miRNA profiling of human naive CD4 T cells links miR‐34c‐5p to cell activation and HIV replication by Amaral, Andreia J, Andrade, Jorge, Foxall, Russell B, Matoso, Paula, Matos, Ana M, Soares, Rui S, Rocha, Cheila, Ramos, Christian G, Tendeiro, Rita, Serra‐Caetano, Ana, Guerra‐Assunção, José A, Santa‐Marta, Mariana, Gonçalves, João, Gama‐Carvalho, Margarida, Sousa, Ana E

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Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit by Myers, Chloe E., Houldcroft, Charlotte J., Roy, Sunando, Margetts, Ben K., Best, Timothy, Venturini, Cristina, Guerra-Assunção, Jose A., Williams, Charlotte A., Williams, Rachel, Dunn, Helen, Hartley, John C., Rao, Kanchan, Rolfe, Kathryn J., Breuer, Judith

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Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine by Beck, Stephan, Berner, Alison M., Bignell, Graham, Bond, Maggie, Callanan, Martin J., Chervova, Olga, Conde, Lucia, Corpas, Manuel, Ecker, Simone, Elliott, Hannah R., Fioramonti, Silvana A., Flanagan, Adrienne M., Gaentzsch, Ricarda, Graham, David, Gribbin, Deirdre, Guerra-Assunção, José Afonso, Hamoudi, Rifat, Harding, Vincent, Harrison, Paul L., Herrero, Javier, Hofmann, Jana, Jones, Erica, Khan, Saif, Kaye, Jane, Kerr, Polly, Libertini, Emanuele, Marks, Lauren, McCormack, Laura, Moghul, Ismail, Pontikos, Nikolas, Rajanayagam, Sharmini, Rana, Kirti, Semega-Janneh, Momodou, Smith, Colin P., Strom, Louise, Umur, Sevgi, Webster, Amy P., Williams, Elizabeth H., Wint, Karen, Wood, John N.

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Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia by Camps, Carme, Saini, Harpreet K, Mole, David R, Choudhry, Hani, Reczko, Martin, Guerra-Assunção, José Afonso, Tian, Ya-Min, Buffa, Francesca M, Harris, Adrian L, Hatzigeorgiou, Artemis G, Enright, Anton J, Ragoussis, Jiannis

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The zebrafish reference genome sequence and its relationship to the human genome by Clark, Matthew D, Torroja, Carlos F, Torrance, James, Humphray, Sean, McLaren, Karen, Matthews, Lucy, McLaren, Stuart, Sealy, Ian, Caccamo, Mario, Churcher, Carol, Rauch, Gerd-Jörg, White, Simon, Quintais, Leonor T, Guerra-Assunção, José A, Gu, Yong, Yen, Jennifer, Vogel, Jan-Hinnerk, Redmond, Seth, Banerjee, Ruby, Chi, Jianxiang, Fu, Beiyuan, Langley, Elizabeth, Maguire, Sean F, Kenyon, Emma, Sehra, Harminder, Trevanion, Stephen, Quail, Mike, Willey, Dave, Burton, John, Sims, Sarah, McLay, Kirsten, Plumb, Bob, Davis, Joy, Clark, Richard, Riddle, Clare, Elliot, David, Eliott, David, Harden, Glenn, Mortimore, Beverley, Mortimer, Beverly, Heath, Paul, Tracey, Alan, Corby, Nicole, Dunn, Matthew, Smith, Michelle, Howden, Philip, Barker, Nicholas, Harley, Joanna, Holt, Karen, Panagiotidis, Georgios, Henderson, Carl, Gordon, Daria, Wright, Deborah, Dyer, Lauren, Leung, Kenric, Gilderthorp, Ruth, Griffiths, Coline, Manthravadi, Deepa, Murnane, Clare, Humphries, Matthew, Sycamore, Neil, Barker, Darren, Wallis, Justene, Babbage, Anne, Hammond, Sian, Martin, Sancha, Matthews, Nicholas, Woodmansey, Rebecca, Cooper, James D, Tromans, Anthony, Skuce, Carl, Andrews, Robert, Garnett, Jane, Fosker, Nigel, Hall, Rebekah, Garner, Patrick, Kelly, Daniel, Bird, Christine, Gehring, Ines, Berger, Andrea, Dooley, Christopher M, Eser, Cigdem, Geiger, Horst, Geisler, Maria, Kirn, Anette, Konantz, Judith, Oberländer, Martina, Raddatz, Günter, Osoegawa, Kazutoyo, Zhu, Baoli, Rapp, Amanda, Widaa, Sara, Schuster, Stephan C, Carter, Nigel P, Ning, Zemin, Enright, Anton, Lee, Charles, de Jong, Pieter J, Hubbard, Tim J P, Roest Crollius, Hugues

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Large-scale analysis of microRNA evolution by Guerra-Assunção, José Afonso, Enright, Anton J

