Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics

by Khaledi, Ariane, Weimann, Aaron, Schniederjans, Monika, Asgari, Ehsaneddin, Kuo, Tzu‐Hao, Oliver, Antonio, Cabot, Gabriel, Kola, Axel, Gastmeier, Petra, Hogardt, Michael, Jonas, Daniel, Mofrad, Mohammad RK, Bremges, Andreas, McHardy, Alice C, Häussler, Susanne
Published in EMBO molecular medicine

The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation

by Dötsch, Andreas, Schniederjans, Monika, Khaledi, Ariane, Hornischer, Klaus, Schulz, Sebastian, Bielecka, Agata, Eckweiler, Denitsa, Pohl, Sarah, Häussler, Susanne
Published in mBio

Critical Assessment of Metagenome Interpretation: the second round of challenges

by Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J, Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E, Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A, Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D, Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R, Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C, Porter, Jacob S, Rasmussen, Simon, Rees, Evan R, Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L, Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Published in Nature methods

BACTOME—a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates

by Hornischer, Klaus, Khaledi, Ariane, Pohl, Sarah, Schniederjans, Monika, Pezoldt, Lorena, Casilag, Fiordiligie, Muthukumarasamy, Uthayakumar, Bruchmann, Sebastian, Thöming, Janne, Kordes, Adrian, Häussler, Susanne
Published in Nucleic acids research

Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa

by Khaledi, Ariane, Schniederjans, Monika, Pohl, Sarah, Rainer, Roman, Bodenhofer, Ulrich, Xia, Boyang, Klawonn, Frank, Bruchmann, Sebastian, Preusse, Matthias, Eckweiler, Denitsa, Dötsch, Andreas, Häussler, Susanne
Published in Antimicrobial agents and chemotherapy

Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates

by Muthukumarasamy, Uthayakumar, Preusse, Matthias, Kordes, Adrian, Koska, Michal, Schniederjans, Monika, Khaledi, Ariane, Häussler, Susanne
Published in Genome biology and evolution

The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discovery

by Sommer, Roman, Wagner, Stefanie, Varrot, Annabelle, Nycholat, Corwin M, Khaledi, Ariane, Häussler, Susanne, Paulson, James C, Imberty, Anne, Titz, Alexander
Published in Chemical science (Cambridge)

Groundwater, soil and compost, as possible sources of virulent and antibiotic-resistant Pseudomonas aeruginosa

by Kaszab, Edit, Radó, Júlia, Kriszt, Balázs, Pászti, Judit, Lesinszki, Virág, Szabó, Adám, Tóth, Gergő, Khaledi, Ariane, Szoboszlay, Sándor
Published in International journal of environmental health research

The extensive set of accessory Pseudomonas aeruginosa genomic components

by Pohl, Sarah, Klockgether, Jens, Eckweiler, Denitsa, Khaledi, Ariane, Schniederjans, Monika, Chouvarine, Philippe, Tümmler, Burkhard, Häussler, Susanne
Published in FEMS microbiology letters

The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discoveryElectronic supplementary information (ESI) available: Multiple sequence ali...

by Sommer, Roman, Wagner, Stefanie, Varrot, Annabelle, Nycholat, Corwin M, Khaledi, Ariane, Häussler, Susanne, Paulson, James C, Imberty, Anne, Titz, Alexander

The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discovery† †Electronic supplementary information (ESI) available: Multiple sequence...

by Sommer, Roman, Wagner, Stefanie, Varrot, Annabelle, Nycholat, Corwin M., Khaledi, Ariane, Häussler, Susanne, Paulson, James C., Imberty, Anne, Titz, Alexander
Published in Chemical science (Cambridge)