Increased stray gas abundance in a subset of drinking water wells near Marcellus shale gas extraction

by Jackson, Robert B., Vengosh, Avner, Darrah, Thomas H., Warner, Nathaniel R., Down, Adrian, Poreda, Robert J., Osborn, Stephen G., Zhao, Kaiguang, Karr, Jonathan D.
Published in Proceedings of the National Academy of Sciences - PNAS

Geochemical and isotopic variations in shallow groundwater in areas of the Fayetteville Shale development, north-central Arkansas

by Warner, Nathaniel R., Kresse, Timothy M., Hays, Phillip D., Down, Adrian, Karr, Jonathan D., Jackson, Robert B., Vengosh, Avner
Published in Applied geochemistry

Mapping urban pipeline leaks: Methane leaks across Boston

by Phillips, Nathan G., Ackley, Robert, Crosson, Eric R., Down, Adrian, Hutyra, Lucy R., Brondfield, Max, Karr, Jonathan D., Zhao, Kaiguang, Jackson, Robert B.
Published in Environmental pollution (1987)

Spatial and temporal trends in stable carbon and oxygen isotope ratios of juvenile winter flounder otoliths

by Pruell, Richard J, Taplin, Bryan K, Karr, Jonathan D
Published in Environmental biology of fishes

Low-level nitrate export from confined dairy farming detected in North Carolina streams using δ15N

by KARR, Jonathan D, SHOWERS, William J, JENNINGS, Gregory D
Published in Agriculture, ecosystems & environment

Stable oxygen and hydrogen isotopic tracers in Amazon shelf waters during Amasseds

by Karr, Jonathan D, Showers, William J
Published in Oceanologica acta

Low-level nitrate export from confined dairy farming detected in North Carolina streams using δ [formula omitted]

by Karr, Jonathan D., Showers, William J., Jennings, Gregory D.
Published in Agriculture, ecosystems & environment

Low-Level Nitrate Export from Confined Dairy Farming Detected in North Carolina Streams Using delta super(15)N

by Karr, Jonathan D, Showers, William J, Jennings, Gregory D
Published in Agriculture, ecosystems & environment

Tip of the iceberg

by Karr, Jonathan D
Published in Mother Jones

Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior

by Roth, Yosef D, Lian, Zhouyang, Pochiraju, Saahith, Shaikh, Bilal, Karr, Jonathan R
Published in Nucleic acids research

Emerging whole-cell modeling principles and methods

by Goldberg, Arthur P, Szigeti, Balázs, Chew, Yin Hoon, Sekar, John AP, Roth, Yosef D, Karr, Jonathan R
Published in Current opinion in biotechnology

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models

by Karr, Jonathan R, Williams, Alex H, Zucker, Jeremy D, Raue, Andreas, Steiert, Bernhard, Timmer, Jens, Kreutz, Clemens, Wilkinson, Simon, Allgood, Brandon A, Bot, Brian M, Hoff, Bruce R, Kellen, Michael R, Covert, Markus W, Stolovitzky, Gustavo A, Meyer, Pablo
Published in PLoS computational biology

Long-Term Studies Contribute Disproportionately to Ecology and Policy

by HUGHES, BRENT B., BEAS-LUNA, RODRIGO, BARNER, ALLISON K., BREWITT, KIMBERLY, BRUMBAUGH, DANIEL R., CERNY-CHIPMAN, ELIZABETH B., CLOSE, SARAH L., COBLENTZ, KYLE E., DE NESNERA, KRISTIN L., DROBNITCH, SARAH T., FIGURSKI, JARED D., FOCHT, BECKY, FRIEDMAN, MAYA, FREIWALD, JAN, HEADY, KRISTEN K., HEADY, WALTER N., HETTINGER, ANNALIESE, JOHNSON, ANGELA, KARR, KENDRA A., MAHONEY, BRENNA, MORITSCH, MONICA M., OSTERBACK, ANN-MARIE K., REIMER, JESSICA, ROBINSON, JONATHAN, ROHRER, TULLY, ROSE, JEREMY M., SABAL, MEGAN, SEGUI, LEAH M., SHEN, CHENCHEN, SULLIVAN, JENNA, ZUERCHER, RACHEL, RAIMONDI, PETER T., MENGE, BRUCE A., GRORUD-COLVERT, KIRSTEN, NOVAK, MARK, CARR, MARK H.
Published in Bioscience

