Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS by Krug, Lisa, Chatterjee, Nabanita, Borges-Monroy, Rebeca, Hearn, Stephen, Liao, Wen-Wei, Morrill, Kathleen, Prazak, Lisa, Rozhkov, Nikolay, Theodorou, Delphine, Hammell, Molly, Dubnau, Josh

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The genomic landscape of canine osteosarcoma cell lines reveals conserved structural complexity and pathway alterations by Megquier, Kate, Turner-Maier, Jason, Morrill, Kathleen, Li, Xue, Johnson, Jeremy, Karlsson, Elinor K, London, Cheryl A, Gardner, Heather L

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Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements by Wirthlin, Morgan E, Schmid, Tobias A, Elie, Julie E, Kowalczyk, Amanda, Redlich, Ruby, Rakuljic, Ashley, Ji, Maria B, Bhat, Ninad S, Kaplow, Irene M, Schäffer, Daniel E, Lawler, Alyssa J, Wang, Andrew Z, Phan, BaDoi N, Annaldasula, Siddharth, Brown, Ashley R, Lu, Tianyu, Azim, Eiman, Meyer, Wynn K, Pond, Sergei L Kosakovsky, Chikina, Maria, Yartsev, Michael M, Pfenning, Andreas R, Andrews, Gregory, Bianchi, Matteo, Bredemeyer, Kevin R, Breit, Ana M, Christmas, Matthew J, Clawson, Hiram, Di Palma, Federica, Dong, Michael X, Fan, Kaili, Fanter, Cornelia, Foley, Nicole M, Forsberg-Nilsson, Karin, Gatesy, John, Gazal, Steven, Genereux, Diane P, Goodman, Linda, Grimshaw, Jenna, Halsey, Michaela K, Hickey, Glenn, Hiller, Michael, Hindle, Allyson G, Hubley, Robert M, Hughes, Graham M, Johnson, Jeremy, Kaplow, Irene M, Keough, Kathleen C, Koepfli, Klaus-Peter, Korstian, Jennifer M, Kowalczyk, Amanda, Lawler, Alyssa J, Lawless, Colleen, Levesque, Danielle L, Lewin, Harris A, Li, Xue, Lind, Abigail, Lindblad-Toh, Kerstin, Mackay-Smith, Ava, Marinescu, Voichita D, Meyer, Wynn K, Moreno-Santillan, Diana D, Morrill, Kathleen M, Muntané, Gerard, Murphy, William J, Navarro, Arcadi, Nweeia, Martin, Ortmann, Sylvia, Osmanski, Austin, Paten, Benedict, Pfenning, Andreas R, Phan, BaDoi N, Pollard, Katherine S, Pratt, Henry E, Ray, David A, Reilly, Steven K, Rosen, Jeb R, Ruf, Irina, Ryan, Louise, Sabeti, Pardis C, Shapiro, Beth, Smit, Arian F A, Springer, Mark, Srinivasan, Chaitanya, Steiner, Cynthia, Sullivan, Patrick F, Sundström, Elisabeth, Supple, Megan A, Swofford, Ross, Teeling, Emma, Turner-Maier, Jason, Valenzuela, Alejandro, Wagner, Franziska, Wallerman, Ola, Wang, Chao, Wang, Juehan, Weng, Zhiping, Wilder, Aryn P, Wirthlin, Morgan E, Xue, James R

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BarkBase: Epigenomic Annotation of Canine Genomes by Megquier, Kate, Genereux, Diane P, Hekman, Jessica, Swofford, Ross, Turner-Maier, Jason, Johnson, Jeremy, Alonso, Jacob, Li, Xue, Morrill, Kathleen, Anguish, Lynne J, Koltookian, Michele, Logan, Brittney, Sharp, Claire R, Ferrer, Lluis, Lindblad-Toh, Kerstin, Meyers-Wallen, Vicki N, Hoffman, Andrew, Karlsson, Elinor K

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Comparative neurogenetics of dog behavior complements efforts towards human neuropsychiatric genetics by Morrill, Kathleen, Chen, Frances, Karlsson, Elinor

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An open science study of ageing in companion dogs by Creevy, Kate E, Akey, Joshua M, Kaeberlein, Matt, Promislow, Daniel E L

