Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes by Siepel, Adam, Bejerano, Gill, Pedersen, Jakob S, Hinrichs, Angie S, Hou, Minmei, Rosenbloom, Kate, Clawson, Hiram, Spieth, John, Hillier, Ladeana W, Richards, Stephen, Weinstock, George M, Wilson, Richard K, Gibbs, Richard A, Kent, W James, Miller, Webb, Haussler, David

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Alignathon: a competitive assessment of whole-genome alignment methods by Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Harris, Robert S, Fitzgerald, Stephen, Beal, Kathryn, Seledtsov, Igor, Molodtsov, Vladimir, Raney, Brian J, Clawson, Hiram, Kim, Jaebum, Kemena, Carsten, Chang, Jia-Ming, Erb, Ionas, Poliakov, Alexander, Hou, Minmei, Herrero, Javier, Kent, William James, Solovyev, Victor, Darling, Aaron E, Ma, Jian, Notredame, Cedric, Brudno, Michael, Dubchak, Inna, Haussler, David, Paten, Benedict

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28-way vertebrate alignment and conservation track in the UCSC Genome Browser by Miller, Webb, Rosenbloom, Kate, Hardison, Ross C, Hou, Minmei, Taylor, James, Raney, Brian, Burhans, Richard, King, David C, Baertsch, Robert, Blankenberg, Daniel, Kosakovsky Pond, Sergei L, Nekrutenko, Anton, Giardine, Belinda, Harris, Robert S, Tyekucheva, Svitlana, Diekhans, Mark, Pringle, Thomas H, Murphy, William J, Lesk, Arthur, Weinstock, George M, Lindblad-Toh, Kerstin, Gibbs, Richard A, Lander, Eric S, Siepel, Adam, Haussler, David, Kent, W James

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Mulan: multiple-sequence local alignment and visualization for studying function and evolution by Ovcharenko, Ivan, Loots, Gabriela G, Giardine, Belinda M, Hou, Minmei, Ma, Jian, Hardison, Ross C, Stubbs, Lisa, Miller, Webb

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Pico-inplace-inversions between human and chimpanzee by Hou, Minmei, Yao, Ping, Antonou, Angela, Johns, Mitrick A.

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Approximating the Spanning Star Forest Problem and Its Application to Genomic Sequence Alignment by Nguyen, C. Thach, Shen, Jian, Hou, Minmei, Sheng, Li, Miller, Webb, Zhang, Louxin

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HomologMiner: looking for homologous genomic groups in whole genomes by Hou, Minmei, Berman, Piotr, Hsu, Chih-Hao, Harris, Robert S.

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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome by Margulies, Elliott H, Cooper, Gregory M, Asimenos, George, Thomas, Daryl J, Dewey, Colin N, Siepel, Adam, Birney, Ewan, Keefe, Damian, Schwartz, Ariel S, Hou, Minmei, Taylor, James, Nikolaev, Sergey, Montoya-Burgos, Juan I, Löytynoja, Ari, Whelan, Simon, Pardi, Fabio, Massingham, Tim, Brown, James B, Bickel, Peter, Holmes, Ian, Mullikin, James C, Ureta-Vidal, Abel, Paten, Benedict, Stone, Eric A, Rosenbloom, Kate R, Kent, W James, Bouffard, Gerard G, Guan, Xiaobin, Hansen, Nancy F, Idol, Jacquelyn R, Maduro, Valerie V B, Maskeri, Baishali, McDowell, Jennifer C, Park, Morgan, Thomas, Pamela J, Young, Alice C, Blakesley, Robert W, Muzny, Donna M, Sodergren, Erica, Wheeler, David A, Worley, Kim C, Jiang, Huaiyang, Weinstock, George M, Gibbs, Richard A, Graves, Tina, Fulton, Robert, Mardis, Elaine R, Wilson, Richard K, Clamp, Michele, Cuff, James, Gnerre, Sante, Jaffe, David B, Chang, Jean L, Lindblad-Toh, Kerstin, Lander, Eric S, Hinrichs, Angie, Trumbower, Heather, Clawson, Hiram, Zweig, Ann, Kuhn, Robert M, Barber, Galt, Harte, Rachel, Karolchik, Donna, Field, Matthew A, Moore, Richard A, Matthewson, Carrie A, Schein, Jacqueline E, Marra, Marco A, Antonarakis, Stylianos E, Batzoglou, Serafim, Goldman, Nick, Hardison, Ross, Haussler, David, Miller, Webb, Pachter, Lior, Green, Eric D, Sidow, Arend

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APPROXIMATING THE SPANNING STAR FOREST PROBLEM AND ITS APPLICATION TO GENOMIC SEQUENCE ALIGNMENT by THACH NGUYEN, C, JIAN SHEN, MINMEI HOU, LI SHENG, MILLER, Webb, LOUXIN ZHANG

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