira F, Pommier, Cyril, Potin, Philippe, Poulain, Julie, Quesneville, Hadi, Read, Betsy, Rensing, Stefan A, Ritter, Andrés, Rousvoal, Sylvie, Samanta, Manoj, Samson, Gaelle, Schroeder, Declan C, Ségurens, Béatrice, Strittmatter, Martina, Tonon, Thierry, Tregear, James W, Valentin, Klaus, von Dassow, Peter, Yamagishi, Takahiro, Van de Peer, Yves, Wincker, Patrick
Published in Nature (London)

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

by Pieretti, Isabelle, Royer, Monique, Barbe, Valérie, Carrere, Sébastien, Koebnik, Ralf, Couloux, Arnaud, Darrasse, Armelle, Gouzy, Jérôme, Jacques, Marie-Agnès, Lauber, Emmanuelle, Manceau, Charles, Mangenot, Sophie, Poussier, Stéphane, Segurens, Béatrice, Szurek, Boris, Verdier, Valérie, Arlat, Matthieu, Gabriel, Dean W, Rott, Philippe, Cociancich, Stéphane
Published in BMC genomics

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

by Hamamouch, Noureddine, Castagnone-Sereno, Philippe, Flutre, Timothé, Steinbach, Delphine, Aury, Jean-Marc, Sallet, Erika, Anthouard, Véronique, Grenier, Eric, Poulain, Julie, Robinson-Rechavi, Marc, Abad, Pierre, Deau, Florence, Quesneville, Hadi, Magliano, Marc, Jones, John T, Pesole, Graziano, Blok, Vivian C, De Luca, Francesca, Caillaud, Marie-Cécile, Maier, Tom R, Weissenbach, Jean, Maule, Aaron G, Esquibet, Magali, Leonetti, Paola, Smant, Geert, Favery, Bruno, Blaxter, Mark, Jaillon, Olivier, Gouzy, Jérôme, Coutinho, Pedro M, Markov, Gabriel V, Henrissat, Bernard, Dasilva, Corinne, Veronico, Pasqua, Baum, Thomas J, van Ghelder, Cyril, Schiex, Thomas, Ewbank, Jonathan J, Hewezi, Tarek, Wincker, Patrick, Jubin, Claire, McVeigh, Paul, Tytgat, Tom, Ségurens, Béatrice, Bleve-Zacheo, Teresa, Davis, Eric L, Rosso, Marie-Noëlle, Artiguenave, François, Ugarte, Edgardo, Deleury, Emeline, Goldstone, Jared V, Danchin, Etienne G J, Perfus-Barbeoch, Laetitia, Laudet, Vincent
Published in Nature biotechnology

Dynamics and Differential Proliferation of Transposable Elements During the Evolution of the B and A Genomes of Wheat

by Charles, Mathieu, Belcram, Harry, Just, Jeremy, Huneau, Cecile, Viollet, Agnes, Couloux, Arnaud, Segurens, Beatrice, Carter, Meredith, Huteau, Virginie, Coriton, Olivier, Appels, Rudi, Samain, Sylvie, Chalhoub, Boulos
Published in Genetics (Austin)