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Ancestry-inclusive dog genomics challenges popular breed stereotypes by Morrill, Kathleen, Hekman, Jessica, Li, Xue, McClure, Jesse, Logan, Brittney, Goodman, Linda, Gao, Mingshi, Dong, Yinan, Alonso, Marjie, Carmichael, Elena, Snyder-Mackler, Noah, Alonso, Jacob, Noh, Hyun Ji, Johnson, Jeremy, Koltookian, Michele, Lieu, Charlie, Megquier, Kate, Swofford, Ross, Turner-Maier, Jason, White, Michelle E, Weng, Zhiping, Colubri, Andrés, Genereux, Diane P, Lord, Kathryn A, Karlsson, Elinor K

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CROSS-SPECIES GENETIC AND EVOLUTIONARY ANALYSIS HIGHLIGHT THE RELEVANCE OF CANINE COMPULSIVE BEHAVIORS FOR HUMAN OBSESSIVE-COMPULSIVE DISORDER by Morrill, Kathleen, Karlsson, Elinor, Lindblad-Toh, Kerstin, Crowley, James, Mataix-Cols, David, Mattheisen, Manuel, Rück, Christian

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Evolutionary constraint and innovation across hundreds of placental mammals by Christmas, Matthew J, Kaplow, Irene M, Genereux, Diane P, Dong, Michael X, Hughes, Graham M, Li, Xue, Sullivan, Patrick F, Hindle, Allyson G, Andrews, Gregory, Armstrong, Joel C, Bianchi, Matteo, Breit, Ana M, Diekhans, Mark, Fanter, Cornelia, Foley, Nicole M, Goodman, Daniel B, Goodman, Linda, Keough, Kathleen C, Kirilenko, Bogdan, Kowalczyk, Amanda, Lawless, Colleen, Lind, Abigail L, Meadows, Jennifer R S, Moreira, Lucas R, Redlich, Ruby W, Ryan, Louise, Swofford, Ross, Valenzuela, Alejandro, Wagner, Franziska, Wallerman, Ola, Brown, Ashley R, Damas, Joana, Fan, Kaili, Gatesy, John, Grimshaw, Jenna, Johnson, Jeremy, Kozyrev, Sergey V, Lawler, Alyssa J, Marinescu, Voichita D, Morrill, Kathleen M, Osmanski, Austin, Paulat, Nicole S, Phan, BaDoi N, Reilly, Steven K, Schäffer, Daniel E, Steiner, Cynthia, Supple, Megan A, Wilder, Aryn P, Wirthlin, Morgan E, Xue, James R, Birren, Bruce W, Gazal, Steven, Hubley, Robert M, Koepfli, Klaus-Peter, Marques-Bonet, Tomas, Meyer, Wynn K, Nweeia, Martin, Sabeti, Pardis C, Shapiro, Beth, Smit, Arian F A, Springer, Mark S, Teeling, Emma C, Weng, Zhiping, Hiller, Michael, Levesque, Danielle L, Lewin, Harris A, Murphy, William J, Navarro, Arcadi, Paten, Benedict, Pollard, Katherine S, Ray, David A, Ruf, Irina, Ryder, Oliver A, Pfenning, Andreas R, Lindblad-Toh, Kerstin, Karlsson, Elinor K

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Integrating gene annotation with orthology inference at scale by Kirilenko, Bogdan M, Munegowda, Chetan, Osipova, Ekaterina, Jebb, David, Sharma, Virag, Blumer, Moritz, Morales, Ariadna E, Ahmed, Alexis-Walid, Kontopoulos, Dimitrios-Georgios, Hilgers, Leon, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Hiller, Michael

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A genomic timescale for placental mammal evolution by Foley, Nicole M, Mason, Victor C, Harris, Andrew J, Bredemeyer, Kevin R, Damas, Joana, Lewin, Harris A, Eizirik, Eduardo, Gatesy, John, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Springer, Mark S, Murphy, William J

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Evolution of the ancestral mammalian karyotype and syntenic regions by Damas, Joana, Corbo, Marco, Kim, Jaebum, Turner-Maier, Jason, Farré, Marta, Larkin, Denis M, Ryder, Oliver A, Steiner, Cynthia, Houck, Marlys L, Hall, Shaune, Shiue, Lily, Thomas, Stephen, Swale, Thomas, Daly, Mark, Korlach, Jonas, Uliano-Silva, Marcela, Mazzoni, Camila J, Birren, Bruce W, Genereux, Diane P, Johnson, Jeremy, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Nweeia, Martin T, Johnson, Rebecca N, Lewin, Harris A

