Associations and recovery dynamics of the nasopharyngeal microbiota during influenza-like illness in the aging population

by Shetty, Sudarshan A, van Beek, Josine, Bijvank, Elske, Groot, James, Kuiling, Sjoerd, Bosch, Thijs, van Baarle, Debbie, Fuentes, Susana
Published in Scientific reports

Benchmarking laboratory processes to characterise low-biomass respiratory microbiota

by Hasrat, Raiza, Kool, Jolanda, de Steenhuijsen Piters, Wouter A A, Chu, Mei Ling J N, Kuiling, Sjoerd, Groot, James A, van Logchem, Elske M, Fuentes, Susana, Franz, Eelco, Bogaert, Debby, Bosch, Thijs
Published in Scientific reports

Optimization of Notification Criteria for Shiga Toxin-Producing Escherichia coli Surveillance, the Netherlands

by Friesema, Ingrid H M, Kuiling, Sjoerd, Igloi, Zsofia, Franz, Eelco
Published in Emerging infectious diseases

New insights into the epidemiology of Listeria monocytogenes - A cross-sectoral retrospective genomic analysis in the Netherlands (2010-2020)

by Coipan, Claudia E, Friesema, Ingrid H M, van Hoek, Angela H A M, van den Bosch, Tijs, van den Beld, Maaike, Kuiling, Sjoerd, Gras, Lapo Mughini, Bergval, Indra, Bosch, Thijs, Wullings, Bart, van der Voort, Menno, Franz, Eelco
Published in Frontiers in microbiology

A Multifactorial Approach for Surveillance of Shigella spp. and Entero-Invasive Escherichia coli Is Important for Detecting (Inter)national Clusters

by van den Beld, Maaike J. C., Reubsaet, Frans A. G., Pijnacker, Roan, Harpal, Airien, Kuiling, Sjoerd, Heerkens, Evy M., Hoeve-Bakker, B. J. A. (Dieneke), Noomen, Ramón C. E. A., Hendriks, Amber C. A., Borst, Dyogo, van der Heide, Han, Kooistra-Smid, A. M. D. (Mirjam), Rossen, John W. A.
Published in Frontiers in microbiology

Optimization of Notification Criteria for Shiga Toxin--Producing Escherichia coli Surveillance, the Netherlands

by Friesema, Ingrid H.M, Kuiling, Sjoerd, Igloi, Zsofia, Franz, Eelco
Published in Emerging infectious diseases

An international outbreak of Salmonella enterica serotype Enteritidis linked to eggs from Poland: a microbiological and epidemiological study

by Pijnacker, Roan, Dallman, Timothy J, Tijsma, Aloys S L, Hawkins, Gillian, Larkin, Lesley, Kotila, Saara M, Amore, Giusi, Amato, Ettore, Suzuki, Pamina M, Denayer, Sarah, Klamer, Sofieke, Pászti, Judit, McCormick, Jacquelyn, Hartman, Hassan, Hughes, Gareth J, Brandal, Lin C T, Brown, Derek, Mossong, Joël, Jernberg, Cecilia, Müller, Luise, Palm, Daniel, Severi, Ettore, Gołębiowska, Joannna, Hunjak, Blaženka, Owczarek, Slawomir, Le Hello, Simon, Garvey, Patricia, Mooijman, Kirsten, Friesema, Ingrid H M, van der Weijden, Coen, van der Voort, Menno, Rizzi, Valentina, Franz, Eelco, Bertrand, Sophie, Brennan, Martine, Browning, Lynda, Bruce, Ryan, Cantaert, Vera, Chattaway, Marie, Coia, John, Couper, Sarah, Žohar Čretnik, Tjaša, Daniel, Ondřej, Dionisi, Anna Maria, Fabre, Laetitia, Fitz-James, Ife, Florek, Karolina, Florianová, Martina, Fox, Eithne, Frelih, Tatjana, Grilc, Eva, Katalinic Jankovic, Vera, Jourdan, Nathalie, Karpíšková, Renata, van den Kerkhof, Hans, Kuiling, Sjoerd, Kurečić Filipović, Sanja, Laisnez, Valeska, Lange, Heidi, deLappes, Niall, Leblanc, Judith, Luzzi, Ida, Mandilara, Georgia, Mather, Henry, Mattheus, Wesley, Mellou, Kassiani, Morgan, Deborah, Pászti, Judit, de Pinna, Elizabeth, Ragimbeau, Catherine, Røed, Margrethe Hovda, Salmenlinna, Saara, Smith, Robert, Smith-Palmer, Alison, Špačková, Michaela, Torpdahl, Mia, Trkov, Marija, Trönnberg, Linda, Tzani, Myrsini, Utsi, Lara, Wasyl, Dariusz, Weicherding, Pierre
Published in The Lancet infectious diseases

Sources and transmission routes of campylobacteriosis: A combined analysis of genome and exposure data

by Mughini-Gras, Lapo, Pijnacker, Roan, Coipan, Claudia, Mulder, Annemieke C., Fernandes Veludo, Adriana, de Rijk, Sharona, van Hoek, Angela H.A.M., Buij, Ralph, Muskens, Gerard, Koene, Miriam, Veldman, Kees, Duim, Birgitta, van der Graaf-van Bloois, Linda, van der Weijden, Coen, Kuiling, Sjoerd, Verbruggen, Anjo, van der Giessen, Joke, Opsteegh, Marieke, van der Voort, Menno, Castelijn, Greetje A.A., Schets, Franciska M., Blaak, Hetty, Wagenaar, Jaap A., Zomer, Aldert L., Franz, Eelco
Published in The Journal of infection

Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli

by van den Beld, Maaike J C, de Boer, Richard F, Reubsaet, Frans A G, Rossen, John W A, Zhou, Kai, Kuiling, Sjoerd, Friedrich, Alexander W, Kooistra-Smid, Mirjam A M D
Published in Journal of clinical microbiology

National point prevalence study on carriage of multidrug-resistant microorganisms in Dutch long-term care facilities in 2018

by van Kleef, Esther, Wielders, Cornelia C H, Schouls, Leo M, Feenstra, Sabiena G, Hertogh, Cees M P M, Bonten, Marc J M, van Weert, Yolanda, Tostmann, Alma, van der Lubben, Mariken, de Greeff, Sabine C
Published in Journal of antimicrobial chemotherapy

Molecular typing of Salmonella strains isolated from food, feed and animals: state of play and standard operating procedures for pulsed field gel electrophoresis (PFGE) and Multipl...

by Jacobs, Wilma, Kuiling, Sjoerd, Zwaluw, Kim
Published in EFSA supporting publications