An Autoantigen Atlas From Human Lung HFL1 Cells Offers Clues to Neurological and Diverse Autoimmune Manifestations of COVID-19 by Wang, Julia Y, Zhang, Wei, Roehrl, Victor B, Roehrl, Michael W, Roehrl, Michael H

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An autoantigen profile of human A549 lung cells reveals viral and host etiologic molecular attributes of autoimmunity in COVID-19 by Wang, Julia Y., Zhang, Wei, Roehrl, Michael W., Roehrl, Victor B., Roehrl, Michael H.

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Sensitive tumour detection and classification using plasma cell-free DNA methylomes by Shen, Shu Yi, Singhania, Rajat, Fehringer, Gordon, Chakravarthy, Ankur, Roehrl, Michael H A, Chadwick, Dianne, Zuzarte, Philip C, Borgida, Ayelet, Wang, Ting Ting, Li, Tiantian, Kis, Olena, Zhao, Zhen, Spreafico, Anna, Medina, Tiago da Silva, Wang, Yadon, Roulois, David, Ettayebi, Ilias, Chen, Zhuo, Chow, Signy, Murphy, Tracy, Arruda, Andrea, O'Kane, Grainne M, Liu, Jessica, Mansour, Mark, McPherson, John D, O'Brien, Catherine, Leighl, Natasha, Bedard, Philippe L, Fleshner, Neil, Liu, Geoffrey, Minden, Mark D, Gallinger, Steven, Goldenberg, Anna, Pugh, Trevor J, Hoffman, Michael M, Bratman, Scott V, Hung, Rayjean J, De Carvalho, Daniel D

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A repertoire of 124 potential autoantigens for autoimmune kidney diseases identified by dermatan sulfate affinity enrichment of kidney tissue proteins by Zhang, Wei, Rho, Jung-Hyun, Roehrl, Michael W, Roehrl, Michael H, Wang, Julia Y

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Mass spectrometry-based absolute quantification of amyloid proteins in pathology tissue specimens: Merits and limitations by Ogawa, Makiko, Shintani-Domoto, Yukako, Nagashima, Yoshiki, Ode, Koji L, Sato, Aya, Shimizu, Yoshihiro, Ohashi, Kenichi, Roehrl, Michael H. A, Ushiku, Tetsuo, Ueda, Hiroki R, Fukayama, Masashi, Mischak, Harald

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A master autoantigen-ome links alternative splicing, female predilection, and COVID-19 to autoimmune diseases by Wang, Julia Y., Roehrl, Michael W., Roehrl, Victor B., Roehrl, Michael H.

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Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project by Omenn, Gilbert S, Lane, Lydie, Overall, Christopher M, Paik, Young-Ki, Cristea, Ileana M, Corrales, Fernando J, Lindskog, Cecilia, Weintraub, Susan, Roehrl, Michael H. A, Liu, Siqi, Bandeira, Nuno, Srivastava, Sudhir, Chen, Yu-Ju, Aebersold, Ruedi, Moritz, Robert L, Deutsch, Eric W

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Tumor stromal nicotinamide N-methyltransferase overexpression as a prognostic biomarker for poor clinical outcome in early-stage colorectal cancer by Ogawa, Makiko, Tanaka, Atsushi, Namba, Kei, Shia, Jinru, Wang, Julia Y, Roehrl, Michael H A

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Propensity score matching as an effective strategy for biomarker cohort design and omics data analysis by Maekawa, Masaki, Tanaka, Atsushi, Ogawa, Makiko, Roehrl, Michael H

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STAT1 as a potential prognosis marker for poor outcomes of early stage colorectal cancer with microsatellite instability by Tanaka, Atsushi, Zhou, Yihua, Ogawa, Makiko, Shia, Jinru, Klimstra, David S, Wang, Julia Y, Roehrl, Michael H

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A General Framework for Development and Data Analysis of Competitive High-Throughput Screens for Small-Molecule Inhibitors of Protein−Protein Interactions by Fluorescence Polarizat... by Roehrl, Michael H. A, Wang, Julia Y, Wagner, Gerhard

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Tissue Proteomics Reveals Differential and Compartment-Specific Expression of the Homologs Transgelin and Transgelin-2 in Lung Adenocarcinoma and Its Stroma by Rho, Jung-hyun, Roehrl, Michael H. A, Wang, Julia Y

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The 2022 Report on the Human Proteome from the HUPO Human Proteome Project by Omenn, Gilbert S., Lane, Lydie, Overall, Christopher M., Pineau, Charles, Packer, Nicolle H., Cristea, Ileana M., Lindskog, Cecilia, Weintraub, Susan T., Orchard, Sandra, Roehrl, Michael H. A., Nice, Edouard, Liu, Siqi, Bandeira, Nuno, Chen, Yu-Ju, Guo, Tiannan, Aebersold, Ruedi, Moritz, Robert L., Deutsch, Eric W.

