Circulating Tumor Cell–Based Messenger RNA Scoring System for Prognostication of Hepatocellular Carcinoma: Translating Tissue‐Based Messenger RNA Profiling Into a Noninvasive Setti...

by Lee, Yi‐Te, Sun, Na, Kim, Minhyung, Wang, Jasmine J., Tran, Benjamin V., Zhang, Ryan Y., Qi, Dongping, Zhang, Ceng, Chen, Pin‐Jung, Sadeghi, Saeed, Finn, Richard S., Saab, Sammy, Han, Steven‐Huy B., Busuttil, Ronald W., Pei, Renjun, Zhu, Yazhen, Tseng, Hsian‐Rong, You, Sungyong, Yang, Ju Dong, Agopian, Vatche G.
Published in Liver transplantation

Human liver single nucleus and single cell RNA sequencing identify a hepatocellular carcinoma-associated cell-type affecting survival

by Alvarez, Marcus, Benhammou, Jihane N, Darci-Maher, Nicholas, French, Samuel W, Han, Steven B, Sinsheimer, Janet S, Agopian, Vatche G, Pisegna, Joseph R, Pajukanta, Päivi
Published in Genome medicine

Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer

by Stackpole, Mary L, Zeng, Weihua, Li, Shuo, Liu, Chun-Chi, Zhou, Yonggang, He, Shanshan, Yeh, Angela, Wang, Ziye, Sun, Fengzhu, Li, Qingjiao, Yuan, Zuyang, Yildirim, Asli, Chen, Pin-Jung, Winograd, Paul, Tran, Benjamin, Lee, Yi-Te, Li, Paul Shize, Noor, Zorawar, Yokomizo, Megumi, Ahuja, Preeti, Zhu, Yazhen, Tseng, Hsian-Rong, Tomlinson, James S, Garon, Edward, French, Samuel, Magyar, Clara E, Dry, Sarah, Lajonchere, Clara, Geschwind, Daniel, Choi, Gina, Saab, Sammy, Alber, Frank, Wong, Wing Hung, Dubinett, Steven M, Aberle, Denise R, Agopian, Vatche, Han, Steven-Huy B, Ni, Xiaohui, Li, Wenyuan, Zhou, Xianghong Jasmine
Published in Nature communications

Peritoneal mucinous carcinomatosis : A possible explanation for an unusual laparoscopic appearance

by HAN, S.-H. B, KANEL, G, KORULA, J
Published in Digestive diseases and sciences

14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma

by Lee, Cheng-Han, Ou, Wen-Bin, Mariño-Enriquez, Adrian, Zhu, Meijun, Mayeda, Mark, Wang, Yuexiang, Guo, Xiangqian, Brunner, Alayne L., Amant, Frédéric, French, Christopher A., West, Robert B., McAlpine, Jessica N., Gilks, C. Blake, Yaffe, Michael B., Prentice, Leah M., McPherson, Andrew, Jones, Steven J. M., Marra, Marco A., Shah, Sohrab P., van de Rijn, Matt, Huntsman, David G., Cin, Paola Dal, Debiec-Rychter, Maria, Nucci, Marisa R., Fletcher, Jonathan A.
Published in Proceedings of the National Academy of Sciences - PNAS

Ligand-Independent Androgen Receptor Variants Derived from Splicing of Cryptic Exons Signify Hormone-Refractory Prostate Cancer

by RONG HU, DUNN, Thomas A, BOVA, G. Steven, JUN LUO, SHUANZENG WEI, ISHARWAL, Sumit, VELTRI, Robert W, HUMPHREYS, Elizabeth, HAN, Misop, PARTIN, Alan W, VESSELLA, Robert L, ISAACS, William B
Published in Cancer research (Chicago, Ill.)

