Gramene 2013: comparative plant genomics resources

by Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D’Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research

Ensembl Genomes 2020—enabling non-vertebrate genomic research

by Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul
Published in Nucleic acids research

Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms

by Brewer, Grace E., Clarkson, James J., Maurin, Olivier, Zuntini, Alexandre R., Barber, Vanessa, Bellot, Sidonie, Biggs, Nicola, Cowan, Robyn S., Davies, Nina M. J., Dodsworth, Steven, Edwards, Sara L., Eiserhardt, Wolf L., Epitawalage, Niroshini, Frisby, Sue, Grall, Aurélie, Kersey, Paul J., Pokorny, Lisa, Leitch, Ilia J., Forest, Félix, Baker, William J.
Published in Frontiers in plant science

Comparative analysis of repeat content in plant genomes, large and small

by Argentin, Joris, Bolser, Dan, Kersey, Paul J, Flicek, Paul
Published in Frontiers in plant science

Gramene 2016: comparative plant genomics and pathway resources

by Tello-Ruiz, Marcela K, Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M, Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A, Huerta, Laura, Keays, Maria, Tang, Y Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research

RNAcentral: an international database of ncRNA sequences

by Petrov, Anton I, Kay, Simon J E, Gibson, Richard, Kulesha, Eugene, Staines, Dan, Bruford, Elspeth A, Wright, Mathew W, Burge, Sarah, Finn, Robert D, Kersey, Paul J, Cochrane, Guy, Bateman, Alex, Griffiths-Jones, Sam, Harrow, Jennifer, Chan, Patricia P, Lowe, Todd M, Zwieb, Christian W, Wower, Jacek, Williams, Kelly P, Hudson, Corey M, Gutell, Robin, Clark, Michael B, Dinger, Marcel, Quek, Xiu Cheng, Bujnicki, Janusz M, Chua, Nam-Hai, Liu, Jun, Wang, Huan, Skogerbø, Geir, Zhao, Yi, Chen, Runsheng, Zhu, Weimin, Cole, James R, Chai, Benli, Huang, Hsien-Da, Huang, His-Yuan, Cherry, J Michael, Hatzigeorgiou, Artemis, Pruitt, Kim D
Published in Nucleic acids research

Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens

by Pedro, Helder, Yates, Andrew D, Kersey, Paul J, De Silva, Nishadi H
Published in Frontiers in microbiology

Data management challenges for artificial intelligence in plant and agricultural research [version 2; peer review: 2 approved]

by Williamson, Hugh F., Brettschneider, Julia, Caccamo, Mario, Davey, Robert P., Goble, Carole, Kersey, Paul J., May, Sean, Morris, Richard J., Ostler, Richard, Pridmore, Tony, Rawlings, Chris, Studholme, David, Tsaftaris, Sotirios A., Leonelli, Sabina
Published in F1000 research

Conservation Policy: Helping or hindering science to unlock properties of plants and fungi

by Williams, China, Walsh, Alexandra, Vaglica, Valentina, Sirakaya, Aysegül, Silva, Manuela, Dalle, Gemedo, Winterton, Deborah, Annecke, Wendy, Smith, Paul, Kersey, Paul J., Way, Michael, Antonelli, Alexandre, Cowell, Carly
Published in Plants, people, planet

Selecting for useful properties of plants and fungi – Novel approaches, opportunities, and challenges

by Kersey, Paul J., Collemare, Jerome, Cockel, Christopher, Das, Dibakar, Dulloo, Ehsan M., Kelly, Laura J., Lettice, Eoin, Malécot, Valery, Maxted, Nigel, Metheringham, Carey, Thormann, Imke, Leitch, Ilia J.
Published in Plants, people, planet

Uses and benefits of digital sequence information from plant genetic resources: Lessons learnt from botanical collections

by Cowell, Carly, Paton, Alan, Borrell, James S., Williams, China, Wilkin, Paul, Antonelli, Alexandre, Baker, William J., Buggs, Richard, Fay, Michael F., Gargiulo, Roberta, Grace, Olwen M., Kuhnhäuser, Benedikt G., Woudstra, Yannick, Kersey, Paul J.
Published in Plants, people, planet

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 1; peer review: 2 approved with reservations]

by Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J, Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Published in F1000 research

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

by Baker, William J, Bailey, Paul, Barber, Vanessa, Barker, Abigail, Bellot, Sidonie, Bishop, David, Botigué, Laura R, Brewer, Grace, Carruthers, Tom, Clarkson, James J, Cook, Jeffrey, Cowan, Robyn S, Dodsworth, Steven, Epitawalage, Niroshini, Françoso, Elaine, Gallego, Berta, Johnson, Matthew G, Kim, Jan T, Leempoel, Kevin, Maurin, Olivier, Mcginnie, Catherine, Pokorny, Lisa, Roy, Shyamali, Stone, Malcolm, Toledo, Eduardo, Wickett, Norman J, Zuntini, Alexandre R, Eiserhardt, Wolf L, Kersey, Paul J, Leitch, Ilia J, Forest, Félix
Published in Systematic biology

