Accurate and efficient detection of gene fusions from RNA sequencing data by Uhrig, Sebastian, Ellermann, Julia, Walther, Tatjana, Burkhardt, Pauline, Fröhlich, Martina, Hutter, Barbara, Toprak, Umut H, Neumann, Olaf, Stenzinger, Albrecht, Scholl, Claudia, Fröhling, Stefan, Brors, Benedikt

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Integrative genomic and transcriptomic analysis of leiomyosarcoma by Chudasama, Priya, Mughal, Sadaf S, Sanders, Mathijs A, Hübschmann, Daniel, Chung, Inn, Deeg, Katharina I, Wong, Siao-Han, Rabe, Sophie, Hlevnjak, Mario, Zapatka, Marc, Ernst, Aurélie, Kleinheinz, Kortine, Schlesner, Matthias, Sieverling, Lina, Klink, Barbara, Schröck, Evelin, Hoogenboezem, Remco M, Kasper, Bernd, Heilig, Christoph E, Egerer, Gerlinde, Wolf, Stephan, von Kalle, Christof, Eils, Roland, Stenzinger, Albrecht, Weichert, Wilko, Glimm, Hanno, Gröschel, Stefan, Kopp, Hans-Georg, Omlor, Georg, Lehner, Burkhard, Bauer, Sebastian, Schimmack, Simon, Ulrich, Alexis, Mechtersheimer, Gunhild, Rippe, Karsten, Brors, Benedikt, Hutter, Barbara, Renner, Marcus, Hohenberger, Peter, Scholl, Claudia, Fröhling, Stefan

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NRG1 Fusions in KRAS Wild-Type Pancreatic Cancer by Heining, Christoph, Horak, Peter, Uhrig, Sebastian, Codo, Paula L, Klink, Barbara, Hutter, Barbara, Fröhlich, Martina, Bonekamp, David, Richter, Daniela, Steiger, Katja, Penzel, Roland, Endris, Volker, Ehrenberg, Karl Roland, Frank, Stephanie, Kleinheinz, Kortine, Toprak, Umut H, Schlesner, Matthias, Mandal, Ranadip, Schulz, Lothar, Lambertz, Helmut, Fetscher, Sebastian, Bitzer, Michael, Malek, Nisar P, Horger, Marius, Giese, Nathalia A, Strobel, Oliver, Hackert, Thilo, Springfeld, Christoph, Feuerbach, Lars, Bergmann, Frank, Schröck, Evelin, von Kalle, Christof, Weichert, Wilko, Scholl, Claudia, Ball, Claudia R, Stenzinger, Albrecht, Brors, Benedikt, Fröhling, Stefan, Glimm, Hanno

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TelomereHunter - in silico estimation of telomere content and composition from cancer genomes by Feuerbach, Lars, Sieverling, Lina, Deeg, Katharina I, Ginsbach, Philip, Hutter, Barbara, Buchhalter, Ivo, Northcott, Paul A, Mughal, Sadaf S, Chudasama, Priya, Glimm, Hanno, Scholl, Claudia, Lichter, Peter, Fröhling, Stefan, Pfister, Stefan M, Jones, David T W, Rippe, Karsten, Brors, Benedikt

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The landscape of chromothripsis across adult cancer types by Voronina, Natalia, Wong, John K L, Hübschmann, Daniel, Hlevnjak, Mario, Uhrig, Sebastian, Heilig, Christoph E, Horak, Peter, Kreutzfeldt, Simon, Mock, Andreas, Stenzinger, Albrecht, Hutter, Barbara, Fröhlich, Martina, Brors, Benedikt, Jahn, Arne, Klink, Barbara, Gieldon, Laura, Sieverling, Lina, Feuerbach, Lars, Chudasama, Priya, Beck, Katja, Kroiss, Matthias, Heining, Christoph, Möhrmann, Lino, Fischer, Andrea, Schröck, Evelin, Glimm, Hanno, Zapatka, Marc, Lichter, Peter, Fröhling, Stefan, Ernst, Aurélie

