Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma

by Hu, Yingwei, Pan, Jianbo, Shah, Punit, Ao, Minghui, Thomas, Stefani N., Liu, Yang, Chen, Lijun, Schnaubelt, Michael, Clark, David J., Rodriguez, Henry, Boja, Emily S., Hiltke, Tara, Kinsinger, Christopher R., Rodland, Karin D., Li, Qing Kay, Qian, Jiang, Zhang, Zhen, Chan, Daniel W., Zhang, Hui, Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Zhang, Bing, Mani, D.R., Liebler, Daniel C., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Shih, Ie-Ming, Bavarva, Jasmin, McDermott, Jason E., Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Ding, Li, Hannick, Linda, Zimmerman, Lisa J., Watson, Mark, Thiagarajan, Mathangi, Ellis, Matthew J.C., Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Smith, Richard D., Rivers, Robert C., Slebos, Robert J.C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Liu, Tao, Chen, Xian, Zhao, Yingming, Wang, Yue, Shi, Zhiao
Published in Cell reports (Cambridge)

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

by Vasaikar, Suhas, Huang, Chen, Wang, Xiaojing, Petyuk, Vladislav A., Savage, Sara R., Wen, Bo, Dou, Yongchao, Zhang, Yun, Shi, Zhiao, Arshad, Osama A., Gritsenko, Marina A., Zimmerman, Lisa J., McDermott, Jason E., Clauss, Therese R., Moore, Ronald J., Zhao, Rui, Monroe, Matthew E., Wang, Yi-Ting, Chambers, Matthew C., Slebos, Robbert J.C., Lau, Ken S., Mo, Qianxing, Ding, Li, Ellis, Matthew, Thiagarajan, Mathangi, Kinsinger, Christopher R., Rodriguez, Henry, Smith, Richard D., Rodland, Karin D., Liebler, Daniel C., Liu, Tao, Zhang, Bing, Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Mani, D.R., Chan, Daniel W., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Boja, Emily S., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Zhang, Hui, Shih, Ie-Ming, Bavarva, Jasmin, Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Hannick, Linda, Watson, Mark, Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Rivers, Robert C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Hiltke, Tara, Chen, Xian, Zhao, Yingming, Wang, Yue, Zhang, Zhen
Published in Cell

Proteogenomic and metabolomic characterization of human glioblastoma

by Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Rykunov, Dmitry, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Wendl, Michael C., Caravan, Wagma, Ji, Jiayi, Petyuk, Vladislav A., Moon, Jamie, Moore, Ronald J., Krek, Azra, Zhu, Houxiang, McMichael, Joshua F., Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Zink, Erika, Bloodsworth, Kent J., Satpathy, Shankha, Boca, Simina M., Chen, Feng, Ketchum, Karen A., Boja, Emily S., Hiltke, Tara, Mani, D.R., Chen, Xi S., Li, Qing Kay, Kim, Albert H., Fenyö, David, Mesri, Mehdi, Resnick, Adam C., Wang, Pei, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, Ding, Li, Bauer, Thomas, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna P., Carr, Steven A., Chan, Daniel W., Charamut, Alyssa, Chesla, David, Chowdhury, Shrabanti, Cieślik, Marcin P., Culpepper, Houston, Demir, Emek, Dhir, Rajiv, Duffy, Elizabeth, Edwards, Robert, Gabriel, Stacey, Gabrovski, Nikolay, Garofano, Luciano, Gillette, Michael A., Hannick, Linda I., Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Huang, Chen, Jaehnig, Eric, Ji, Nan, Jones, Corbin D., Kaspera, Wojciech, Lei, Jonathan, Li, Kai, Liu, Hongwei, Lubínski, Jan, Malc, Ewa, Malovannaya, Anna, McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Modugno, Francesmary, Ozbek, Umut, Paulovich, Amanda G., Piehowski, Paul D., Polonskaya, Larisa, Pruetz, Barbara, Ramkissoon, Shakti, Riggins, Gregory, Stawicki, Jakub, Tabor, Dave, Tansil, Darlene, Traer, Elie, Vatanian, Negin, Webster, Alex, Wen, Bo, Whiteaker, Jeffrey R., Zhang, Liwei, Zhao, Grace
Published in Cancer cell

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

by Savage, Sara R., Eguez, Rodrigo Vargas, Li, Yize, Jaehnig, Eric J., Cieślik, Marcin, Chang, Hui-Yin, Li, Kai, Li, Qing Kay, Clark, David J., Hu, Yingwei, Cao, Liwei, Wang, Yuefan, Cho, Kyung-Cho, Liao, Yuxing, Anurag, Meenakshi, Ji, Jiayi, Zhou, Daniel Cui, Carr, Steven A., Zhang, Zhen, Chen, Xi S., Pico, Alexander R., Kinsinger, Christopher R., Robles, Ana I., An, Eunkyung, Hiltke, Tara, Mesri, Mehdi, Weaver, Alissa M., Sikora, Andrew G., Wierzbicka, Małgorzata, Wiznerowicz, Maciej, Satpathy, Shankha, Gillette, Michael A., Miles, George, Ellis, Matthew J., Omenn, Gilbert S., Boja, Emily S., Dhanasekaran, Saravana M., Agarwal, Anupriya, Avanessian, Shayan C., Bathe, Oliver F., Birger, Chet, Birrer, Michael J., Bocik, William E., Borate, Uma, Borucki, Melissa, Cai, Shuang, Charamut, Alyssa, Chen, Lin S., Chowdhury, Shrabanti, Clauser, Karl R., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Domagalski, Marcin J., Dyer, Maureen, Edwards, Nathan J., Ermakova, Tatiana S., Francis, Alicia, Goldthwaite, Charles A., Hannick, Linda I., Hayes, David N., Heiman, David, Jewell, Scott D., Jones, Corbin D., Krek, Azra, Liu, Tao, Ma, Weiping, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Marrero-Oliveras, Annette, McGee, John, Mieczkowski, Piotr, Newton, Chelsea J., Ozbek, Umut, Payne, Samuel H., Pazardzhikliev, Dimitar Dimitrov, Petralia, Francesca, Piehowski, Paul D., Polonskaya, Larisa, Ponomareva, Elena V., Qu, Ning, Ramkissoon, Shakti, Reva, Boris, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rodland, Karin, Shi, Yan, Shutack, Yvonne, Sokoll, Lori J., Stein, Stephen E., Szopa, Wojciech, Tyner, Jeffrey, Vasilev, Lyubomir Valkov, Whiteaker, Jeffrey R., Wu, Yige, Yi, Xinpei, Zakhartsev, Yuriy, Zhao, Grace
Published in Cancer cell