Publisher Correction: The DNA sequence and analysis of human chromosome 14

by Heilig, Roland, Eckenberg, Ralph, Petit, Jean-Louis, Fonknechten, Núria, Da Silva, Corinne, Cattolico, Laurence, Levy, Michaël, Barbe, Valérie, de Berardinis, Véronique, Ureta-Vidal, Abel, Pelletier, Eric, Vico, Virginie, Anthouard, Véronique, Rowen, Lee, Madan, Anup, Qin, Shizhen, Sun, Hui, Du, Hui, Pepin, Kymberlie, Artiguenave, François, Robert, Catherine, Cruaud, Corinne, Brüls, Thomas, Jaillon, Olivier, Friedlander, Lucie, Samson, Gaelle, Brottier, Philippe, Cure, Susan, Ségurens, Béatrice, Anière, Franck, Samain, Sylvie, Crespeau, Hervé, Abbasi, Nissa, Aiach, Nathalie, Boscus, Didier, Dickhoff, Rachel, Dors, Monica, Dubois, Ivan, Friedman, Cynthia, Gouyvenoux, Michel, James, Rose, Madan, Anuradha, Mairey-Estrada, Barbara, Mangenot, Sophie, Martins, Nathalie, Ménard, Manuela, Oztas, Sophie, Ratcliffe, Amber, Shaffer, Tristan, Trask, Barbara, Vacherie, Benoit, Bellemere, Chadia, Belser, Caroline, Besnard-Gonnet, Marielle, Bartol-Mavel, Delphine, Boutard, Magali, Briez-Silla, Stéphanie, Combette, Stephane, Dufossé-Laurent, Virginie, Ferron, Carolyne, Lechaplais, Christophe, Louesse, Claudine, Muselet, Delphine, Magdelenat, Ghislaine, Pateau, Emilie, Petit, Emmanuelle, Sirvain-Trukniewicz, Peggy, Trybou, Arnaud, Vega-Czarny, Nathalie, Bataille, Elodie, Bluet, Elodie, Bordelais, Isabelle, Dubois, Maria, Dumont, Corinne, Guérin, Thomas, Haffray, Sébastien, Hammadi, Rachid, Muanga, Jacqueline, Pellouin, Virginie, Robert, Dominique, Wunderle, Edith, Gauguet, Gilbert, Roy, Alice, Sainte-Marthe, Laurent, Verdier, Jean, Verdier-Discala, Claude, Hillier, LaDeana, Fulton, Lucinda, McPherson, John, Matsuda, Fumihiko, Wilson, Richard, Scarpelli, Claude, Gyapay, Gábor, Wincker, Patrick, Saurin, William, Quétier, Francis, Waterston, Robert, Hood, Leroy, Weissenbach, Jean
Published in Nature (London)

Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes

by Hui, Jerome H L, Raible, Florian, Korchagina, Natalia, Dray, Nicolas, Samain, Sylvie, Magdelenat, Ghislaine, Jubin, Claire, Segurens, Béatrice, Balavoine, Guillaume, Arendt, Detlev, Ferrier, David E K
Published in BMC biology

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

by Dittami, Simon M, Scornet, Delphine, Petit, Jean-Louis, Ségurens, Béatrice, Da Silva, Corinne, Corre, Erwan, Dondrup, Michael, Glatting, Karl-Heinz, König, Rainer, Sterck, Lieven, Rouzé, Pierre, Van de Peer, Yves, Cock, J Mark, Boyen, Catherine, Tonon, Thierry
Published in Genome Biology

Comparative genomics of protoploid Saccharomycetaceae

by Souciet, Jean-Luc, Dujon, Bernard, Gaillardin, Claude, Johnston, Mark, Baret, Philippe V, Cliften, Paul, Sherman, David J, Weissenbach, Jean, Westhof, Eric, Wincker, Patrick, Jubin, Claire, Poulain, Julie, Barbe, Valérie, Ségurens, Béatrice, Artiguenave, François, Anthouard, Véronique, Vacherie, Benoit, Val, Marie-Eve, Fulton, Robert S, Minx, Patrick, Wilson, Richard, Durrens, Pascal, Jean, Géraldine, Marck, Christian, Martin, Tiphaine, Nikolski, Macha, Rolland, Thomas, Seret, Marie-Line, Casarégola, Serge, Despons, Laurence, Fairhead, Cécile, Fischer, Gilles, Lafontaine, Ingrid, Leh, Véronique, Lemaire, Marc, de Montigny, Jacky, Neuvéglise, Cécile, Thierry, Agnès, Blanc-Lenfle, Isabelle, Bleykasten, Claudine, Diffels, Julie, Fritsch, Emilie, Frangeul, Lionel, Goëffon, Adrien, Jauniaux, Nicolas, Kachouri-Lafond, Rym, Payen, Célia, Potier, Serge, Pribylova, Lenka, Ozanne, Christophe, Richard, Guy-Franck, Sacerdot, Christine, Straub, Marie-Laure, Talla, Emmanuel
Published in Genome Research

New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides

by Salse, Jérome, Chagué, Véronique, Bolot, Stéphanie, Magdelenat, Ghislaine, Huneau, Cécile, Pont, Caroline, Belcram, Harry, Couloux, Arnaud, Gardais, Soazic, Evrard, Aurélie, Segurens, Béatrice, Charles, Mathieu, Ravel, Catherine, Samain, Sylvie, Charmet, Gilles, Boudet, Nathalie, Chalhoub, Boulos
Published in BMC genomics