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Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer by Ishaque, Naveed, Abba, Mohammed L, Hauser, Christine, Patil, Nitin, Paramasivam, Nagarajan, Huebschmann, Daniel, Leupold, Jörg Hendrik, Balasubramanian, Gnana Prakash, Kleinheinz, Kortine, Toprak, Umut H, Hutter, Barbara, Benner, Axel, Shavinskaya, Anna, Zhou, Chan, Gu, Zuguang, Kerssemakers, Jules, Marx, Alexander, Moniuszko, Marcin, Kozlowski, Miroslaw, Reszec, Joanna, Niklinski, Jacek, Eils, Jürgen, Schlesner, Matthias, Eils, Roland, Brors, Benedikt, Allgayer, Heike

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Whole-exome sequencing in eccrine porocarcinoma indicates promising therapeutic strategies by Denisova, Evgeniya, Westphal, Dana, Surowy, Harald M, Meier, Friedegund, Hutter, Barbara, Reifenberger, Julia, Rütten, Arno, Schulz, Alexander, Sergon, Mildred, Ziemer, Mirjana, Brors, Benedikt, Betz, Regina C, Redler, Silke

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Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies by Rieber, Nora, Zapatka, Marc, Lasitschka, Bärbel, Jones, David, Northcott, Paul, Hutter, Barbara, Jäger, Natalie, Kool, Marcel, Taylor, Michael, Lichter, Peter, Pfister, Stefan, Wolf, Stephan, Brors, Benedikt, Eils, Roland

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From somatic variants towards precision oncology: Evidence-driven reporting of treatment options in molecular tumor boards by Perera-Bel, Júlia, Hutter, Barbara, Heining, Christoph, Bleckmann, Annalen, Fröhlich, Martina, Fröhling, Stefan, Glimm, Hanno, Brors, Benedikt, Beißbarth, Tim

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Nivolumab maintenance after salvage autologous stem cell transplantation results in long‐term remission in multiple relapsed primary CNS lymphoma by Terziev, Denis, Hutter, Barbara, Klink, Barbara, Stenzinger, Albrecht, Stögbauer, Fabian, Glimm, Hanno, Fröhling, Stefan, Wickenhauser, Claudia, Jordan, Karin, Hurtz, Hans‐Jürgen, Müller, Lutz P., Rüssel, Jörn, Weber, Thomas

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Imprinted genes show unique patterns of sequence conservation by Hutter, Barbara, Bieg, Matthias, Helms, Volkhard, Paulsen, Martina

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Framework for quality assessment of whole genome cancer sequences by Whalley, Justin P, Buchhalter, Ivo, Rheinbay, Esther, Raine, Keiran M, Stobbe, Miranda D, Kleinheinz, Kortine, Werner, Johannes, Beltran, Sergi, Gut, Marta, Hübschmann, Daniel, Hutter, Barbara, Livitz, Dimitri, Perry, Marc D, Rosenberg, Mara, Saksena, Gordon, Trotta, Jean-Rémi, Eils, Roland, Gerhard, Daniela S, Campbell, Peter J, Schlesner, Matthias, Gut, Ivo G

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NCT/DKFZ MASTER handbook of interpreting whole-genome, transcriptome, and methylome data for precision oncology by Mock, Andreas, Teleanu, Maria-Veronica, Kreutzfeldt, Simon, Heilig, Christoph E, Hüllein, Jennifer, Möhrmann, Lino, Jahn, Arne, Hanf, Dorothea, Kerle, Irina A, Singh, Hans Martin, Hutter, Barbara, Uhrig, Sebastian, Fröhlich, Martina, Neumann, Olaf, Hartig, Andreas, Brückmann, Sascha, Hirsch, Steffen, Grund, Kerstin, Dikow, Nicola, Lipka, Daniel B, Renner, Marcus, Bhatti, Irfan Ahmed, Apostolidis, Leonidas, Schlenk, Richard F, Schaaf, Christian P, Stenzinger, Albrecht, Schröck, Evelin, Hübschmann, Daniel, Heining, Christoph, Horak, Peter, Glimm, Hanno, Fröhling, Stefan