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The contribution of historical processes to contemporary extinction risk in placental mammals by Wilder, Aryn P, Supple, Megan A, Subramanian, Ayshwarya, Mudide, Anish, Swofford, Ross, Serres-Armero, Aitor, Steiner, Cynthia, Koepfli, Klaus-Peter, Genereux, Diane P, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Marques-Bonet, Tomas, Munoz Fuentes, Violeta, Foley, Kathleen, Meyer, Wynn K, Ryder, Oliver A, Shapiro, Beth

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Relating enhancer genetic variation across mammals to complex phenotypes using machine learning by Kaplow, Irene M, Lawler, Alyssa J, Schäffer, Daniel E, Srinivasan, Chaitanya, Sestili, Heather H, Wirthlin, Morgan E, Phan, BaDoi N, Prasad, Kavya, Brown, Ashley R, Zhang, Xiaomeng, Foley, Kathleen, Genereux, Diane P, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Meyer, Wynn K, Pfenning, Andreas R

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Leveraging base-pair mammalian constraint to understand genetic variation and human disease by Sullivan, Patrick F, Meadows, Jennifer R S, Gazal, Steven, Phan, BaDoi N, Li, Xue, Genereux, Diane P, Dong, Michael X, Bianchi, Matteo, Andrews, Gregory, Sakthikumar, Sharadha, Nordin, Jessika, Roy, Ananya, Christmas, Matthew J, Marinescu, Voichita D, Wang, Chao, Wallerman, Ola, Xue, James, Yao, Shuyang, Sun, Quan, Szatkiewicz, Jin, Wen, Jia, Huckins, Laura M, Lawler, Alyssa, Keough, Kathleen C, Zheng, Zhili, Zeng, Jian, Wray, Naomi R, Li, Yun, Johnson, Jessica, Chen, Jiawen, Paten, Benedict, Reilly, Steven K, Hughes, Graham M, Weng, Zhiping, Pollard, Katherine S, Pfenning, Andreas R, Forsberg-Nilsson, Karin, Karlsson, Elinor K, Lindblad-Toh, Kerstin

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Mammalian evolution of human cis-regulatory elements and transcription factor binding sites by Andrews, Gregory, Fan, Kaili, Pratt, Henry E, Phalke, Nishigandha, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Gazal, Steven, Moore, Jill E, Weng, Zhiping

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Elements in the λ immunity region regulate phage development: beyond the ‘Genetic Switch’ by Thomason, Lynn C., Morrill, Kathleen, Murray, Gillian, Court, Carolyn, Shafer, Brenda, Schneider, Thomas D., Court, Donald L.

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Insights into mammalian TE diversity through the curation of 248 genome assemblies by Osmanski, Austin B, Paulat, Nicole S, Korstian, Jenny, Grimshaw, Jenna R, Halsey, Michaela, Sullivan, Kevin A M, Moreno-Santillán, Diana D, Crookshanks, Claudia, Roberts, Jacquelyn, Garcia, Carlos, Johnson, Matthew G, Densmore, Llewellyn D, Stevens, Richard D, Rosen, Jeb, Storer, Jessica M, Hubley, Robert, Smit, Arian F A, Dávalos, Liliana M, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Ray, David A

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Three-dimensional genome rewiring in loci with human accelerated regions by Keough, Kathleen C, Whalen, Sean, Inoue, Fumitaka, Przytycki, Pawel F, Fair, Tyler, Deng, Chengyu, Steyert, Marilyn, Ryu, Hane, Lindblad-Toh, Kerstin, Karlsson, Elinor, Nowakowski, Tomasz, Ahituv, Nadav, Pollen, Alex, Pollard, Katherine S

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The functional and evolutionary impacts of human-specific deletions in conserved elements by Xue, James R, Mackay-Smith, Ava, Mouri, Kousuke, Garcia, Meilin Fernandez, Dong, Michael X, Akers, Jared F, Noble, Mark, Li, Xue, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Noonan, James P, Capellini, Terence D, Brennand, Kristen J, Tewhey, Ryan, Sabeti, Pardis C, Reilly, Steven K

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