Genome-wide insights into human population structure

by Gallego Romero, Irene
Published in Nature reviews. Genetics

RNA-seq: impact of RNA degradation on transcript quantification

by Gallego Romero, Irene, Pai, Athma A, Tung, Jenny, Gilad, Yoav
Published in BMC biology

Leveraging massively parallel reporter assays for evolutionary questions

by Gallego Romero, Irene, Lea, Amanda J
Published in Genome Biology

Genetic Variation, Not Cell Type of Origin, Underlies the Majority of Identifiable Regulatory Differences in iPSCs

by Burrows, Courtney K, Banovich, Nicholas E, Pavlovic, Bryan J, Patterson, Kristen, Gallego Romero, Irene, Pritchard, Jonathan K, Gilad, Yoav
Published in PLoS genetics

Denisovan introgression has shaped the immune system of present-day Papuans

by Vespasiani, Davide M, Jacobs, Guy S, Cook, Laura E, Brucato, Nicolas, Leavesley, Matthew, Kinipi, Christopher, Ricaut, François-Xavier, Cox, Murray P, Gallego Romero, Irene
Published in PLoS genetics

Ethiopian Genetic Diversity Reveals Linguistic Stratification and Complex Influences on the Ethiopian Gene Pool

by Pagani, Luca, Kivisild, Toomas, Tarekegn, Ayele, Ekong, Rosemary, Plaster, Chris, Gallego Romero, Irene, Ayub, Qasim, Mehdi, S. Qasim, Thomas, Mark G., Luiselli, Donata, Bekele, Endashaw, Bradman, Neil, Balding, David J., Tyler-Smith, Chris
Published in American journal of human genetics

Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia

by Metspalu, Mait, Romero, Irene Gallego, Yunusbayev, Bayazit, Chaubey, Gyaneshwer, Mallick, Chandana Basu, Hudjashov, Georgi, Nelis, Mari, Mägi, Reedik, Metspalu, Ene, Remm, Maido, Pitchappan, Ramasamy, Singh, Lalji, Thangaraj, Kumarasamy, Villems, Richard, Kivisild, Toomas
Published in American journal of human genetics

Increased risk of genetic and epigenetic instability in human embryonic stem cells associated with specific culture conditions

by Garitaonandia, Ibon, Amir, Hadar, Boscolo, Francesca Sesillo, Wambua, Gerald K, Schultheisz, Heather L, Sabatini, Karen, Morey, Robert, Waltz, Shannon, Wang, Yu-Chieh, Tran, Ha, Leonardo, Trevor R, Nazor, Kristopher, Slavin, Ileana, Lynch, Candace, Li, Yingchun, Coleman, Ronald, Gallego Romero, Irene, Altun, Gulsah, Reynolds, David, Dalton, Stephen, Parast, Mana, Loring, Jeanne F, Laurent, Louise C
Published in PloS one

A panel of induced pluripotent stem cells from chimpanzees: a resource for comparative functional genomics

by Gallego Romero, Irene, Pavlovic, Bryan J, Hernando-Herraez, Irene, Zhou, Xiang, Ward, Michelle C, Banovich, Nicholas E, Kagan, Courtney L, Burnett, Jonathan E, Huang, Constance H, Mitrano, Amy, Chavarria, Claudia I, Friedrich Ben-Nun, Inbar, Li, Yingchun, Sabatini, Karen, Leonardo, Trevor R, Parast, Mana, Marques-Bonet, Tomas, Laurent, Louise C, Loring, Jeanne F, Gilad, Yoav
Published in eLife

Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago

by Natri, Heini M, Bobowik, Katalina S, Kusuma, Pradiptajati, Crenna Darusallam, Chelzie, Jacobs, Guy S, Hudjashov, Georgi, Lansing, J Stephen, Sudoyo, Herawati, Banovich, Nicholas E, Cox, Murray P, Gallego Romero, Irene
Published in PLoS genetics

Seeing humans through an evolutionary lens

by Romero, Irene Gallego
Published in Science (American Association for the Advancement of Science)

Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul

by Brucato, Nicolas, André, Mathilde, Tsang, Roxanne, Saag, Lauri, Kariwiga, Jason, Sesuki, Kylie, Beni, Teppsy, Pomat, William, Muke, John, Meyer, Vincent, Boland, Anne, Deleuze, Jean-François, Sudoyo, Herawati, Mondal, Mayukh, Pagani, Luca, Gallego Romero, Irene, Metspalu, Mait, Cox, Murray P, Leavesley, Matthew, Ricaut, François-Xavier
Published in Molecular biology and evolution

