Re-purposing 16S rRNA gene sequence data from within case paired tumor biopsy and tumor-adjacent biopsy or fecal samples to identify microbial markers for colorectal cancer

by Shah, Manasi S, DeSantis, Todd, Yamal, Jose-Miguel, Weir, Tiffany, Ryan, Elizabeth P, Cope, Julia L, Hollister, Emily B
Published in PloS one

Role of the Gut Microbiome in Obstructive Sleep Apnea-Induced Hypertension

by Durgan, David J, Ganesh, Bhanu P, Cope, Julia L, Ajami, Nadim J, Phillips, Sharon C, Petrosino, Joseph F, Hollister, Emily B, Bryan, Jr, Robert M
Published in Hypertension (Dallas, Tex. 1979)

Composition and function of the pediatric colonic mucosal microbiome in untreated patients with ulcerative colitis

by Shah, Rajesh, Cope, Julia L., Nagy-Szakal, Dorottya, Dowd, Scot, Versalovic, James, Hollister, Emily B., Kellermayer, Richard
Published in Gut microbes

Leveraging Human Microbiome Features to Diagnose and Stratify Children with Irritable Bowel Syndrome

by Hollister, Emily B., Oezguen, Numan, Chumpitazi, Bruno P., Luna, Ruth Ann, Weidler, Erica M., Rubio-Gonzales, Michelle, Dahdouli, Mahmoud, Cope, Julia L., Mistretta, Toni-Ann, Raza, Sabeen, Metcalf, Ginger A., Muzny, Donna M., Gibbs, Richard A., Petrosino, Joseph F., Heitkemper, Margaret, Savidge, Tor C., Shulman, Robert J., Versalovic, James
Published in The Journal of molecular diagnostics : JMD

The Microbiome, Intestinal Function, and Arginine Metabolism of Healthy Indian Women Are Different from Those of American and Jamaican Women

by Kao, Christina C, Cope, Julia L, Hsu, Jean W, Dwarkanath, Pratibha, Karnes, Jeffrey M, Luna, Ruth A, Hollister, Emily B, Thame, Minerva M, Kurpad, Anura V, Jahoor, Farook
Published in The Journal of nutrition

Ribaxamase, an Orally Administered β-Lactamase, Diminishes Changes to Acquired Antimicrobial Resistance of the Gut Resistome in Patients Treated with Ceftriaxone

by Kokai-Kun, John F, Le, Chenxiong, Trout, Kenneth, Cope, Julia L, Ajami, Nadim J, Degar, Andrew J, Connelly, Sheila
Published in Infection and drug resistance

Evaluating the performance of carboxylate platform fermentations across diverse inocula originating as sediments from extreme environments

by Cope, Julia L., Hammett, Amy Jo M., Kolomiets, Elena A., Forrest, Andrea K., Golub, Kristina W., Hollister, Emily B., DeWitt, Thomas J., Gentry, Terry J., Holtzapple, Mark T., Wilkinson, Heather H.
Published in Bioresource technology

Comparison of three screening methods to select mixed-microbial inoculum for mixed-acid fermentations

by Golub, Kristina W., Forrest, Andrea K., Wales, Melinda E., Hammett, Amy Jo M., Cope, Julia L., Wilkinson, Heather H., Holtzapple, Mark T.
Published in Bioresource technology

Randomised clinical trial: gut microbiome biomarkers are associated with clinical response to a low FODMAP diet in children with the irritable bowel syndrome

by Chumpitazi, B. P., Cope, J. L., Hollister, E. B., Tsai, C. M., McMeans, A. R., Luna, R. A., Versalovic, J., Shulman, R. J.
Published in Alimentary pharmacology & therapeutics

Ribaxamase, an Orally Administered [beta]-Lactamase, Diminishes Changes to Acquired Antimicrobial Resistance of the Gut Resistome in Patients Treated with Ceftriaxone.(ORIGINAL RES...

by Kokai-Kun, John F, Le, Chenxiong, Trout, Kenneth, Cope, Julia L, Ajami, Nadim J, Degar, Andrew J, Connelly, Sheila
Published in Infection and drug resistance

The Microbiome, Intestinal Function, and Arginine Metabolism of Healthy Indian Women Are Different from Those of American and Jamaican Women123

by Kao, Christina C, Cope, Julia L, Hsu, Jean W, Dwarkanath, Pratibha, Karnes, Jeffrey M, Luna, Ruth A, Hollister, Emily B, Thame, Minerva M, Kurpad, Anura V, Jahoor, Farook
Published in The Journal of nutrition

