An Isochore Framework Underlies Chromatin Architecture

by Jabbari, Kamel, Bernardi, Giorgio
Published in PloS one

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

by Wu, G Albert, Prochnik, Simon, Jenkins, Jerry, Salse, Jerome, Hellsten, Uffe, Murat, Florent, Perrier, Xavier, Ruiz, Manuel, Scalabrin, Simone, Terol, Javier, Takita, Marco Aurélio, Labadie, Karine, Poulain, Julie, Couloux, Arnaud, Jabbari, Kamel, Cattonaro, Federica, Del Fabbro, Cristian, Pinosio, Sara, Zuccolo, Andrea, Chapman, Jarrod, Grimwood, Jane, Tadeo, Francisco R, Estornell, Leandro H, Muñoz-Sanz, Juan V, Ibanez, Victoria, Herrero-Ortega, Amparo, Aleza, Pablo, Pérez-Pérez, Julián, Ramón, Daniel, Brunel, Dominique, Luro, François, Chen, Chunxian, Farmerie, William G, Desany, Brian, Kodira, Chinnappa, Mohiuddin, Mohammed, Harkins, Tim, Fredrikson, Karin, Burns, Paul, Lomsadze, Alexandre, Borodovsky, Mark, Reforgiato, Giuseppe, Freitas-Astúa, Juliana, Quetier, Francis, Navarro, Luis, Roose, Mikeal, Wincker, Patrick, Schmutz, Jeremy, Morgante, Michele, Machado, Marcos Antonio, Talon, Manuel, Jaillon, Olivier, Ollitrault, Patrick, Gmitter, Frederick, Rokhsar, Daniel
Published in Nature biotechnology

A common genomic code for chromatin architecture and recombination landscape

by Jabbari, Kamel, Wirtz, Johannes, Rauscher, Martina, Wiehe, Thomas
Published in PloS one

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles

by Rayko, Edda, Maumus, Florian, Maheswari, Uma, Jabbari, Kamel, Bowler, Chris
Published in The New phytologist

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

by Cock, J. Mark, Sterck, Lieven, Rouzé, Pierre, Scornet, Delphine, Allen, Andrew E, Amoutzias, Grigoris, Anthouard, Veronique, Artiguenave, François, Aury, Jean-Marc, Badger, Jonathan H, Beszteri, Bank, Billiau, Kenny, Bonnet, Eric, Bothwell, John H, Bowler, Chris, Boyen, Catherine, Brownlee, Colin, Carrano, Carl J, Charrier, Bénédicte, Cho, Ga Youn, Coelho, Susana M, Collén, Jonas, Corre, Erwan, Da Silva, Corinne, Delage, Ludovic, Delaroque, Nicolas, Dittami, Simon M, Doulbeau, Sylvie, Elias, Marek, Farnham, Garry, Gachon, Claire M. M, Gschloessl, Bernhard, Heesch, Svenja, Jabbari, Kamel, Jubin, Claire, Kawai, Hiroshi, Kimura, Kei, Kloareg, Bernard, Küpper, Frithjof C, Lang, Daniel, Le Bail, Aude, Leblanc, Catherine, Lerouge, Patrice, Lohr, Martin, Lopez, Pascal J, Martens, Cindy, Maumus, Florian, Michel, Gurvan, Miranda-Saavedra, Diego, Morales, Julia, Moreau, Hervé, Motomura, Taizo, Nagasato, Chikako, Napoli, Carolyn A, Nelson, David R, Nyvall-Collén, Pi, Peters, Akira F, Pommier, Cyril, Potin, Philippe, Poulain, Julie, Quesneville, Hadi, Read, Betsy, Rensing, Stefan A, Ritter, Andrés, Rousvoal, Sylvie, Samanta, Manoj, Samson, Gaelle, Schroeder, Declan C, Ségurens, Béatrice, Strittmatter, Martina, Tonon, Thierry, Tregear, James W, Valentin, Klaus, von Dassow, Peter, Yamagishi, Takahiro, Van de Peer, Yves, Wincker, Patrick
Published in Nature (London)