PomBase 2015: updates to the fission yeast database

by McDowall, Mark D., Harris, Midori A., Lock, Antonia, Rutherford, Kim, Staines, Daniel M., Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G., Wood, Valerie
Published in Nucleic acids research

Green plant genomes: What we know in an era of rapidly expanding opportunities

by Kress, W John, Soltis, Douglas E, Kersey, Paul J, Wegrzyn, Jill L, Leebens-Mack, James H, Gostel, Morgan R, Liu, Xin, Soltis, Pamela S
Published in Proceedings of the National Academy of Sciences - PNAS

The Earth BioGenome Project 2020: Starting the clock

by Lewin, Harris A, Richards, Stephen, Lieberman Aiden, Erez, Allende, Miguel L, Archibald, John M, Bálint, Miklós, Barker, Katharine B, Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L, Cai, Jing, Caperello, Nicolette D, Carlson, Keith, Castilla-Rubio, Juan Carlos, Chaw, Shu-Miaw, Chen, Lei, Childers, Anna K, Coddington, Jonathan A, Conde, Dalia A, Corominas, Montserrat, Crandall, Keith A, Crawford, Andrew J, DiPalma, Federica, Durbin, Richard, Ebenezer, ThankGod E, Edwards, Scott V, Fedrigo, Olivier, Flicek, Paul, Formenti, Giulio, Gibbs, Richard A, Gilbert, M Thomas P, Goldstein, Melissa M, Graves, Jennifer Marshall, Greely, Henry T, Grigoriev, Igor V, Hackett, Kevin J, Hall, Neil, Haussler, David, Helgen, Kristofer M, Hogg, Carolyn J, Isobe, Sachiko, Jakobsen, Kjetill Sigurd, Janke, Axel, Jarvis, Erich D, Johnson, Warren E, Jones, Steven J M, Karlsson, Elinor K, Kersey, Paul J, Kim, Jin-Hyoung, Kress, W John, Kuraku, Shigehiro, Lawniczak, Mara K N, Leebens-Mack, James H, Li, Xueyan, Lindblad-Toh, Kerstin, Liu, Xin, Lopez, Jose V, Marques-Bonet, Tomas, Mazard, Sophie, Mazet, Jonna A K, Mazzoni, Camila J, Myers, Eugene W, O'Neill, Rachel J, Paez, Sadye, Park, Hyun, Robinson, Gene E, Roquet, Cristina, Ryder, Oliver A, Sabir, Jamal S M, Shaffer, H Bradley, Shank, Timothy M, Sherkow, Jacob S, Soltis, Pamela S, Tang, Boping, Tedersoo, Leho, Uliano-Silva, Marcela, Wang, Kun, Wei, Xiaofeng, Wetzer, Regina, Wilson, Julia L, Xu, Xun, Yang, Huanming, Yoder, Anne D, Zhang, Guojie
Published in Proceedings of the National Academy of Sciences - PNAS

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

by Tello-Ruiz, Marcela K, Naithani, Sushma, Gupta, Parul, Olson, Andrew, Wei, Sharon, Preece, Justin, Jiao, Yinping, Wang, Bo, Chougule, Kapeel, Garg, Priyanka, Elser, Justin, Kumari, Sunita, Kumar, Vivek, Contreras-Moreira, Bruno, Naamati, Guy, George, Nancy, Cook, Justin, Bolser, Daniel, D’Eustachio, Peter, Stein, Lincoln D, Gupta, Amit, Xu, Weijia, Regala, Jennifer, Papatheodorou, Irene, Kersey, Paul J, Flicek, Paul, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

by Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan
Published in Nucleic acids research

Gramene 2018: unifying comparative genomics and pathway resources for plant research

by Tello-Ruiz, Marcela K, Naithani, Sushma, Stein, Joshua C, Gupta, Parul, Campbell, Michael, Olson, Andrew, Wei, Sharon, Preece, Justin, Geniza, Matthew J, Jiao, Yinping, Lee, Young Koung, Wang, Bo, Mulvaney, Joseph, Chougule, Kapeel, Elser, Justin, Al-Bader, Noor, Kumari, Sunita, Thomason, James, Kumar, Vivek, Bolser, Daniel M, Naamati, Guy, Tapanari, Electra, Fonseca, Nuno, Huerta, Laura, Iqbal, Haider, Keays, Maria, Munoz-Pomer Fuentes, Alfonso, Tang, Amy, Fabregat, Antonio, D'Eustachio, Peter, Weiser, Joel, Stein, Lincoln D, Petryszak, Robert, Papatheodorou, Irene, Kersey, Paul J, Lockhart, Patti, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen
Published in Nucleic acids research

PomBase: a comprehensive online resource for fission yeast

by Wood, Valerie, Harris, Midori A, McDowall, Mark D, Rutherford, Kim, Vaughan, Brendan W, Staines, Daniel M, Aslett, Martin, Lock, Antonia, Bähler, Jürg, Kersey, Paul J, Oliver, Stephen G
Published in Nucleic acids research