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Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters by Behjati Ardakani, Fatemeh, Kattler, Kathrin, Nordström, Karl, Gasparoni, Nina, Gasparoni, Gilles, Fuchs, Sarah, Sinha, Anupam, Barann, Matthias, Ebert, Peter, Fischer, Jonas, Hutter, Barbara, Zipprich, Gideon, Imbusch, Charles D, Felder, Bärbel, Eils, Jürgen, Brors, Benedikt, Lengauer, Thomas, Manke, Thomas, Rosenstiel, Philip, Walter, Jörn, Schulz, Marcel H

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Ruxolitinib is effective in the treatment of a patient with refractory T‐ALL by Jaramillo, Sonia, Hennemann, Hannah, Horak, Peter, Teleanu, Veronica, Heilig, Christoph E., Hutter, Barbara, Stenzinger, Albrecht, Glimm, Hanno, Goeppert, Benjamin, Müller‐Tidow, Carsten, Fröhling, Stefan, Schönland, Stefan, Schlenk, Richard F.

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Divergence of imprinted genes during mammalian evolution by Hutter, Barbara, Bieg, Matthias, Helms, Volkhard, Paulsen, Martina

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The whole-genome landscape of medulloblastoma subtypes by Northcott, Paul A, Buchhalter, Ivo, Morrissy, A Sorana, Hovestadt, Volker, Weischenfeldt, Joachim, Ehrenberger, Tobias, Gröbner, Susanne, Segura-Wang, Maia, Zichner, Thomas, Rudneva, Vasilisa A, Warnatz, Hans-Jörg, Sidiropoulos, Nikos, Phillips, Aaron H, Schumacher, Steven, Kleinheinz, Kortine, Waszak, Sebastian M, Erkek, Serap, Jones, David T W, Worst, Barbara C, Kool, Marcel, Zapatka, Marc, Jäger, Natalie, Chavez, Lukas, Hutter, Barbara, Bieg, Matthias, Paramasivam, Nagarajan, Heinold, Michael, Gu, Zuguang, Ishaque, Naveed, Jäger-Schmidt, Christina, Imbusch, Charles D, Jugold, Alke, Hübschmann, Daniel, Risch, Thomas, Amstislavskiy, Vyacheslav, Gonzalez, Francisco German Rodriguez, Weber, Ursula D, Wolf, Stephan, Robinson, Giles W, Zhou, Xin, Wu, Gang, Finkelstein, David, Liu, Yanling, Cavalli, Florence M G, Luu, Betty, Ramaswamy, Vijay, Wu, Xiaochong, Koster, Jan, Ryzhova, Marina, Cho, Yoon-Jae, Pomeroy, Scott L, Herold-Mende, Christel, Schuhmann, Martin, Ebinger, Martin, Liau, Linda M, Mora, Jaume, McLendon, Roger E, Jabado, Nada, Kumabe, Toshihiro, Chuah, Eric, Ma, Yussanne, Moore, Richard A, Mungall, Andrew J, Mungall, Karen L, Thiessen, Nina, Tse, Kane, Wong, Tina, Jones, Steven J M, Witt, Olaf, Milde, Till, Von Deimling, Andreas, Capper, David, Korshunov, Andrey, Yaspo, Marie-Laure, Kriwacki, Richard, Gajjar, Amar, Zhang, Jinghui, Beroukhim, Rameen, Fraenkel, Ernest, Korbel, Jan O, Brors, Benedikt, Schlesner, Matthias, Eils, Roland, Marra, Marco A, Pfister, Stefan M, Taylor, Michael D, Lichter, Peter

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Quantitative and qualitative sex differences in spatial navigation by LÖVDÉN, MARTIN, HERLITZ, AGNETA, SCHELLENBACH, MICHAEL, GROSSMAN-HUTTER, BARBARA, KRÜGER, ANTONIO, LINDENBERGER, ULMAN

