Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study by Cuénod, Aline, Wüthrich, Daniel, Seth-Smith, Helena M B, Ott, Chantal, Gehringer, Christian, Foucault, Frédéric, Mouchet, Roxanne, Kassim, Ali, Revathi, Gunturu, Vogt, Deborah R, von Felten, Stefanie, Bassetti, Stefano, Tschudin-Sutter, Sarah, Hettich, Timm, Schlotterbeck, Götz, Homberger, Christina, Casanova, Carlo, Moran-Gilad, Jacob, Sagi, Orli, Rodríguez-Sánchez, Belén, Müller, Franco, Aerni, Martina, Gaia, Valeria, van Dessel, Helke, Kampinga, Greetje A, Müller, Claudia, Daubenberger, Claudia, Pflüger, Valentin, Egli, Adrian

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Unilateral Straight Hair—A Symptom of Acquired Horner's Syndrome in a Neonate by Ott, Chantal, Bobylev, Andrei, Holland-Cunz, Stefan Gerhard, Mayr, Johannes

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Unilateral Straight Hair-A Symptom of Acquired Horner's Syndrome in a Neonate by Ott, Chantal, Bobylev, Andrei, Holland-Cunz, Stefan Gerhard, Mayr, Johannes

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Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies by Kissler, Stephen M, Fauver, Joseph R, Mack, Christina, Olesen, Scott W, Tai, Caroline, Shiue, Kristin Y, Kalinich, Chaney C, Jednak, Sarah, Ott, Isabel M, Vogels, Chantal B F, Wohlgemuth, Jay, Weisberger, James, DiFiori, John, Anderson, Deverick J, Mancell, Jimmie, Ho, David D, Grubaugh, Nathan D, Grad, Yonatan H

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Detection of SARS-CoV-2 RNA by multiplex RT-qPCR by Kudo, Eriko, Israelow, Benjamin, Vogels, Chantal B F, Lu, Peiwen, Wyllie, Anne L, Tokuyama, Maria, Venkataraman, Arvind, Brackney, Doug E, Ott, Isabel M, Petrone, Mary E, Earnest, Rebecca, Lapidus, Sarah, Muenker, M Catherine, Moore, Adam J, Casanovas-Massana, Arnau, Omer, Saad B, Dela Cruz, Charles S, Farhadian, Shelli F, Ko, Albert I, Grubaugh, Nathan D, Iwasaki, Akiko

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Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States by Fauver, Joseph R., Petrone, Mary E., Hodcroft, Emma B., Shioda, Kayoko, Ehrlich, Hanna Y., Watts, Alexander G., Vogels, Chantal B.F., Brito, Anderson F., Alpert, Tara, Muyombwe, Anthony, Razeq, Jafar, Downing, Randy, Cheemarla, Nagarjuna R., Wyllie, Anne L., Kalinich, Chaney C., Ott, Isabel M., Quick, Joshua, Loman, Nicholas J., Neugebauer, Karla M., Greninger, Alexander L., Jerome, Keith R., Roychoudhury, Pavitra, Xie, Hong, Shrestha, Lasata, Huang, Meei-Li, Pitzer, Virginia E., Iwasaki, Akiko, Omer, Saad B., Khan, Kamran, Bogoch, Isaac I., Martinello, Richard A., Foxman, Ellen F., Landry, Marie L., Neher, Richard A., Ko, Albert I., Grubaugh, Nathan D.

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Sex differences in immune responses that underlie COVID-19 disease outcomes by Takahashi, Takehiro, Ellingson, Mallory K, Wong, Patrick, Israelow, Benjamin, Lucas, Carolina, Klein, Jon, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Liu, Feimei, Meir, Amit, Sun, Jonathan, Wang, Eric Y, Casanovas-Massana, Arnau, Wyllie, Anne L, Vogels, Chantal B F, Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M, Moore, Adam J, Shaw, Albert, Fournier, John B, Odio, Camila D, Farhadian, Shelli, Dela Cruz, Charles, Grubaugh, Nathan D, Schulz, Wade L, Ring, Aaron M, Ko, Albert I, Omer, Saad B, Iwasaki, Akiko

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Real-time public health communication of local SARS-CoV-2 genomic epidemiology by Kalinich, Chaney C, Jensen, Cole G, Neugebauer, Peter, Petrone, Mary E, Peña-Hernández, Mario, Ott, Isabel M, Wyllie, Anne L, Alpert, Tara, Vogels, Chantal B F, Fauver, Joseph R, Grubaugh, Nathan D, Brito, Anderson F