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

by Pan, Jianbo, Hu, Yingwei, Krek, Azra, Li, Yize, Chen, Lin S., Vasaikar, Suhas, Wu, Yige, Chowdhury, Shrabanti, Wyczalkowski, Matthew A., Kong, Andy, Sethuraman, Sunantha, Avtonomov, Dmitry M., Colaprico, Antonio, Cao, Song, Cho, Kyung-Cho, Kalayci, Selim, Ma, Shiyong, Ruggles, Kelly, Kawaler, Emily, Wen, Bo, Chen, Feng, Edwards, Nathan, Pierorazio, Phillip M., Pavlovich, Christian P., Brominski, Gabriel, Hsieh, James J., Lubinski, Jan, Wiznerowicz, Maciej, Kinsinger, Christopher R., Thiagarajan, Mathangi, Mesri, Mehdi, Hiltke, Tara, Ding, Li, Zhang, Zhen, Omenn, Gilbert S., Cieslik, Marcin, Nesvizhskii, Alexey I., Zhang, Hui, Hashimi, Abdul Samad, Charamut, Alyssa, Druker, Brian J., Tognon, Cristina, Mani, D.R., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Wheeler, David, Chan, Doug, Demir, Emek, Wilson, George D., Liu, Hongwei, Zhou, Hua, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, Chen, Jin, Ketchum, Karen A., Rodland, Karin D., Krug, Karsten, Holloway, Kimberly, Sokoll, Lori J., Cornwell, MacIntosh, Loriaux, Marc, Anderson, Matthew, Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Smith, Michael, Khan, Munziba, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Tignor, Nicole, Piehowski, Paul, McGarvey, Peter B., Hariharan, Pushpa, Gao, Qingsong, Thangudu, Ratna R., Montgomery, Rebecca, Bremner, Ross, Liu, Ruiyang, Hong, Runyu, Payne, Samuel H., Patel, Shalin, Satpathy, Shankha, Davies, Sherri R., Patil, Snehal, Carter, Sonya, Gabriel, Stacey, Thomas, Stefani N., Carr, Steven A., Skelly, Tara, Borate, Uma, Maruvka, Yosef, Li, Zhi
Published in Cell

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

by Clark, David J., Petralia, Francesca, Pan, Jianbo, Hu, Yingwei, Lih, Tung-Shing M., Chang, Hui-Yin, Ma, Weiping, Krek, Azra, Li, Yize, Ozbek, Umut, Wu, Yige, Chowdhury, Shrabanti, Wyczalkowski, Matthew A., Schnaubelt, Michael, Avtonomov, Dmitry M., Kalayci, Selim, Ma, Shiyong, Ruggles, Kelly, Gümüş, Zeynep H., Kawaler, Emily, Edwards, Nathan, Chen, Xi Steven, Antczak, Andrzej, Omelchenko, Tatiana, Kinsinger, Christopher R., Thiagarajan, Mathangi, Mesri, Mehdi, Robles, Ana I., Qian, Jiang, Fenyö, David, Zhang, Bing, Zhang, Zhen, Cieslik, Marcin, Chan, Daniel W., Nesvizhskii, Alexey I., Hashimi, Abdul Samad, Charamut, Alyssa, Druker, Brian J., Tognon, Cristina, Mani, D.R., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Wheeler, David, Chan, Doug, Demir, Emek, Modugno, Francesmary, Getz, Gaddy, Wilson, George D., Liu, Hongwei, Zhou, Hua, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, Chen, Jin, Ketchum, Karen A., Rodland, Karin D., Krug, Karsten, Holloway, Kimberly, Sokoll, Lori J., Cornwell, MacIntosh, Loriaux, Marc, Anderson, Matthew, Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Smith, Michael, Khan, Munziba, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Tignor, Nicole, Grady, Pamela, Piehowski, Paul, McGarvey, Peter B., Hariharan, Pushpa, Gao, Qingsong, Thangudu, Ratna R., Montgomery, Rebecca, Bremner, Ross, Liu, Ruiyang, Hong, Runyu, Payne, Samuel H., Patel, Shalin, Satpathy, Shankha, Davies, Sherri R., Patil, Snehal, Carter, Sonya, Gabriel, Stacey, Thomas, Stefani N., Carr, Steven A., Skelly, Tara, Borate, Uma, Maruvka, Yosef, Li, Zhi
Published in Cell