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MapMi: automated mapping of microRNA loci by Guerra-Assunção, José Afonso, Enright, Anton J

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mi RNA profiling of human naive CD 4 T cells links miR‐34c‐5p to cell activation and HIV replication by Amaral, Andreia J, Andrade, Jorge, Foxall, Russell B, Matoso, Paula, Matos, Ana M, Soares, Rui S, Rocha, Cheila, Ramos, Christian G, Tendeiro, Rita, Serra‐Caetano, Ana, Guerra‐Assunção, José A, Santa‐Marta, Mariana, Gonçalves, João, Gama‐Carvalho, Margarida, Sousa, Ana E

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Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection by Illingworth, Christopher J. R, Guerra-Assuncao, Jose A, Gregg, Samuel, Charles, Oscar, Pang, Juanita, Roy, Sunando, Abdelnabi, Rana, Neyts, Johan, Breuer, Judith

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Synthetic Lethal Screening Identifies CHK1 Inhibition As an Exploitable Vulnerability in EZH2 Deficient T-ALL by Leon, Theresa E., Rapoz-D'Silva, Tanya, Rahman, Sunniyat, Magnussen, Michael, Farah, Nadine, Guerra-Assunção, Jose A., Gupta, Rajeev, Nacheva, Elisabeth P., Herrero, Javier, Linch, David C., Mansour, Marc R.

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Blood transcriptional biomarkers of acute viral infection for detection of pre-symptomatic SARS-CoV-2 infection: a nested, case-control diagnostic accuracy study by Rosenheim, Joshua, Chandran, Aneesh, Guerra-Assuncao, Jose A, Pollara, Gabriele, Whelan, Matthew, Altmann, Daniel M, Boyton, Rosemary J, Maini, Mala K, McKnight, Aine, Lambourne, Jonathan, Cutino-Moguel, Teresa, Manisty, Charlotte, Moon, James C, Chain, Benjamin M, Noursadeghi, Mahdad, Abbass, Hakam, Alldis, Zoe, Altmann, Daniel M, Amin, Oliver E, Andiapen, Mervyn, Augusto, João B, Baca, Georgiana L, Bailey, Sasha NL, Bhuva, Anish N, Bowles, Ruth, Bracken, Olivia V, O'Brien, Ben, Brooks, Tim, Bullock, Natalie, Butler, David K, Captur, Gabriella, Chan, Carmen, Chandran, Aneesh, Collier, David, Couto de Sousa, Jorge, Couto-Parada, Xose, Cutino-Moguel, Teresa, Douglas, Brooke, Di Genova, Cecilia, Diniz, Mariana O, Ellis, Anaya, Feehan, Karen, Fontana, Marianna, Forooghi, Nasim, Gaier, Celia, Gibbons, Joseph M, Gilroy, Derek, Hamblin, Matt, Harker, Gabrielle, Hewson, Jacqueline, Hingorani, Aroon D, Howes, Lee, Hughes, Rebecca, Jardim, Victor, Jones, Jessica, Jones, Meleri, Joy, George, Kapil, Vikas, Kurdi, Hibba, Lambourne, Jonathan, Lin, Kai-Min, Louth, Sarah, Maini, Mala K, Manisty, Charlotte, Menacho, Katia, Mfuko, Celina, Moon, Christopher, Moon, James C, Munoz Sandoval, Diana, Murray, Sam M, Noursadeghi, Mahdad, Otter, Ashley, Pade, Corinna, Palma, Susana, Parker, Ruth, Patel, Kush, Pawarova, Babita, Petersen, Steffen E, Piniera, Brian, Pope, Daniel, Prossora, Maria, Rannigan, Lisa, Rapala, Alicja, Richards, Amy, Sambile, Genine, Schmidt, Nathalie M, Semper, Amanda, Seraphim, Andreas, Sugimoto, Michelle, Swadling, Leo, Taylor, Stephen, Thomas, Stephen, Thornton, George D, Treibel, Thomas A, Veerapen, Jessry, Vijayakumar, Mohit, Welch, Sophie, Wodehouse, Theresa, Wynne, Lucinda, Zahedi, Dan

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A robust SNP barcode for typing Mycobacterium tuberculosis complex strains by Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G