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Longitudinal analyses reveal immunological misfiring in severe COVID-19 by Lucas, Carolina, Wong, Patrick, Klein, Jon, Castro, Tiago B R, Silva, Julio, Sundaram, Maria, Ellingson, Mallory K, Mao, Tianyang, Oh, Ji Eun, Israelow, Benjamin, Takahashi, Takehiro, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Mohanty, Subhasis, Wang, Haowei, Wyllie, Anne L, Vogels, Chantal B F, Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M, Moore, Adam J, Muenker, M Catherine, Fournier, John B, Campbell, Melissa, Odio, Camila D, Casanovas-Massana, Arnau, Herbst, Roy, Shaw, Albert C, Medzhitov, Ruslan, Schulz, Wade L, Grubaugh, Nathan D, Dela Cruz, Charles, Farhadian, Shelli, Ko, Albert I, Omer, Saad B, Iwasaki, Akiko

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Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques by Baaijens, Jasmijn A, Zulli, Alessandro, Ott, Isabel M, Nika, Ioanna, van der Lugt, Mart J, Petrone, Mary E, Alpert, Tara, Fauver, Joseph R, Kalinich, Chaney C, Vogels, Chantal B F, Breban, Mallery I, Duvallet, Claire, McElroy, Kyle A, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L, Simen, Birgitte B, Hanage, William P, Grubaugh, Nathan D, Peccia, Jordan, Baym, Michael

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Diverse functional autoantibodies in patients with COVID-19 by Wang, Eric Y, Mao, Tianyang, Klein, Jon, Dai, Yile, Huck, John D, Jaycox, Jillian R, Liu, Feimei, Zhou, Ting, Israelow, Benjamin, Wong, Patrick, Coppi, Andreas, Lucas, Carolina, Silva, Julio, Oh, Ji Eun, Song, Eric, Perotti, Emily S, Zheng, Neil S, Fischer, Suzanne, Campbell, Melissa, Fournier, John B, Wyllie, Anne L, Vogels, Chantal B F, Ott, Isabel M, Kalinich, Chaney C, Petrone, Mary E, Watkins, Anne E, Dela Cruz, Charles, Farhadian, Shelli F, Schulz, Wade L, Ma, Shuangge, Grubaugh, Nathan D, Ko, Albert I, Iwasaki, Akiko, Ring, Aaron M

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Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity by Lucas, Carolina, Vogels, Chantal B F, Yildirim, Inci, Rothman, Jessica E, Lu, Peiwen, Monteiro, Valter, Gehlhausen, Jeff R, Campbell, Melissa, Silva, Julio, Tabachnikova, Alexandra, Peña-Hernandez, Mario A, Muenker, M Catherine, Breban, Mallery I, Fauver, Joseph R, Mohanty, Subhasis, Huang, Jiefang, Shaw, Albert C, Ko, Albert I, Omer, Saad B, Grubaugh, Nathan D, Iwasaki, Akiko

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Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2 by Wyllie, Anne L, Fournier, John, Casanovas-Massana, Arnau, Campbell, Melissa, Tokuyama, Maria, Vijayakumar, Pavithra, Warren, Joshua L, Geng, Bertie, Muenker, M Catherine, Moore, Adam J, Chantal B.F. Vogels, Petrone, Mary E, Ott, Isabel M, Lu, Peiwen, Venkataraman, Arvind, Lu-Culligan, Alice, Klein, Jonathan, Earnest, Rebecca, Simonov, Michael, Datta, Rupak, Handoko, Ryan, Nida Naushad, Sewanan, Lorenzo R, Valdez, Jordan, White, Elizabeth B, Lapidus, Sarah, Kalinich, Chaney C, Jiang, Xiaodong, Kim, Daniel J, Kudo, Eriko, Linehan, Melissa, Mao, Tianyang, Moriyama, Miyu, Oh, Ji E, Park, Annsea, Silva, Julio, Song, Eric, Takahashi, Takehiro, Taura, Manabu, Orr-El Weizman, Wong, Patrick, Yang, Yexin, Santos Bermejo, Odio, Camila D, Omer, Saad B, Dela Cruz, Charles S, Farhadian, Shelli, Martinello, Richard A, Iwasaki, Akiko, Grubaugh, Nathan D, Ko, Albert I