Impact of Cancer on Health-Related Quality of Life of Older Americans

by Reeve, Bryce B., Potosky, Arnold L., Smith, Ashley Wilder, Han, Paul K., Hays, Ron D., Davis, William W., Arora, Neeraj K., Haffer, Samuel C., Clauser, Steven B.
Published in JNCI : Journal of the National Cancer Institute

Integrated genomic and molecular characterization of cervical cancer

by Saller, Charles, Tarvin, Katherine, Yau, Christina, Robertson, A. Gordon, Mungall, Karen, Lim, Lynette, Mar, Richard, Clarke, Amanda, Tam, Angela, Dhalla, Noreen, Carlsen, Rebecca, Holt, Robert A, Jones, Steven J. M, Hadjipanayis, Angela, Seidman, Jonathan, Rabeno, Brenda, Huelsenbeck-Dill, Lori, Iacocca, Mary, Petrelli, Nicholas, Adebamowo, Sally N, Adebamowo, Clement, Shelton, Candace, Crain, Daniel, Mallery, David, Curley, Erin, Gardner, Johanna, Shelton, Troy, Wu, Ye, Birrer, Michael, Miller, Christopher A, Fulton, Robert S, Appelbaum, Elizabeth L, Rader, Janet S, Behmaram, Behnaz, Bradley, William, Wrangle, John, Schultz, Nikolaus, Ladanyi, Marc, Felau, Ina, Zenklusen, Jean C, Demchok, John A, Sheth, Margi, Ferguson, Martin L, Tarnuzzer, Roy, Zhang, Jiashan, Wang, Zhining, Olaniyan, Olayinka, Sofia, Heidi J, Chen, Zhong, Saleh, Anthony D, Cheng, Hui, Parfitt, Jeremy, Albert, Monique, Sekhon, Harman, Gilbert, Sebastien, Myers, Jerome, Tucker, Kelinda, Lester, Jenny, Wan, Yunhu, Miller, Judy, Cherniack, Andrew D, Meyerson, Matthew, Voet, Doug, Kim, Jaegil, Lawrence, Michael S, Gehlenborg, Nils, Lin, Pei, Gabriel, Stacey B, Schumacher, Steven E, Leraas, Kristen M, Gastier-Foster, Julie M, Danilova, Ludmila, Salvesen, Helga B, Ju, Zhenlin, Diao, Lixia, Zhao, Hao, Ryan, Michael C, Averett Byers, Lauren, Yuan, Yuan, Bristow, Christopher A, Shaw, Kenna R. Mills, Radenbaugh, Amie, Chalise, Prabhakar, Godwin, Andrew K, Auman, J. Todd, Perou, Charles M, Veluvolu, Umadevi, Rathmell, W. Kimryn, Simons, Janae V, Mose, Lisle E, Shi, Yan, Thorne, Leigh B, Walker, Joan, Moore, Kathleen, McMeekin, Scott, Nelson, Tina, Bhargava, Rohit, Bootwalla, Moiz S, Triche, Timothy, Jr, Agnew, Kathy J
Published in Nature (London)

Methylation of Cancer-Stem-Cell-Associated Wnt Target Genes Predicts Poor Prognosis in Colorectal Cancer Patients

by de Sousa E Melo, Felipe, Colak, Selcuk, Buikhuisen, Joyce, Koster, Jan, Cameron, Kate, de Jong, Joan H., Tuynman, Jurriaan B., Prasetyanti, Pramudita R., Fessler, Evelyn, van den Bergh, Saskia P., Rodermond, Hans, Dekker, Evelien, van der Loos, Chris M., Pals, Steven T., van de Vijver, Marc J., Versteeg, Rogier, Richel, Dick J., Vermeulen, Louis, Medema, Jan Paul
Published in Cell stem cell

The repertoire of mutational signatures in human cancer

by Alexandrov, Ludmil B, Kim, Jaegil, Haradhvala, Nicholas J, Huang, Mi Ni, Tian Ng, Alvin Wei, Wu, Yang, Boot, Arnoud, Covington, Kyle R, Gordenin, Dmitry A, Bergstrom, Erik N, Islam, S M Ashiqul, Lopez-Bigas, Nuria, Klimczak, Leszek J, McPherson, John R, Morganella, Sandro, Sabarinathan, Radhakrishnan, Wheeler, David A, Mustonen, Ville, Getz, Gad, Rozen, Steven G, Stratton, Michael R
Published in Nature (London)

Pan-cancer analysis of whole genomes

by Campbell, Peter J, Getz, Gad, Korbel, Jan O, Stuart, Joshua M, Jennings, Jennifer L, Stein, Lincoln D, Perry, Marc D
Published in Nature (London)

