Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters

by Rice, Marlen C, Norton, Jeanette M, Stein, Lisa Y, Kozlowski, Jessica, Bollmann, Annette, Klotz, Martin G, Sayavedra-Soto, Luis, Shapiro, Nicole, Goodwin, Lynne A, Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Varghese, Neha, Mikhailova, Natalia, Palaniappan, Krishna, Ivanova, Natalia, Mukherjee, Supratim, Reddy, T B K, Yee Ngan, Chew, Daum, Chris, Kyrpides, Nikos, Woyke, Tanja
Published in Genome announcements (Washington, DC)

Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

by Gutierrez, Tony, Whitman, William B, Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T B K, Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N, Woyke, Tanja
Published in Genome announcements (Washington, DC)

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

by Gostinčar, Cene, Ohm, Robin A, Kogej, Tina, Sonjak, Silva, Turk, Martina, Zajc, Janja, Zalar, Polona, Grube, Martin, Sun, Hui, Han, James, Sharma, Aditi, Chiniquy, Jennifer, Ngan, Chew Yee, Lipzen, Anna, Barry, Kerrie, Grigoriev, Igor V, Gunde-Cimerman, Nina
Published in BMC genomics

Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum

by Gutierrez, Tony, Whitman, William B, Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T B K, Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N, Woyke, Tanja
Published in Genome announcements (Washington, DC)

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7

by Utturkar, Sagar M, Bayer, Edward A, Borovok, Ilya, Lamed, Raphael, Hurt, Richard A, Land, Miriam L, Klingeman, Dawn M, Elias, Dwayne, Zhou, Jizhong, Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T B K, Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Brown, Steven D
Published in Genome announcements (Washington, DC)

Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

by Woo, Hannah L, O'Dell, Kaela B, Utturkar, Sagar, McBride, Kathryn R, Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T B K, Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Brown, Steven D, Hazen, Terry C
Published in Genome announcements (Washington, DC)

Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription

by Zhu, Yanfen, Gujar, Amit D., Wong, Chee-Hong, Tjong, Harianto, Ngan, Chew Yee, Gong, Liang, Chen, Yi-An, Kim, Hoon, Liu, Jihe, Li, Meihong, Mil-Homens, Adam, Maurya, Rahul, Kuhlberg, Chris, Sun, Fanyue, Yi, Eunhee, deCarvalho, Ana C., Ruan, Yijun, Verhaak, Roel G.W., Wei, Chia-Lin
Published in Cancer cell

High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada

by Ganji, Rakesh, Murugapiran, Senthil K, Ong, John C, Manoharan, Namritha, Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T B K, Ngan, Chew Yee, Daum, Chris, Duffy, Kecia, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Dodsworth, Jeremy A, Hedlund, Brian P
Published in Genome announcements (Washington, DC)

High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China

by Mefferd, Chrisabelle C, Zhou, En-Min, Yu, Tian-Tian, Ming, Hong, Murugapiran, Senthil K, Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T B K, Ngan, Chew Yee, Daum, Chris, Duffy, Kecia, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Williams, Amanda J, Woyke, Tanja, Li, Wen-Jun, Hedlund, Brian P
Published in Genome announcements (Washington, DC)

Hepatic expression of ANG2 RNA in metastatic colorectal cancer

by Ogawa, Minoru, Yamamoto, Hirofumi, Nagano, Hiroaki, Miyake, Yasuhiro, Sugita, Yurika, Hata, Taishi, Kim, Byung‐no, Ngan, Chew Yee, Damdinsuren, Bazarragchaa, Ikenaga, Masakazu, Ikeda, Masataka, Ohue, Masayuki, Nakamori, Shoji, Sekimoto, Mitsugu, Sakon, Masato, Matsuura, Nariaki, Monden, Morito
Published in Hepatology (Baltimore, Md.)

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

by Bowers, Robert M, Clum, Alicia, Tice, Hope, Lim, Joanne, Singh, Kanwar, Ciobanu, Doina, Ngan, Chew Yee, Cheng, Jan-Fang, Tringe, Susannah G, Woyke, Tanja
Published in BMC genomics

Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species

by Kjærbølling, Inge, Vesth, Tammi C., Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kuo, Alan, Bowyer, Paul, Matsuda, Yudai, Mondo, Stephen, Lyhne, Ellen K., Kogle, Martin E., Clum, Alicia, Lipzen, Anna, Salamov, Asaf, Ngan, Chew Yee, Daum, Chris, Chiniquy, Jennifer, Barry, Kerrie, LaButti, Kurt, Haridas, Sajeet, Simmons, Blake A., Magnuson, Jon K., Mortensen, Uffe H., Larsen, Thomas O., Grigoriev, Igor V., Baker, Scott E., Andersen, Mikael R.
Published in Proceedings of the National Academy of Sciences - PNAS

Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells

by Zhang, Xiao-Li, Wu, Jun, Wang, Jian, Shen, Tingting, Li, Hua, Lu, Jun, Gu, Yunzhao, Kang, Yani, Wong, Chee-Hong, Ngan, Chew Yee, Shao, Zhifeng, Wu, Ji, Zhao, Xiaodong
Published in Genome Biology

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

by van Munster, Jolanda M, Daly, Paul, Blythe, Martin J, Ibbett, Roger, Kokolski, Matt, Gaddipati, Sanyasi, Lindquist, Erika, Singan, Vasanth R, Barry, Kerrie W, Lipzen, Anna, Ngan, Chew Yee, Petzold, Christopher J, Chan, Leanne Jade G, Arvas, Mikko, Raulo, Roxane, Pullan, Steven T, Delmas, Stéphane, Grigoriev, Igor V, Tucker, Gregory A, Simmons, Blake A, Archer, David B
Published in Biotechnology for biofuels

Abstract 2084: Single-cell multimodal glioma analyses reveal epigenetic regulators of cellular plasticity and environmental stress response

by Johnson, Kevin C., Anderson, Kevin J., Courtois, Elise T., Gujar, Amit D., Barthel, Floris P., Varn, Frederick S., Luo, Diane, Seignon, Martine, Yi, Eunhee, Kim, Hoon, Estecio, Marcos R., Tang, Ming, Navin, Nicholas E., Maurya, Rahul, Ngan, Chew Yee, Verburg, Niels, Hamer, Philip C. De Witt, Bulsara, Ketan, Samuels, Michael L., Das, Sunit, Robson, Paul, Verhaak, Roel G.
Published in Cancer research (Chicago, Ill.)

Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

by Evans, Joseph, Crisovan, Emily, Barry, Kerrie, Daum, Chris, Jenkins, Jerry, Kunde‐Ramamoorthy, Govindarajan, Nandety, Aruna, Ngan, Chew Yee, Vaillancourt, Brieanne, Wei, Chia‐Lin, Schmutz, Jeremy, Kaeppler, Shawn M., Casler, Michael D., Buell, Carol Robin
Published in The Plant journal : for cell and molecular biology

Multiplex chromatin interactions with singlemolecule precision

by Zheng, Meizhen, Tian, Simon Zhongyuan, Capurso, Daniel, Kim, Minji, Maurya, Rahul, Lee, Byoungkoo, Piecuch, Emaly, Gong, Liang, Zhu, Jacqueline Jufen, Li, Zhihui, Wong, Chee Hong, Ngan, Chew Yee, Wang, Ping, Ruan, Xiaoan, Wei, Chia-Lin, Ruan, Yijun
Published in Nature (London)

An allelic series of spontaneous Rorb mutant mice exhibit a gait phenotype, changes in retina morphology and behavior, and gene expression signatures associated with the unfolded p...

by Murray, George C, Bubier, Jason A, Zinder, Oraya J, Harris, Belinda, Clark, James, Christopher, Mia-Cara, Hanley, Courtany, Tjong, Harianto, Li, Meihong, Ngan, Chew Yee, Reinholdt, Laura, Burgess, Robert W, Tadenev, Abigail L D
Published in G3 : genes - genomes - genetics

Role of p21waf1/cip1 in effects of oxaliplatin in colorectal cancer cells

by Hata, Taishi, Yamamoto, Hirofumi, Ngan, Chew Yee, Koi, Minoru, Takagi, Akimitsu, Damdinsuren, Bazarragchaa, Yasui, Masayoshi, Fujie, Yujiro, Matsuzaki, Takeshi, Hemmi, Hiromichi, Xu, Xundi, Kitani, Kotaro, Seki, Yosuke, Takemasa, Ichiro, Ikeda, Masataka, Sekimoto, Mitsugu, Matsuura, Nariaki, Monden, Morito
Published in Molecular cancer therapeutics

GENE-57. COMPARATIVE MOLECULAR LIFE HISTORY OF SPONTANEOUS CANINE AND HUMAN GLIOMA

by Amin, Samirkumar, Anderson, Kevin, Bourdreau, Beth, Martínez, Emmanuel, Kocakavuk, Emre, Johnson, Kevin C, Barthel, Floris, Varn, Frederick, Kassab, Cynthia, Ling, Xiaoyang, Kim, Hoon, Barther, Mary, Yee Ngan, Chew, Dickinson, Peter, Packer, Rebecca, Taylor, Amanda, Rossmeisl, John, Heimberger, Amy, Levine, Jonathan, Verhaak, Roel
Published in Neuro-oncology (Charlottesville, Va.)