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Technical report: The clinically useful selection of proteins protocol: An approach to identify clinically useful proteins for validation by Swaney, Ella E.K., Hearps, Stephen, Monagle, Paul, Roehrl, Michael H.A., Ignjatovic, Vera

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Pancreatoblastomas and mixed and pure acinar cell carcinomas share epigenetic signatures distinct from other neoplasms of the pancreas by Benhamida, Jamal K., Vyas, Monika, Tanaka, Atsushi, Wang, Lu, Bahrami, Armita, Ozcan, Kerem, Basturk, Olca, Villafania, Liliana, Mata, Douglas A., El Jabbour, Tony, Selenica, Pier, Roehrl, M.H.A., Weigelt, Britta, Reis-Filho, Jorge S., Scaltriti, Maurizio, Klimstra, David S.

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Proteogenomic characterization of pancreatic ductal adenocarcinoma by Cao, Liwei, Huang, Chen, Cui Zhou, Daniel, Hu, Yingwei, Savage, Sara R., Krug, Karsten, Schnaubelt, Michael, Eguez, Rodrigo Vargas, Yang, Weiming, Pan, Jianbo, Wen, Bo, Jiang, Wen, Liao, Yuxing, Terekhanova, Nadezhda V., Cao, Song, Lu, Rita Jui-Hsien, Liu, Ruiyang, Zhu, Houxiang, Wu, Yige, Easwaran, Hariharan, Yoo, Seungyeul, Liu, Wenke, Haibe-Kains, Benjamin, Thiagarajan, Mathangi, Jewell, Scott D., Hostetter, Galen, Li, Qing Kay, Fenyö, David, Wang, Pei, Mani, D.R., Omenn, Gilbert S., Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Chan, Daniel W., Hruban, Ralph H., Ding, Li, Zhang, Hui, Amin, Mitual, An, Eunkyung, Bauer, Thomas, Birger, Chet, Birrer, Michael J., Bocik, William, Borucki, Melissa, Carr, Steven A., Cerda, Sandra, Chen, Huan, Chen, Steven, Chesla, David, Chinnaiyan, Arul M., Colaprico, Antonio, Cottingham, Sandra, Derejska, Magdalena, Dhanasekaran, Saravana M., Domagalski, Marcin J., Edwards, Nathan J., Francis, Alicia, Francis, Jesse, Gabriel, Stacey, Gabrovski, Nikolay, Gardner, Johanna, Getz, Gad, Goldthwaite, Charles A., Grady, Pamela, Guo, Shuai, Hariharan, Pushpa, Hindenach, Barbara, Hoadley, Katherine A., Jones, Corbin D., Ketchum, Karen A., Kinsinger, Christopher R., Kusnierz, Katarzyna, Mallery, David, Matteotti, Ronald, McGarvey, Peter B., Minoo, Parham, Paklina, Oxana V., Paulovich, Amanda G., Payne, Samuel H., Potapova, Olga, Qi, Liqun, Roche, Nancy, Rodland, Karin D., Rohrer, Daniel C., Shabunin, Alexey V., Shelton, Troy, Shutack, Yvonne, Singh, Shilpi, Smith, Michael, Smith, Richard D., Sokoll, Lori J., Suh, James, Thangudu, Ratna R., Valley, Dana R., Wang, Wenyi, Wilson, George D., Wiznerowicz, Maciej, Zhang, Zhen

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The dawn of the liquid biopsy in the fight against cancer by Domínguez-Vigil, Irma G, Moreno-Martínez, Ana K, Wang, Julia Y, Roehrl, Michael H A, Barrera-Saldaña, Hugo A

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Proteogenomic characterization of primary colorectal cancer and metastatic progression identifies proteome-based subtypes and signatures by Tanaka, Atsushi, Ogawa, Makiko, Zhou, Yihua, Namba, Kei, Hendrickson, Ronald C., Miele, Matthew M., Li, Zhuoning, Klimstra, David S., Buckley, Patrick G., Gulcher, Jeffrey, Wang, Julia Y., Roehrl, Michael H.A.

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Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center by Schüffler, Peter J, Geneslaw, Luke, Yarlagadda, D Vijay K, Hanna, Matthew G, Samboy, Jennifer, Stamelos, Evangelos, Vanderbilt, Chad, Philip, John, Jean, Marc-Henri, Corsale, Lorraine, Manzo, Allyne, Paramasivam, Neeraj H G, Ziegler, John S, Gao, Jianjiong, Perin, Juan C, Kim, Young Suk, Bhanot, Umeshkumar K, Roehrl, Michael H A, Ardon, Orly, Chiang, Sarah, Giri, Dilip D, Sigel, Carlie S, Tan, Lee K, Murray, Melissa, Virgo, Christina, England, Christine, Yagi, Yukako, Sirintrapun, S Joseph, Klimstra, David, Hameed, Meera, Reuter, Victor E, Fuchs, Thomas J

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A proteomic repertoire of autoantigens identified from the classic autoantibody clinical test substrate HEp-2 cells by Wang, Julia Y, Zhang, Wei, Rho, Jung-Hyun, Roehrl, Michael W, Roehrl, Michael H

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