The evolutionary history of 2,658 cancers

by Gerstung, Moritz, Jolly, Clemency, Leshchiner, Ignaty, Dentro, Stefan C, Gonzalez, Santiago, Rosebrock, Daniel, Mitchell, Thomas J, Rubanova, Yulia, Anur, Pavana, Yu, Kaixian, Tarabichi, Maxime, Deshwar, Amit, Wintersinger, Jeff, Kleinheinz, Kortine, Vázquez-García, Ignacio, Haase, Kerstin, Jerman, Lara, Sengupta, Subhajit, Macintyre, Geoff, Malikic, Salem, Donmez, Nilgun, Livitz, Dimitri G, Cmero, Marek, Demeulemeester, Jonas, Schumacher, Steven, Fan, Yu, Yao, Xiaotong, Lee, Juhee, Schlesner, Matthias, Boutros, Paul C, Bowtell, David D, Zhu, Hongtu, Getz, Gad, Imielinski, Marcin, Beroukhim, Rameen, Sahinalp, S Cenk, Ji, Yuan, Peifer, Martin, Markowetz, Florian, Mustonen, Ville, Yuan, Ke, Wang, Wenyi, Morris, Quaid D, Spellman, Paul T, Wedge, David C, Van Loo, Peter
Published in Nature (London)

Patterns of somatic structural variation in human cancer genomes

by Li, Yilong, Roberts, Nicola D, Wala, Jeremiah A, Shapira, Ofer, Schumacher, Steven E, Kumar, Kiran, Khurana, Ekta, Waszak, Sebastian, Korbel, Jan O, Haber, James E, Imielinski, Marcin, Weischenfeldt, Joachim, Beroukhim, Rameen, Campbell, Peter J
Published in Nature (London)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

by Rheinbay, Esther, Nielsen, Morten Muhlig, Abascal, Federico, Wala, Jeremiah A, Shapira, Ofer, Tiao, Grace, Hornshøj, Henrik, Hess, Julian M, Juul, Randi Istrup, Lin, Ziao, Feuerbach, Lars, Sabarinathan, Radhakrishnan, Madsen, Tobias, Kim, Jaegil, Mularoni, Loris, Shuai, Shimin, Lanzós, Andrés, Herrmann, Carl, Maruvka, Yosef E, Shen, Ciyue, Amin, Samirkumar B, Bandopadhayay, Pratiti, Bertl, Johanna, Boroevich, Keith A, Busanovich, John, Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Craft, David, Dhingra, Priyanka, Diamanti, Klev, Fonseca, Nuno A, Gonzalez-Perez, Abel, Guo, Qianyun, Hamilton, Mark P, Haradhvala, Nicholas J, Hong, Chen, Isaev, Keren, Johnson, Todd A, Juul, Malene, Kahles, Andre, Kahraman, Abdullah, Kim, Youngwook, Komorowski, Jan, Kumar, Kiran, Kumar, Sushant, Lee, Donghoon, Lehmann, Kjong-Van, Li, Yilong, Liu, Eric Minwei, Lochovsky, Lucas, Park, Keunchil, Pich, Oriol, Roberts, Nicola D, Saksena, Gordon, Schumacher, Steven E, Sidiropoulos, Nikos, Sieverling, Lina, Sinnott-Armstrong, Nasa, Stewart, Chip, Tamborero, David, Tubio, Jose M C, Umer, Husen M, Uusküla-Reimand, Liis, Wadelius, Claes, Wadi, Lina, Yao, Xiaotong, Zhang, Cheng-Zhong, Zhang, Jing, Haber, James E, Hobolth, Asger, Imielinski, Marcin, Kellis, Manolis, Lawrence, Michael S, von Mering, Christian, Nakagawa, Hidewaki, Raphael, Benjamin J, Rubin, Mark A, Sander, Chris, Stein, Lincoln D, Stuart, Joshua M, Tsunoda, Tatsuhiko, Wheeler, David A, Johnson, Rory, Reimand, Jüri, Gerstein, Mark, Khurana, Ekta, Campbell, Peter J, López-Bigas, Núria, Weischenfeldt, Joachim, Beroukhim, Rameen, Martincorena, Iñigo, Pedersen, Jakob Skou, Getz, Gad
Published in Nature (London)