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

by Collén, Jonas, Porcel, Betina, Carré, Wilfrid, Ball, Steven G., Chaparro, Cristian, Tonon, Thierry, Barbeyron, Tristan, Michel, Gurvan, Noel, Benjamin, Valentin, Klaus, Elias, Marek, Artiguenave, François, Arun, Alok, Aury, Jean-Marc, Barbosa-Neto, José F., Bothwell, John H., Bouget, François-Yves, Brillet, Loraine, Cabello-Hurtado, Francisco, Capella-Gutiérrez, Salvador, Charrier, Bénédicte, Cladière, Lionel, Cock, J. Mark, Coelho, Susana M., Colleoni, Christophe, Czjzek, Mirjam, Da Silva, Corinne, Delage, Ludovic, Denoeud, France, Deschamps, Philippe, Dittami, Simon M., Gabaldón, Toni, Gachon, Claire M. M., Groisillier, Agnès, Hervé, Cécile, Jabbari, Kamel, Katinka, Michael, Kloareg, Bernard, Kowalczyk, Nathalie, Labadie, Karine, Leblanc, Catherine, Lopez, Pascal J., McLachlan, Deirdre H., Meslet-Cladiere, Laurence, Moustafa, Ahmed, Nehr, Zofia, Collén, Pi Nyvall, Panaud, Olivier, Partensky, Frédéric, Poulain, Julie, Rensing, Stefan A., Rousvoal, Sylvie, Samson, Gaelle, Symeonidi, Aikaterini, Weissenbach, Jean, Zambounis, Antonios, Wincker, Patrick, Boyen, Catherine
Published in Proceedings of the National Academy of Sciences - PNAS

LeafGo: Leaf to Genome, a quick workflow to produce high-quality de novo plant genomes using long-read sequencing technology

by Driguez, Patrick, Bougouffa, Salim, Carty, Karen, Putra, Alexander, Jabbari, Kamel, Reddy, Muppala, Soppe, Richard, Cheung, Ming Sin, Fukasawa, Yoshinori, Ermini, Luca
Published in Genome Biology

Cytosine methylation and CpG, TpG (CpA) and TpA frequencies

by Jabbari, Kamel, Bernardi, Giorgio
Published in Gene

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

by Maumus, Florian, Allen, Andrew E, Mhiri, Corinne, Hu, Hanhua, Jabbari, Kamel, Vardi, Assaf, Grandbastien, Marie-Angèle, Bowler, Chris
Published in BMC genomics

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

by Derelle, E, Ferraz, C, Rombauts, S, Rouze, P, Worden, A.Z, Robbens, S, Partensky, F, Degroeve, S, Echeynie, S, Cooke, R
Published in Proceedings of the National Academy of Sciences - PNAS

The Tiny Eukaryote Ostreococcus Provides Genomic Insights into the Paradox of Plankton Speciation

by Palenik, Brian, Grimwood, Jane, Aerts, Andrea, Rouzé, Pierre, Salamov, Asaf, Putnam, Nicholas, Dupont, Chris, Jorgensen, Richard, Derelle, Evelyne, Rombauts, Stephane, Zhou, Kemin, Otillar, Robert, Merchant, Sabeeha S., Podell, Sheila, Gaasterland, Terry, Napoli, Carolyn, Gendler, Karla, Manuell, Andrea, Tai, Vera, Vallon, Olivier, Piganeau, Gwenael, Jancek, Séverine, Heijde, Marc, Jabbari, Kamel, Bowler, Chris, Lohr, Martin, Robbens, Steven, Werner, Gregory, Dubchak, Inna, Pazour, Gregory J., Ren, Qinghu, Paulsen, Ian, Delwiche, Chuck, Schmutz, Jeremy, Rokhsar, Daniel, Van de Peer, Yves, Moreau, Hervé, Grigoriev, Igor V.
Published in Proceedings of the National Academy of Sciences - PNAS

Leveraging the power of high performance computing for next generation sequencing data analysis: tricks and twists from a high throughput exome workflow

by Kawalia, Amit, Motameny, Susanne, Wonczak, Stephan, Thiele, Holger, Nieroda, Lech, Jabbari, Kamel, Borowski, Stefan, Sinha, Vishal, Gunia, Wilfried, Lang, Ulrich, Achter, Viktor, Nürnberg, Peter
Published in PloS one