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

by De Waegeneer, Maxime, Kolluru, Sai Saroja, Davie, Kristofer, Gardeux, Vincent, Saelens, Wouter, David, Fabrice P A, Brbić, Maria, Spanier, Katina, Leskovec, Jure, McLaughlin, Colleen N, Jones, Robert C, Shim, Jiwon, Tattikota, Sudhir Gopal, Schnorrer, Frank, Rust, Katja, Nystul, Todd G, Ribeiro, Carlos, Pal, Soumitra, Mahadevaraju, Sharvani, Przytycka, Teresa M, Allen, Aaron M, Goodwin, Stephen F, Fuller, Margaret T, Matunis, Erika L, Galenza, Anthony, O'Brien, Lucy Erin, Jasper, Heinrich, Oliver, Brian, Perrimon, Norbert, Deplancke, Bart, Quake, Stephen R, Aerts, Stein, Ahmed-Braimah, Yasir, Arbeitman, Michelle, Ariss, Majd M, Augsburger, Jordan, Ayush, Kumar, Bolival, Benjamin, Brantley, Susanna E, Brill, Julie A, Brown, Nora C, Cai, Xiaoyu Tracy, Chang, Amy, Clandinin, Thomas R, Crasta, Sheela, Engert, Stefanie, Floc'hlay, Swann, González-Segarra, Amanda J, Groves, Andrew K, Gumbin, Samantha, Harris, Devon E, Heifetz, Yael, Holtz, Stephen L, Hudry, Bruno, Hung, Ruei-Jiun, Jan, Yuh Nung, Jaszczak, Jacob S, Karr, Timothy L, Kim, Seung K, Kockel, Lutz, Konstantinides, Nikolaos, Kornberg, Thomas B, Labott, Andrew Thomas, Laturney, Meghan, Lehmann, Ruth, Li, Jiefu, Li, Joshua Shing Shun, Li, Kai, Li, Liying, Li, Tun, Liu, Yifang, Manning, Jonathan, Mase, Anjeli, Matera-Vatnick, Mikaela, Neff, Norma, Ngo, Sang, Nielsen, Tanja, Osumi-Sutherland, David, Özel, Mehmet Neset, Papatheodorou, Irene, Dos Santos, Gilberto, Scott, Kristin, Sherlekar, Aparna, Shiu, Philip, Sims, David, Sit, Rene V, Slaidina, Maija, Su, Yu-Han, Sutton, Daniel, Tan, Michelle, Tastekin, Ibrahim, Treiber, Christoph, Vogler, Georg, Wang, Wanpeng, Wilson, Rachel I, Wong, Yiu-Cheung E, Xie, Anthony, Yan, Jia, Yao, Zepeng, Zhu, Ruijun
Published in Science (American Association for the Advancement of Science)

SBML Level 3: an extensible format for the exchange and reuse of biological models