The light skin allele of SLC24A5 in South Asians and Europeans shares identity by descent

by Basu Mallick, Chandana, Iliescu, Florin Mircea, Möls, Märt, Hill, Sarah, Tamang, Rakesh, Chaubey, Gyaneshwer, Goto, Rie, Ho, Simon Y W, Gallego Romero, Irene, Crivellaro, Federica, Hudjashov, Georgi, Rai, Niraj, Metspalu, Mait, Mascie-Taylor, C G Nicholas, Pitchappan, Ramasamy, Singh, Lalji, Mirazon-Lahr, Marta, Thangaraj, Kumarasamy, Villems, Richard, Kivisild, Toomas
Published in PLoS genetics

Harnessing pluripotent stem cells as models to decipher human evolution

by Dannemann, Michael, Gallego Romero, Irene
Published in The FEBS journal

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

by Mallick, Swapan, Li, Heng, Lipson, Mark, Mathieson, Iain, Gymrek, Melissa, Racimo, Fernando, Zhao, Mengyao, Chennagiri, Niru, Nordenfelt, Susanne, Tandon, Arti, Skoglund, Pontus, Lazaridis, Iosif, Sankararaman, Sriram, Fu, Qiaomei, Rohland, Nadin, Renaud, Gabriel, Erlich, Yaniv, Willems, Thomas, Gallo, Carla, Spence, Jeffrey P, Song, Yun S, Poletti, Giovanni, Balloux, Francois, van Driem, George, de Knijff, Peter, Romero, Irene Gallego, Jha, Aashish R, Behar, Doron M, Bravi, Claudio M, Capelli, Cristian, Hervig, Tor, Moreno-Estrada, Andres, Posukh, Olga L, Balanovska, Elena, Balanovsky, Oleg, Karachanak-Yankova, Sena, Sahakyan, Hovhannes, Toncheva, Draga, Yepiskoposyan, Levon, Tyler-Smith, Chris, Xue, Yali, Abdullah, M Syafiq, Ruiz-Linares, Andres, Beall, Cynthia M, Di Rienzo, Anna, Jeong, Choongwon, Starikovskaya, Elena B, Metspalu, Ene, Parik, Jüri, Villems, Richard, Henn, Brenna M, Hodoglugil, Ugur, Mahley, Robert, Sajantila, Antti, Stamatoyannopoulos, George, Wee, Joseph T S, Khusainova, Rita, Khusnutdinova, Elza, Litvinov, Sergey, Ayodo, George, Comas, David, Hammer, Michael F, Kivisild, Toomas, Klitz, William, Winkler, Cheryl A, Labuda, Damian, Bamshad, Michael, Jorde, Lynn B, Tishkoff, Sarah A, Watkins, W Scott, Metspalu, Mait, Dryomov, Stanislav, Sukernik, Rem, Singh, Lalji, Thangaraj, Kumarasamy, Pääbo, Svante, Kelso, Janet, Patterson, Nick, Reich, David
Published in Nature (London)

Genetic Diversity in Chimpanzee Transcriptomics Does Not Represent Wild Populations

by Shukla, Navya, Shaban, Bobbie, Gallego Romero, Irene
Published in Genome biology and evolution

Ancient human genomes suggest three ancestral populations for present-day Europeans

by Lazaridis, Iosif, Patterson, Nick, Mittnik, Alissa, Renaud, Gabriel, Mallick, Swapan, Kirsanow, Karola, Schraiber, Joshua G, Castellano, Sergi, Lipson, Mark, Berger, Bonnie, Economou, Christos, Bollongino, Ruth, Fu, Qiaomei, Bos, Kirsten I, Nordenfelt, Susanne, Li, Heng, de Filippo, Cesare, Prüfer, Kay, Posth, Cosimo, Haak, Wolfgang, Hallgren, Fredrik, Fornander, Elin, Rohland, Nadin, Francken, Michael, Guinet, Jean-Michel, Wahl, Joachim, Ayodo, George, Babiker, Hamza A, Bailliet, Graciela, Balanovska, Elena, Balanovsky, Oleg, Barrantes, Ramiro, Bedoya, Gabriel, Bene, Judit, Berrada, Fouad, Brisighelli, Francesca, Busby, George B J, Corach, Daniel, Damba, Larissa, van Driem, George, Dugoujon, Jean-Michel, Gallego Romero, Irene, Gubina, Marina, Henn, Brenna M, Hervig, Tor, Hodoglugil, Ugur, Jha, Aashish R, Karachanak-Yankova, Sena, Khusnutdinova, Elza, Kittles, Rick, Kivisild, Toomas, Klitz, William, Kučinskas, Vaidutis, Kushniarevich, Alena, Litvinov, Sergey, Loukidis, Theologos, Mahley, Robert W, Metspalu, Ene, Molina, Julio, Mountain, Joanna, Nesheva, Desislava, Nyambo, Thomas, Parik, Jüri, Platonov, Fedor, Rothhammer, Francisco, Rudan, Igor, Ruizbakiev, Ruslan, Sahakyan, Hovhannes, Sajantila, Antti, Salas, Antonio, Starikovskaya, Elena B, Tarekegn, Ayele, Toncheva, Draga, Turdikulova, Shahlo, Uktveryte, Ingrida, Utevska, Olga, Vasquez, René, Villena, Mercedes, Voevoda, Mikhail, Winkler, Cheryl A, Zalloua, Pierre, Zemunik, Tatijana, Cooper, Alan, Capelli, Cristian, Thomas, Mark G, Ruiz-Linares, Andres, Tishkoff, Sarah A, Singh, Lalji, Thangaraj, Kumarasamy, Villems, Richard, Comas, David, Sukernik, Rem, Metspalu, Mait, Meyer, Matthias, Eichler, Evan E, Burger, Joachim, Pääbo, Svante, Kelso, Janet, Reich, David, Krause, Johannes
Published in Nature (London)

