The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)

by MacArthur, Jacqueline, Bowler, Emily, Cerezo, Maria, Gil, Laurent, Hall, Peggy, Hastings, Emma, Junkins, Heather, McMahon, Aoife, Milano, Annalisa, Morales, Joannella, Pendlington, Zoe May, Welter, Danielle, Burdett, Tony, Hindorff, Lucia, Flicek, Paul, Cunningham, Fiona, Parkinson, Helen
Published in Nucleic acids research

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

by Welter, Danielle, MacArthur, Jacqueline, Morales, Joannella, Burdett, Tony, Hall, Peggy, Junkins, Heather, Klemm, Alan, Flicek, Paul, Manolio, Teri, Hindorff, Lucia, Parkinson, Helen
Published in Nucleic acids research

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

by Buniello, Annalisa, MacArthur, Jacqueline A L, Cerezo, Maria, Harris, Laura W, Hayhurst, James, Malangone, Cinzia, McMahon, Aoife, Morales, Joannella, Mountjoy, Edward, Sollis, Elliot, Suveges, Daniel, Vrousgou, Olga, Whetzel, Patricia L, Amode, Ridwan, Guillen, Jose A, Riat, Harpreet S, Trevanion, Stephen J, Hall, Peggy, Junkins, Heather, Flicek, Paul, Burdett, Tony, Hindorff, Lucia A, Cunningham, Fiona, Parkinson, Helen
Published in Nucleic acids research

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments

by Petryszak, Robert, Burdett, Tony, Fiorelli, Benedetto, Fonseca, Nuno A, Gonzalez-Porta, Mar, Hastings, Emma, Huber, Wolfgang, Jupp, Simon, Keays, Maria, Kryvych, Nataliya, McMurry, Julie, Marioni, John C, Malone, James, Megy, Karine, Rustici, Gabriella, Tang, Amy Y, Taubert, Jan, Williams, Eleanor, Mannion, Oliver, Parkinson, Helen E, Brazma, Alvis
Published in Nucleic acids research

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants

by Petryszak, Robert, Keays, Maria, Tang, Y Amy, Fonseca, Nuno A, Barrera, Elisabet, Burdett, Tony, Füllgrabe, Anja, Fuentes, Alfonso Muñoz-Pomer, Jupp, Simon, Koskinen, Satu, Mannion, Oliver, Huerta, Laura, Megy, Karine, Snow, Catherine, Williams, Eleanor, Barzine, Mitra, Hastings, Emma, Weisser, Hendrik, Wright, James, Jaiswal, Pankaj, Huber, Wolfgang, Choudhary, Jyoti, Parkinson, Helen E, Brazma, Alvis
Published in Nucleic acids research

The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource

by Sollis, Elliot, Mosaku, Abayomi, Abid, Ala, Buniello, Annalisa, Cerezo, Maria, Gil, Laurent, Groza, Tudor, Güneş, Osman, Hall, Peggy, Hayhurst, James, Ibrahim, Arwa, Ji, Yue, John, Sajo, Lewis, Elizabeth, MacArthur, Jacqueline A L, McMahon, Aoife, Osumi-Sutherland, David, Panoutsopoulou, Kalliope, Pendlington, Zoë, Ramachandran, Santhi, Stefancsik, Ray, Stewart, Jonathan, Whetzel, Patricia, Wilson, Robert, Hindorff, Lucia, Cunningham, Fiona, Lambert, Samuel A, Inouye, Michael, Parkinson, Helen, Harris, Laura W
Published in Nucleic acids research

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

by Kibbe, Warren A, Arze, Cesar, Felix, Victor, Mitraka, Elvira, Bolton, Evan, Fu, Gang, Mungall, Christopher J, Binder, Janos X, Malone, James, Vasant, Drashtti, Parkinson, Helen, Schriml, Lynn M
Published in Nucleic acids research

A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

by Morales, Joannella, Welter, Danielle, Bowler, Emily H, Cerezo, Maria, Harris, Laura W, McMahon, Aoife C, Hall, Peggy, Junkins, Heather A, Milano, Annalisa, Hastings, Emma, Malangone, Cinzia, Buniello, Annalisa, Burdett, Tony, Flicek, Paul, Parkinson, Helen, Cunningham, Fiona, Hindorff, Lucia A, MacArthur, Jacqueline A L
Published in Genome Biology

The EBI RDF platform: linked open data for the life sciences

by Jupp, Simon, Malone, James, Bolleman, Jerven, Brandizi, Marco, Davies, Mark, Garcia, Leyla, Gaulton, Anna, Gehant, Sebastien, Laibe, Camille, Redaschi, Nicole, Wimalaratne, Sarala M, Martin, Maria, Le Novère, Nicolas, Parkinson, Helen, Birney, Ewan, Jenkinson, Andrew M
Published in Bioinformatics

Identification of Cancer Related Genes Using a Comprehensive Map of Human Gene Expression

by Torrente, Aurora, Lukk, Margus, Xue, Vincent, Parkinson, Helen, Rung, Johan, Brazma, Alvis
Published in PloS one