by Keating, Sarah M, Waltemath, Dagmar, König, Matthias, Zhang, Fengkai, Chaouiya, Claudine, Finney, Andrew, Gillespie, Colin S, Helikar, Tomáš, Malik‐Sheriff, Rahuman S, Moraru, Ion I, Naldi, Aurélien, Sahle, Sven, Schaff, James C, Smith, Lucian P, Swat, Maciej J, Thieffry, Denis, Wilkinson, Darren J, Blinov, Michael L, Begley, Kimberly, Faeder, James R, Gómez, Harold F, Hamm, Thomas M, Inagaki, Yuichiro, Liebermeister, Wolfram, Lucio, Daniel, Proctor, Carole J, Raman, Karthik, Rodriguez, Nicolas, Shapiro, Bruce E, Tanimura, Naoki, Wagner, John, Sauro, Herbert M, Palsson, Bernhard, Bolouri, Hamid, Kitano, Hiroaki, Funahashi, Akira, Hermjakob, Henning, Doyle, John C, Hucka, Michael, Adams, Richard R, Allen, Nicholas A, Angermann, Bastian R, Antoniotti, Marco, Courtot, Mélanie, Cox, Chris D, Dalle Pezze, Piero, Demir, Emek, Denney, William S, Dharuri, Harish, Dorier, Julien, Drasdo, Dirk, Ebrahim, Ali, Eichner, Johannes, Elf, Johan, Flamm, Christoph, Fleming, Ronan MT, Fröhlich, Martina, Gonçalves, Emanuel, Golebiewski, Martin, Grabski, Hovakim, Heavner, Benjamin D, Hyduke, Daniel R, Jong, Hidde, Juty, Nick, Karp, Peter D, Kiselev, Ilya, Klipp, Edda, Knüpfer, Christian, Kolpakov, Fedor, Laibe, Camille, Lawless, Conor, Li, Lu, Machne, Rainer, Mendes, Pedro, Mittag, Florian, Monteiro, Pedro T, Natarajan, Kedar Nath, Nguyen, Tramy, Pfau, Thomas, Phair, Robert D, Radivoyevitch, Tomas, Rohwer, Johann M, Saez‐Rodriguez, Julio, Scharm, Martin, Schmidt, Henning, Schreiber, Falk, Schubert, Michael, Schulte, Roman, Sealfon, Stuart C, Soliman, Sylvain, Stefan, Melanie I, Sullivan, Devin P, Takahashi, Koichi, Teusink, Bas, Tolnay, David, Vazirabad, Ibrahim, Kamp, Axel, Wittig, Ulrike, Wrzodek, Clemens, Zucker, Jeremy
Published in Molecular systems biology

A blueprint for human whole-cell modeling

by Szigeti, Balázs, Roth, Yosef D., Sekar, John A.P., Goldberg, Arthur P., Pochiraju, Saahith C., Karr, Jonathan R.
Published in Current opinion in systems biology

Postfire Management on Forested Public Lands of the Western United States

by BESCHTA, ROBERT L., RHODES, JONATHAN J., KAUFFMAN, J. BOONE, GRESSWELL, ROBERT E., MINSHALL, G. WAYNE, KARR, JAMES R., PERRY, DAVID A., HAUER, F. RICHARD, FRISSELL, CHRISTOPHER A.
Published in Conservation biology

Twisted, Two-Faced Porphyrins as Hosts for Bispyridyl Fullerenes: Construction and Photophysical Properties

by Xie, Yongshu, Hill, Jonathan P, Schumacher, Amy Lea, Sandanayaka, Atula S. D, Araki, Yasuyuki, Karr, Paul A, Labuta, Jan, D’Souza, Francis, Ito, Osamu, Anson, Christopher E, Powell, Annie K, Ariga, Katsuhiko
Published in Journal of physical chemistry. C

The Effects of Postfire Salvage Logging on Aquatic Ecosystems in the American West

by KARR, JAMES R, RHODES, JONATHAN J, MINSHALL, G. WAYNE, HAUER, F. RICHARD, BESCHTA, ROBERT L, FRISSELL, CHRISTOPHER A, PERRY, DAVID A
Published in Bioscience

Corrigendum: Long-Term Studies Contribute Disproportionately to Ecology and Policy

by HUGHES, BRENT B., BEAS-LUNA, RODRIGO, BARNER, ALLISON K., BREWITT, KIMBERLY, BRUMBAUGH, DANIEL R., CERNY-CHIPMAN, ELIZABETH B., CLOSE, SARAH L., COBLENTZ, KYLE E., DE NESNERA, KRISTIN L., DROBNITCH, SARAH T., FIGURSKI, JARED D., FOCHT, BECKY, FRIEDMAN, MAYA, FREIWALD, JAN, HEADY, KRISTEN K., HEADY, WALTER N., HETTINGER, ANNALIESE, JOHNSON, ANGELA, KARR, KENDRA A., MAHONEY, BRENNA, MORITSCH, MONICA M., OSTERBACK, ANN-MARIE K., REIMER, JESSICA, ROBINSON, JONATHAN, ROHRER, TULLY, ROSE, JEREMY M., SABAL, MEGAN, SEGUI, LEAH M., SHEN, CHENCHEN, SULLIVAN, JENNA, ZUERCHER, RACHEL, RAIMONDI, PETER T., MENGE, BRUCE A., GRORUD-COLVERT, KIRSTEN, NOVAK, MARK, CARR, MARK H.
Published in Bioscience