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Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva by Ott, Isabel M, Strine, Madison S, Watkins, Anne E, Boot, Maikel, Kalinich, Chaney C, Harden, Christina A, Vogels, Chantal B F, Casanovas-Massana, Arnau, Moore, Adam J, Muenker, M Catherine, Nakahata, Maura, Tokuyama, Maria, Nelson, Allison, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Dela Cruz, Charles S, Farhadian, Shelli F, Ko, Albert I, Iwasaki, Akiko, Grubaugh, Nathan D, Wilen, Craig B, Wyllie, Anne L

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A stem-loop RNA RIG-I agonist protects against acute and chronic SARS-CoV-2 infection in mice by Mao, Tianyang, Israelow, Benjamin, Lucas, Carolina, Vogels, Chantal B F, Gomez-Calvo, Maria Luisa, Fedorova, Olga, Breban, Mallery I, Menasche, Bridget L, Dong, Huiping, Linehan, Melissa, Wilen, Craig B, Landry, Marie L, Grubaugh, Nathan D, Pyle, Anna M, Iwasaki, Akiko

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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus by Vogels, Chantal B F, Hill, Verity, Breban, Mallery I, Chaguza, Chrispin, Paul, Lauren M, Sodeinde, Afeez, Taylor-Salmon, Emma, Ott, Isabel M, Petrone, Mary E, Dijk, Dennis, Jonges, Marcel, Welkers, Matthijs R A, Locksmith, Timothy, Dong, Yibo, Tarigopula, Namratha, Tekin, Omer, Schmedes, Sarah, Bunch, Sylvia, Cano, Natalia, Jaber, Rayah, Panzera, Charles, Stryker, Ian, Vergara, Julieta, Zimler, Rebecca, Kopp, Edgar, Heberlein, Lea, Herzog, Kaylee S, Fauver, Joseph R, Morrison, Andrea M, Michael, Scott F, Grubaugh, Nathan D

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The genetic architecture of the human cerebral cortex by Ching, Christopher R K, Zsembik, Leo C P, Alhusaini, Saud, Alnæs, Dag, Amlien, Inge K, Buimer, Elizabeth E L, Bülow, Robin, Bürger, Christian, Chen, Qiang, Cheung, Joshua W, de Araujo, Tânia K, de Zubicaray, Greig I, Doan, Nhat Trung, Dohm, Katharina, Fedko, Iryna O, Foley, Sonya F, Garrett, Melanie E, Ge, Tian, Groenewold, Nynke A, Harrison, Marc B, Heslenfeld, Dirk J, Holleran, Laurena, Janowitz, Deborah, Jockwitz, Christiane, Kasperaviciute, Dalia, Kaufmann, Tobias, Kikuchi, Masataka, Lee, Phil H, Mühleisen, Thomas W, Nakahara, Soichiro, Olde Loohuis, Loes M, Orfanos, Dimitri Papadopoulos, Richard, Geneviève, Salminen, Lauren, Saremi, Arvin, Shapland, Chin Yang, Shen, Li, Shin, Jean, Shumskaya, Elena, Sønderby, Ida E, Tansey, Katherine E, Thalamuthu, Anbupalam, Vallerga, Costanza Ludovica, van Erp, Theo G M, van Rooij, Daan, Wang, Mingyuan, Whelan, Christopher D, Wolf, Christiane, Brandt, Christine L, Cichon, Sven, Degenhardt, Franziska, Doherty, Colin P, Espiritu, Ryan, Heindel, Walter, Ho, Beng-Choon, Jang, MiHyun, Kolskår, Knut, Krug, Axel, Luykx, Jurjen J, Mathalon, Daniel H, Morris, Derek W, Nauck, Matthias, O'Leary, Daniel S, Opel, Nils, Pike, G Bruce, Quinlan, Erin B, Tooney, Paul A, White, Tonya, Adams, Hieab H H, Bis, Joshua C, Debette, Stephanie, Hofer, Edith, Mosley, Thomas H, Roshchupkin, Gennady V, Yang, Qiong, Ames, David, Andreassen, Ole A, Buitelaar, Jan K, Bustillo, Juan R, Cendes, Fernando, Dalrymple-Alford, John C, Hariri, Ahmad R, Hashimoto, Ryota, Heinz, Andreas, Henskens, Frans A, Hillegers, Manon H J, Hoekstra, Pieter J, Holmes, Avram J, Jönsson, Erik G, Kahn, René S, Kennedy, Martin A, Oosterlaan, Jaap, Pausova, Zdenka, Sim, Kang, Toga, Arthur W, Van der Wee, Nic J A, van 't Ent, Dennis, Völzke, Henry, Weber, Bernd, Medland, Sarah E