Large scale comparison of global gene expression patterns in human and mouse

by Zheng-Bradley, Xiangqun, Rung, Johan, Parkinson, Helen, Brazma, Alvis
Published in Genome biology

Gene expression atlas at the European bioinformatics institute

by Kapushesky, Misha, Emam, Ibrahim, Holloway, Ele, Kurnosov, Pavel, Zorin, Andrey, Malone, James, Rustici, Gabriella, Williams, Eleanor, Parkinson, Helen, Brazma, Alvis
Published in Nucleic acids research

Gramene 2016: comparative plant genomics and pathway resources

by Tello-Ruiz, Marcela K, Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M, Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A, Huerta, Laura, Keays, Maria, Tang, Y Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research

High-throughput discovery of novel developmental phenotypes

by Dickinson, Mary E, Flenniken, Ann M, Ji, Xiao, Teboul, Lydia, Wong, Michael D, White, Jacqueline K, Meehan, Terrence F, Weninger, Wolfgang J, Westerberg, Henrik, Adissu, Hibret, Baker, Candice N, Bower, Lynette, Brown, James M, Caddle, L Brianna, Chiani, Francesco, Clary, Dave, Cleak, James, Daly, Mark J, Denegre, James M, Doe, Brendan, Dolan, Mary E, Edie, Sarah M, Fuchs, Helmut, Gailus-Durner, Valerie, Galli, Antonella, Gambadoro, Alessia, Gallegos, Juan, Guo, Shiying, Horner, Neil R, Hsu, Chih-Wei, Johnson, Sara J, Kalaga, Sowmya, Keith, Lance C, Lanoue, Louise, Lawson, Thomas N, Lek, Monkol, Mark, Manuel, Marschall, Susan, Mason, Jeremy, McElwee, Melissa L, Newbigging, Susan, Nutter, Lauryl M J, Peterson, Kevin A, Ramirez-Solis, Ramiro, Rowland, Douglas J, Ryder, Edward, Samocha, Kaitlin E, Seavitt, John R, Selloum, Mohammed, Szoke-Kovacs, Zsombor, Tamura, Masaru, Trainor, Amanda G, Tudose, Ilinca, Wakana, Shigeharu, Warren, Jonathan, Wendling, Olivia, West, David B, Wong, Leeyean, Yoshiki, Atsushi, MacArthur, Daniel G, Tocchini-Valentini, Glauco P, Gao, Xiang, Flicek, Paul, Bradley, Allan, Skarnes, William C, Justice, Monica J, Parkinson, Helen E, Moore, Mark, Wells, Sara, Braun, Robert E, Svenson, Karen L, de Angelis, Martin Hrabe, Herault, Yann, Mohun, Tim, Mallon, Ann-Marie, Henkelman, R Mark, Brown, Steve D M, Adams, David J, Lloyd, K C Kent, McKerlie, Colin, Beaudet, Arthur L, Bućan, Maja, Murray, Stephen A
Published in Nature (London)

Recent advances in polygenic scores: translation, equitability, methods and FAIR tools

by Xiang, Ruidong, Kelemen, Martin, Xu, Yu, Harris, Laura W, Parkinson, Helen, Inouye, Michael, Lambert, Samuel A
Published in Genome medicine

Comparison, alignment, and synchronization of cell line information between CLO and EFO

by Ong, Edison, Sarntivijai, Sirarat, Jupp, Simon, Parkinson, Helen, He, Yongqun
Published in BMC bioinformatics

Ten Simple Rules for Selecting a Bio-ontology

by Malone, James, Stevens, Robert, Jupp, Simon, Hancocks, Tom, Parkinson, Helen, Brooksbank, Cath
Published in PLoS computational biology

OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic data

by Haselimashhadi, Hamed, Mason, Jeremy C, Mallon, Ann-Marie, Smedley, Damian, Meehan, Terrence F, Parkinson, Helen
Published in PloS one

The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation

by Muñoz-Fuentes, Violeta, Cacheiro, Pilar, Meehan, Terrence F., Aguilar-Pimentel, Juan Antonio, Brown, Steve D. M., Flenniken, Ann M., Flicek, Paul, Galli, Antonella, Mashhadi, Hamed Haseli, Hrabě de Angelis, Martin, Kim, Jong Kyoung, Lloyd, K. C. Kent, McKerlie, Colin, Morgan, Hugh, Murray, Stephen A., Nutter, Lauryl M. J., Reilly, Patrick T., Seavitt, John R., Seong, Je Kyung, Simon, Michelle, Wardle-Jones, Hannah, Mallon, Ann-Marie, Smedley, Damian, Parkinson, Helen E.
Published in Conservation genetics

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

by Rayner, Tim F, Rocca-Serra, Philippe, Spellman, Paul T, Causton, Helen C, Farne, Anna, Holloway, Ele, Irizarry, Rafael A, Liu, Junmin, Maier, Donald S, Miller, Michael, Petersen, Kjell, Quackenbush, John, Sherlock, Gavin, Stoeckert, Jr, Christian J, White, Joseph, Whetzel, Patricia L, Wymore, Farrell, Parkinson, Helen, Sarkans, Ugis, Ball, Catherine A, Brazma, Alvis
Published in BMC bioinformatics