A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

by MacArthur, Daniel G., Balasubramanian, Suganthi, Frankish, Adam, Huang, Ni, Morris, James, Walter, Klaudia, Jostins, Luke, Habegger, Lukas, Pickrell, Joseph K., Montgomery, Stephen B., Albers, Cornelis A., Zhang, Zhengdong D., Conrad, Donald F., Lunter, Gerton, Zheng, Hancheng, Ayub, Qasim, DePristo, Mark A., Banks, Eric, Hu, Min, Handsaker, Robert E., Rosenfeld, Jeffrey A., Fromer, Menachem, Jin, Mike, Mu, Xinmeng Jasmine, Khurana, Ekta, Ye, Kai, Kay, Mike, Saunders, Gary Ian, Suner, Marie-Marthe, Hunt, Toby, Barnes, H. A., Amid, Clara, Carvalho-Silva, Denise R., Bignell, Alexandra H., Snow, Catherine, Yngvadottir, Bryndis, Bumpstead, Suzannah, Cooper, David N., Xue, Yali, Romero, Irene Gallego, Wang, Jun, Li, Yingrui, Gibbs, Richard A., McCarroll, Steven A., Dermitzakis, Emmanouil T., Pritchard, Jonathan K., Barrett, Jeffrey C., Harrow, Jennifer, Hurles, Matthew E., Gerstein, Mark B., Tyler-Smith, Chris
Published in Science (American Association for the Advancement of Science)

Global diversity, population stratification, and selection of human copy-number variation

by Sudmant, Peter H., Mallick, Swapan, Nelson, Bradley J., Hormozdiari, Fereydoun, Krumm, Niklas, Huddleston, John, Coe, Bradley P., Baker, Carl, Nordenfelt, Susanne, Bamshad, Michael, Jorde, Lynn B., Posukh, Olga L., Sahakyan, Hovhannes, Watkins, W. Scott, Yepiskoposyan, Levon, Abdullah, M. Syafiq, Bravi, Claudio M., Capelli, Cristian, Hervig, Tor, Wee, Joseph T. S., Tyler-Smith, Chris, van Driem, George, Romero, Irene Gallego, Jha, Aashish R., Karachanak-Yankova, Sena, Toncheva, Draga, Comas, David, Henn, Brenna, Kivisild, Toomas, Ruiz-Linares, Andres, Sajantila, Antti, Metspalu, Ene, Parik, Jüri, Villems, Richard, Starikovskaya, Elena B., Ayodo, George, Beall, Cynthia M., Di Rienzo, Anna, Hammer, Michael F., Khusainova, Rita, Khusnutdinova, Elza, Klitz, William, Winkler, Cheryl, Labuda, Damian, Metspalu, Mait, Tishkoff, Sarah A., Dryomov, Stanislav, Sukernik, Rem, Patterson, Nick, Reich, David, Eichler, Evan E.
Published in Science (American Association for the Advancement of Science)

Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries

by Natri, Heini M., Hudjashov, Georgi, Jacobs, Guy, Kusuma, Pradiptajati, Saag, Lauri, Darusallam, Chelzie Crenna, Metspalu, Mait, Sudoyo, Herawati, Cox, Murray P., Gallego Romero, Irene, Banovich, Nicholas E.
Published in American journal of human genetics