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Mouse genomic variation and its effect on phenotypes and gene regulation by KEANE, Thomas M, GOODSTADT, Leo, FURLOTTE, Nicholas A, ESKIN, Eleazar, NELLAKER, Christoffer, WHITLEY, Helen, CLEAK, James, JANOWITZ, Deborah, HERNANDEZ-PLIEGO, Polinka, EDWARD, Andrew, GRANT BELGARD, T, OLIVER, Peter L, DANECEKL, Petr, MCINTYRE, Rebecca E, BHOMRA, Amarjit, NICOD, Jérôme, GAN, Xiangchao, WEI YUAN, DER WEYDEN, Louise Van, STEWARD, Charles A, BALA, Sendu, STALKER, Jim, MOTT, Richard, WHITE, Michael A, DURBIN, Richard, JACKSON, Ian J, CZECHANSKI, Anne, AFONSO GUERRA-ASSUNCAO, Jose, RAE DONAHUE, Leah, REINHOLDT, Laura G, PAYSEUR, Bret A, PONTING, Chris P, BIRNEY, Ewan, FLINT, Jonathan, WONG, Kim, ADAMS, David J, YALCIN, Binnaz, HEGER, Andreas, AGAM, Avigail, SLATER, Guy, GOODSON, Martin

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Cathepsin-L can resist lysis by human serum in Trypanosoma brucei brucei by Alsford, Sam, Currier, Rachel B, Guerra-Assunção, José Afonso, Clark, Taane G, Horn, David

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Extent, causes, and consequences of small RNA expression variation in human adipose tissue by Parts, Leopold, Hedman, Åsa K, Keildson, Sarah, Knights, Andrew J, Abreu-Goodger, Cei, van de Bunt, Martijn, Guerra-Assunção, José Afonso, Bartonicek, Nenad, van Dongen, Stijn, Mägi, Reedik, Nisbet, James, Barrett, Amy, Rantalainen, Mattias, Nica, Alexandra C, Quail, Michael A, Small, Kerrin S, Glass, Daniel, Enright, Anton J, Winn, John, Deloukas, Panos, Dermitzakis, Emmanouil T, McCarthy, Mark I, Spector, Timothy D, Durbin, Richard, Lindgren, Cecilia M

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The Personal Genome Project-UK, an open access resource of human multi-omics data by Chervova, Olga, Conde, Lucia, Guerra-Assunção, José Afonso, Moghul, Ismail, Webster, Amy P, Berner, Alison, Larose Cadieux, Elizabeth, Tian, Yuan, Voloshin, Vitaly, Jesus, Tiago F, Hamoudi, Rifat, Herrero, Javier, Beck, Stephan

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GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline by Guerra-Assunção, José Afonso, Conde, Lucia, Moghul, Ismail, Webster, Amy P., Ecker, Simone, Chervova, Olga, Chatzipantsiou, Christina, Prieto, Pablo P., Beck, Stephan, Herrero, Javier

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The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study by Boshier, Florencia A.T., Venturini, Cristina, Stirrup, Oliver, Guerra-Assunção, José Afonso, Alcolea-Medina, Adela, Becket, Angela H., Byott, Matthew, Charalampous, Themoula, Filipe, Ana da Silva, Frampton, Dan, Glaysher, Sharon, Khan, Tabassum, Kulasegara-Shylini, Raghavendran, Kele, Beatrix, Monahan, Irene M., Mollett, Guy, Parker, Matthew, Pelosi, Emanuela, Randell, Paul, Roy, Sunando, Taylor, Joshua F., Weller, Sophie J., Wilson-Davies, Eleri, Wade, Phillip, Williams, Rachel, Copas, Andrew J., Cutino-Moguel, Teresa, Freemantle, Nick, Hayward, Andrew C., Holmes, Alison, Hughes, Joseph, Mahungu, Tabitha W., Nebbia, Gaia, Nastouli, Eleni, Partridge, David G., Pope, Cassie F., Price, James R., Robson, Samuel C., Saeed, Kordo, Shin, Gee Yen, de Silva, Thushan I., Snell, Luke B., Thomson, Emma C., Witney, Adam A., Breuer, Judith

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Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalenc... by Guerra-Assunção, José Afonso, Houben, Rein M. G. J., Crampin, Amelia C., Mzembe, Themba, Mallard, Kim, Coll, Francesc, Khan, Palwasha, Banda, Louis, Chiwaya, Arthur, Pereira, Rui P. A., McNerney, Ruth, Harris, David, Parkhill, Julian, Clark, Taane G., Glynn, Judith R.

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Meta-analysis of tumor- and T cell-intrinsic mechanisms of sensitization to checkpoint inhibition by Litchfield, Kevin, Reading, James L., Puttick, Clare, Thakkar, Krupa, Abbosh, Chris, Bentham, Robert, Watkins, Thomas B.K., Rosenthal, Rachel, Biswas, Dhruva, Rowan, Andrew, Lim, Emilia, Al Bakir, Maise, Turati, Virginia, Guerra-Assunção, José Afonso, Conde, Lucia, Furness, Andrew J.S., Saini, Sunil Kumar, Hadrup, Sine R., Herrero, Javier, Lee, Se-Hoon, Van Loo, Peter, Enver, Tariq, Larkin, James, Hellmann, Matthew D., Turajlic, Samra, Quezada, Sergio A., McGranahan, Nicholas, Swanton, Charles

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