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Reply to: A finding of sex similarities rather than differences in COVID-19 outcomes by Takahashi, Takehiro, Ellingson, Mallory K, Wong, Patrick, Israelow, Benjamin, Lucas, Carolina, Klein, Jon, Silva, Julio, Mao, Tianyang, Oh, Ji Eun, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Park, Annsea, Liu, Feimei, Meir, Amit, Sun, Jonathan, Wang, Eric Y, Casanovas-Massana, Arnau, Wyllie, Anne L, Vogels, Chantal B F, Earnest, Rebecca, Lapidus, Sarah, Ott, Isabel M, Moore, Adam J, Shaw, Albert, Fournier, John B, Odio, Camila D, Farhadian, Shelli, Dela Cruz, Charles, Grubaugh, Nathan D, Schulz, Wade L, Ring, Aaron M, Ko, Albert I, Omer, Saad B, Iwasaki, Akiko

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Common genetic variants influence human subcortical brain structures by Stein, Jason L, Desrivières, Sylvane, Toro, Roberto, Armstrong, Nicola J, Bernard, Manon, Bralten, Janita, Brown, Andrew A, Ching, Christopher R K, den Braber, Anouk, Woldehawariat, Girma, Janowitz, Deborah, Jia, Tianye, Lee, Phil H, Macare, Christine, Ramasamy, Adaikalavan, Risacher, Shannon L, Schmaal, Lianne, Westlye, Lars T, Athanasiu, Lavinia, Hakobjan, Marina M H, Haukvik, Unn K, Heister, Angelien J G A M, Hoehn, David, Lopez, Lorna M, Royle, Natalie A, van Hulzen, Kimm J E, Walton, Esther, Ames, David, Assareh, Amelia A, Bastin, Mark E, Corvin, Aiden, de Zubicaray, Greig I, Duggirala, Ravi, Dyer, Thomas D, Erk, Susanne, Fedko, Iryna O, Guelfi, Sebastian, Hansell, Narelle K, Hegenscheid, Katrin, Heinz, Andreas, Hoekstra, Pieter J, Jenkinson, Mark, Kent, Jr, Jack W, Longo, Dan L, Meisenzahl, Eva, Melle, Ingrid, Mohnke, Sebastian, Mostert, Jeanette C, Nalls, Michael A, Nilsson, Lars G, Reppermund, Simone, Rujescu, Dan, Schnell, Knut, Steen, Vidar M, Thalamuthu, Anbupalam, Toga, Arthur W, Troncoso, Juan, van 't Ent, Dennis, van der Brug, Marcel, Veltman, Dick J, Wassink, Thomas H, Westman, Eric, Zielke, Ronald H, Ashbrook, David G, Morris, Derek W, Buckner, Randy L, Dale, Anders M, Delanty, Norman, Kahn, René S, Meyer-Lindenberg, Andreas, Müller-Myhsok, Bertram, Nyberg, Lars, Sisodiya, Sanjay M, van Bokhoven, Hans, Völzke, Henry, Weiner, Michael W, Agartz, Ingrid, Andreassen, Ole A, Blangero, John, Cannon, Dara M, Deary, Ian J, Fisher, Simon E, Glahn, David C, Grabe, Hans J, Hulshoff Pol, Hilleke E, Lovestone, Simon, Mecocci, Patrizia, McIntosh, Andrew M, Ophoff, Roel A, Ryten, Mina, Wardlaw, Joanna M, Schmidt, Reinhold, Yanek, Lisa, Greve, Douglas, Nyquist, Paul, Vinke, Louis N, Mazoyer, Bernard, Wright, Margaret J, Schumann, Gunter, Thompson, Paul M

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Multiscale PHATE identifies multimodal signatures of COVID-19 by Kuchroo, Manik, Huang, Jessie, Wong, Patrick, Grenier, Jean-Christophe, Shung, Dennis, Tong, Alexander, Lucas, Carolina, Klein, Jon, Burkhardt, Daniel B, Gigante, Scott, Godavarthi, Abhinav, Rieck, Bastian, Israelow, Benjamin, Simonov, Michael, Mao, Tianyang, Oh, Ji Eun, Silva, Julio, Takahashi, Takehiro, Odio, Camila D, Casanovas-Massana, Arnau, Fournier, John, Farhadian, Shelli, Dela Cruz, Charles S, Ko, Albert I, Hirn, Matthew J, Wilson, F Perry, Hussin, Julie G, Wolf, Guy, Iwasaki, Akiko, Krishnaswamy, Smita

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