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants

by Porcel, Betina M, Denoeud, France, Opperdoes, Fred, Noel, Benjamin, Madoui, Mohammed-Amine, Hammarton, Tansy C, Field, Mark C, Da Silva, Corinne, Couloux, Arnaud, Poulain, Julie, Katinka, Michael, Jabbari, Kamel, Aury, Jean-Marc, Campbell, David A, Cintron, Roxana, Dickens, Nicholas J, Docampo, Roberto, Sturm, Nancy R, Koumandou, V Lila, Fabre, Sandrine, Flegontov, Pavel, Lukeš, Julius, Michaeli, Shulamit, Mottram, Jeremy C, Szöőr, Balázs, Zilberstein, Dan, Bringaud, Frédéric, Wincker, Patrick, Dollet, Michel
Published in PLoS genetics

The Diverging Routes of BORIS and CTCF: An Interactomic and Phylogenomic Analysis

by Jabbari, Kamel, Heger, Peter, Sharma, Ranu, Wiehe, Thomas
Published in Life (Basel, Switzerland)

Comparative genomics of the pennate diatom Phaeodactylum tricornutum

by Montsant, A, Jabbari, K, Maheswari, U, Bowler, C
Published in Plant physiology (Bethesda)

Rare gene deletions in genetic generalized and Rolandic epilepsies

by Jabbari, Kamel, Bobbili, Dheeraj R, Lal, Dennis, Reinthaler, Eva M, Schubert, Julian, Wolking, Stefan, Sinha, Vishal, Motameny, Susanne, Thiele, Holger, Kawalia, Amit, Altmüller, Janine, Toliat, Mohammad Reza, Kraaij, Robert, van Rooij, Jeroen, Uitterlinden, André G, Ikram, M Arfan, Zara, Federico, Lehesjoki, Anna-Elina, Krause, Roland, Zimprich, Fritz, Sander, Thomas, Neubauer, Bernd A, May, Patrick, Lerche, Holger, Nürnberg, Peter
Published in PloS one

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

by Bowler, Chris, Allen, Andrew E, Badger, Jonathan H, Grimwood, Jane, Jabbari, Kamel, Kuo, Alan, Maheswari, Uma, Martens, Cindy, Maumus, Florian, Otillar, Robert P, Rayko, Edda, Salamov, Asaf, Vandepoele, Klaas, Beszteri, Bank, Gruber, Ansgar, Heijde, Marc, Katinka, Michael, Mock, Thomas, Valentin, Klaus, Verret, Fréderic, Berges, John A, Brownlee, Colin, Cadoret, Jean-Paul, Chiovitti, Anthony, Choi, Chang Jae, Coesel, Sacha, De Martino, Alessandra, Detter, J. Chris, Durkin, Colleen, Falciatore, Angela, Fournet, Jérome, Haruta, Miyoshi, Huysman, Marie J. J, Jenkins, Bethany D, Jiroutova, Katerina, Jorgensen, Richard E, Joubert, Yolaine, Kaplan, Aaron, Kröger, Nils, Kroth, Peter G, La Roche, Julie, Lindquist, Erica, Lommer, Markus, Martin-Jézéquel, Véronique, Lopez, Pascal J, Lucas, Susan, Mangogna, Manuela, McGinnis, Karen, Medlin, Linda K, Montsant, Anton, Secq, Marie-Pierre Oudot-Le, Napoli, Carolyn, Obornik, Miroslav, Parker, Micaela Schnitzler, Petit, Jean-Louis, Porcel, Betina M, Poulsen, Nicole, Robison, Matthew, Rychlewski, Leszek, Rynearson, Tatiana A, Schmutz, Jeremy, Shapiro, Harris, Siaut, Magali, Stanley, Michele, Sussman, Michael R, Taylor, Alison R, Vardi, Assaf, von Dassow, Peter, Vyverman, Wim, Willis, Anusuya, Wyrwicz, Lucjan S, Rokhsar, Daniel S, Weissenbach, Jean, Armbrust, E. Virginia, Green, Beverley R, Van de Peer, Yves, Grigoriev, Igor V
Published in Nature

DNA sequence-dependent chromatin architecture and nuclear hubs formation

by Jabbari, Kamel, Chakraborty, Maharshi, Wiehe, Thomas
Published in Scientific reports

Similar integration but different stability of Alus and LINEs in the human genome

by Pavlícek, A, Jabbari, K, Paces, J, Paces, V, Hejnar, J V, Bernardi, G
Published in Gene

A genomic view on epilepsy and autism candidate genes

by Jabbari, Kamel, Nürnberg, Peter
Published in Genomics (San Diego, Calif.)