Genomic basis for RNA alterations in cancer

by Calabrese, Claudia, Davidson, Natalie R, Demircioğlu, Deniz, Fonseca, Nuno A, He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M, Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D, Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A, Hou, Yong, Huska, Matthew R, Kilpinen, Helena, Korbel, Jan O, Marin, Maximillian G, Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G, Su, Hong, Tan, Patrick, Waszak, Sebastian M, Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J, Meyerson, Matthew, Ouellette, B F Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N, Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F, Stegle, Oliver, Zhang, Zemin
Published in Nature (London)

Characterization of HPV and host genome interactions in primary head and neck cancers

by Parfenov, Michael, Pedamallu, Chandra Sekhar, Gehlenborg, Nils, Freeman, Samuel S., Danilova, Ludmila, Bristow, Christopher A., Lee, Semin, Hadjipanayis, Angela G., Ivanova, Elena V., Wilkerson, Matthew D., Protopopov, Alexei, Yang, Lixing, Seth, Sahil, Song, Xingzhi, Tang, Jiabin, Ren, Xiaojia, Zhang, Jianhua, Pantazi, Angeliki, Santoso, Netty, Xu, Andrew W., Mahadeshwar, Harshad, Wheeler, David A., Haddad, Robert I., Jung, Joonil, Ojesina, Akinyemi I., Issaeva, Natalia, Yarbrough, Wendell G., Hayes, D. Neil, Grandis, Jennifer R., K. El-Naggar, Adel, Meyerson, Matthew, Park, Peter J., Chin, Lynda, Seidman, J. G., Hammerman, Peter S., Kucherlapati, Raju
Published in Proceedings of the National Academy of Sciences - PNAS

Focal adhesion kinasetargeting using in vivo short interfering RNA delivery in neutral liposomes for ovarian carcinoma therapy

by HALDER, Jyotsnabaran, KAMAT, Aparna A, GERSHENSON, David M, SCHMANDT, Rosemarie, COLE, Steven W, LOPEZ-BERESTEIN, Gabriel, SOOD, Anil K, LANDEN, Charles N, HAN, Liz Y, LUTGENDORF, Susan K, LIN, Yvonne G, MERRITT, William M, JENNINGS, Nicholas B, CHAVEZ-REYES, Arturo, COLEMAN, Robert L
Published in Clinical cancer research

Spatial mapping of mitochondrial networks and bioenergetics in lung cancer

by Han, Mingqi, Bushong, Eric A, Segawa, Mayuko, Tiard, Alexandre, Wong, Alex, Brady, Morgan R, Momcilovic, Milica, Wolf, Dane M, Zhang, Ralph, Petcherski, Anton, Madany, Matthew, Xu, Shili, Lee, Jason T, Poyurovsky, Masha V, Olszewski, Kellen, Holloway, Travis, Gomez, Adrian, John, Maie St, Dubinett, Steven M, Koehler, Carla M, Shirihai, Orian S, Stiles, Linsey, Lisberg, Aaron, Soatto, Stefano, Sadeghi, Saman, Ellisman, Mark H, Shackelford, David B
Published in Nature (London)

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

by Jiao, Wei, Atwal, Gurnit, Polak, Paz, Karlic, Rosa, Cuppen, Edwin, Danyi, Alexandra, de Ridder, Jeroen, van Herpen, Carla, Lolkema, Martijn P, Steeghs, Neeltje, Getz, Gad, Morris, Quaid D, Stein, Lincoln D
Published in Nature communications

Urinary Levels of Cigarette Smoke Constituent Metabolites Are Prospectively Associated with Lung Cancer Development in Smokers

by YUAN, Jian-Min, GAO, Yu-Tang, SHAOMEI HAN, NELSON, Heather H, YU, Mirni C, HECHT, Stephen S, MURPHY, Sharon E, CARMELLA, Steven G, RENWEI WANG, YAN ZHONG, MOY, Kristin A, DAVIS, Andrew B, LI TAO, MENGLAN CHEN
Published in Cancer research (Chicago, Ill.)