Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

by Davis, Matthew P, Midford, Peter E, Maddison, Wayne
Published in BMC evolutionary biology

Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics

by Karp, Peter D, Midford, Peter E, Caspi, Ron, Khodursky, Arkady
Published in BMC genomics

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

by Stoltzfus, Arlin, Lapp, Hilmar, Matasci, Naim, Deus, Helena, Sidlauskas, Brian, Zmasek, Christian M, Vaidya, Gaurav, Pontelli, Enrico, Cranston, Karen, Vos, Rutger, Webb, Campbell O, Harmon, Luke J, Pirrung, Megan, O'Meara, Brian, Pennell, Matthew W, Mirarab, Siavash, Rosenberg, Michael S, Balhoff, James P, Bik, Holly M, Heath, Tracy A, Midford, Peter E, Brown, Joseph W, McTavish, Emily Jane, Sukumaran, Jeet, Westneat, Mark, Alfaro, Michael E, Steele, Aaron, Jordan, Greg
Published in BMC bioinformatics

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

by Midford, Peter E, Dececchi, Thomas Alex, Balhoff, James P, Dahdul, Wasila M, Ibrahim, Nizar, Lapp, Hilmar, Lundberg, John G, Mabee, Paula M, Sereno, Paul C, Westerfield, Monte, Vision, Todd J, Blackburn, David C
Published in Journal of biomedical semantics