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Dissecting the genomic complexity underlying medulloblastoma by Jones, David T W, Jäger, Natalie, Kool, Marcel, Zichner, Thomas, Hutter, Barbara, Sultan, Marc, Cho, Yoon-Jae, Pugh, Trevor J, Hovestadt, Volker, Stütz, Adrian M, Rausch, Tobias, Warnatz, Hans-Jörg, Ryzhova, Marina, Bender, Sebastian, Sturm, Dominik, Pleier, Sabrina, Cin, Huriye, Pfaff, Elke, Sieber, Laura, Wittmann, Andrea, Remke, Marc, Witt, Hendrik, Hutter, Sonja, Tzaridis, Theophilos, Weischenfeldt, Joachim, Raeder, Benjamin, Avci, Meryem, Amstislavskiy, Vyacheslav, Zapatka, Marc, Weber, Ursula D, Wang, Qi, Lasitschka, Bärbel, Bartholomae, Cynthia C, Schmidt, Manfred, von Kalle, Christof, Ast, Volker, Lawerenz, Chris, Eils, Jürgen, Kabbe, Rolf, Benes, Vladimir, van Sluis, Peter, Koster, Jan, Volckmann, Richard, Shih, David, Betts, Matthew J, Russell, Robert B, Coco, Simona, Tonini, Gian Paolo, Schüller, Ulrich, Hans, Volkmar, Graf, Norbert, Kim, Yoo-Jin, Monoranu, Camelia, Roggendorf, Wolfgang, Unterberg, Andreas, Herold-Mende, Christel, Milde, Till, Kulozik, Andreas E, von Deimling, Andreas, Witt, Olaf, Maass, Eberhard, Rössler, Jochen, Ebinger, Martin, Schuhmann, Martin U, Frühwald, Michael C, Hasselblatt, Martin, Jabado, Nada, Rutkowski, Stefan, von Bueren, André O, Williamson, Dan, Clifford, Steven C, McCabe, Martin G, Collins, V Peter, Wolf, Stephan, Wiemann, Stefan, Lehrach, Hans, Brors, Benedikt, Scheurlen, Wolfram, Felsberg, Jörg, Reifenberger, Guido, Northcott, Paul A, Taylor, Michael D, Meyerson, Matthew, Pomeroy, Scott L, Yaspo, Marie-Laure, Korbel, Jan O, Korshunov, Andrey, Eils, Roland, Pfister, Stefan M, Lichter, Peter

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Comprehensive Genomic and Transcriptomic Analysis for Guiding Therapeutic Decisions in Patients with Rare Cancers by Horak, Peter, Heining, Christoph, Kreutzfeldt, Simon, Hutter, Barbara, Mock, Andreas, Hüllein, Jennifer, Fröhlich, Martina, Uhrig, Sebastian, Jahn, Arne, Rump, Andreas, Gieldon, Laura, Möhrmann, Lino, Hanf, Dorothea, Teleanu, Veronica, Heilig, Christoph E, Lipka, Daniel B, Allgäuer, Michael, Ruhnke, Leo, Laßmann, Andreas, Endris, Volker, Neumann, Olaf, Penzel, Roland, Beck, Katja, Richter, Daniela, Winter, Ulrike, Wolf, Stephan, Pfütze, Katrin, Geörg, Christina, Meißburger, Bettina, Buchhalter, Ivo, Augustin, Marinela, Aulitzky, Walter E, Hohenberger, Peter, Kroiss, Matthias, Schirmacher, Peter, Schlenk, Richard F, Keilholz, Ulrich, Klauschen, Frederick, Folprecht, Gunnar, Bauer, Sebastian, Siveke, Jens Thomas, Brandts, Christian H, Kindler, Thomas, Boerries, Melanie, Illert, Anna L, von Bubnoff, Nikolas, Jost, Philipp J, Spiekermann, Karsten, Bitzer, Michael, Schulze-Osthoff, Klaus, von Kalle, Christof, Klink, Barbara, Brors, Benedikt, Stenzinger, Albrecht, Schröck, Evelin, Hübschmann, Daniel, Weichert, Wilko, Glimm, Hanno, Fröhling, Stefan

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