The Microbiome, Intestinal Function, and Arginine Metabolism of Healthy Indian Women Are Different from Those of American and Jamaican Women 1-3

by Kao, Christina C, Cope, Julia L, Hsu, Jean W, Dwarkanath, Pratibha, Karnes, Jeffrey M, Luna, Ruth A, Hollister, Emily B, Thame, Minerva M, Kurpad, Anura V, Jahoor, Farook
Published in The Journal of nutrition

Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

by Pammi, Mohan, Cope, Julia, Tarr, Phillip I, Warner, Barbara B, Morrow, Ardythe L, Mai, Volker, Gregory, Katherine E, Kroll, J Simon, McMurtry, Valerie, Ferris, Michael J, Engstrand, Lars, Lilja, Helene Engstrand, Hollister, Emily B, Versalovic, James, Neu, Josef
Published in Microbiome

Detection of Cancer DNA in Plasma of Patients with Early-Stage Breast Cancer

by BEAVER, Julia A, JELOVAC, Danijela, CHU, David, BURNS, Timothy, HIGGINS, Michaela J, STEARNS, Vered, JACOBS, Lisa, HABIBI, Mehran, LANGE, Julie, HURLEY, Paula J, LAURING, Josh, VANDENBERG, Dustin A, BALUKRISHNA, Sasidharan, KESSLER, Jill, JETER, Stacie, SAMUELS, Michael L, MAAR, Dianna, COPE, Leslie, CIMINO-MATHEWS, Ashley, ARGANI, Pedram, WOLFF, Antonio C, BEN HO PARK, COCHRAN, Rory L, CROESSMANN, Sarah, ZABRANSKY, Daniel J, HONG YUEN WONG, TORO, Patricia Valda, CIDADO, Justin, BLAIR, Brian G
Published in Clinical cancer research

Predicting Soil Organic Carbon and Total Nitrogen at the Farm Scale Using Quantitative Color Sensor Measurements

by Stiglitz, Roxanne, Mikhailova, Elena, Sharp, Julia, Post, Christopher, Schlautman, Mark, Gerard, Patrick, Cope, Michael
Published in Agronomy (Basel)

Coastal Landfills and Rising Sea Levels: A Challenge for the 21st Century

by Nicholls, Robert J., Beaven, Richard P., Stringfellow, Anne, Monfort, Daniel, Le Cozannet, Gonéri, Wahl, Thomas, Gebert, Julia, Wadey, Matthew, Arns, Arne, Spencer, Kate L., Reinhart, Debra, Heimovaara, Timo, Santos, Víctor M., Enríquez, Alejandra R., Cope, Samantha
Published in Frontiers in Marine Science

De novo TRIM8 variants impair its protein localization to nuclear bodies and cause developmental delay, epilepsy, and focal segmental glomerulosclerosis

by Weng, Patricia L., Majmundar, Amar J., Khan, Kamal, Lim, Tze Y., Shril, Shirlee, Jin, Gina, Musgrove, John, Wang, Minxian, Ahram, Dina F., Aggarwal, Vimla S., Bier, Louise E., Heinzen, Erin L., Onuchic-Whitford, Ana C., Mann, Nina, Buerger, Florian, Schneider, Ronen, Deutsch, Konstantin, Kitzler, Thomas M., Klämbt, Verena, Kolb, Amy, Mao, Youying, Moufawad El Achkar, Christelle, Mitrotti, Adele, Martino, Jeremiah, Beck, Bodo B., Altmüller, Janine, Benz, Marcus R., Yano, Shoji, Mikati, Mohamad A., Gunduz, Talha, Cope, Heidi, Shashi, Vandana, Trachtman, Howard, Bodria, Monica, Caridi, Gianluca, Pisani, Isabella, Fiaccadori, Enrico, AbuMaziad, Asmaa S., Martinez-Agosto, Julian A., Yadin, Ora, Zuckerman, Jonathan, Kim, Arang, John-Kroegel, Ulrike, Tyndall, Amanda V., Parboosingh, Jillian S., Innes, A. Micheil, Bierzynska, Agnieszka, Koziell, Ania B., Muorah, Mordi, Saleem, Moin A., Hoefele, Julia, Riedhammer, Korbinian M., Gharavi, Ali G., Jobanputra, Vaidehi, Pierce-Hoffman, Emma, Seaby, Eleanor G., O’Donnell-Luria, Anne, Rehm, Heidi L., Mane, Shrikant, D’Agati, Vivette D., Pollak, Martin R., Ghiggeri, Gian Marco, Lifton, Richard P., Goldstein, David B., Davis, Erica E., Hildebrandt, Friedhelm, Sanna-Cherchi, Simone
Published in American journal of human genetics

Characteristics of Persons Who Died with COVID-19 - United States, February 12-May 18, 2020

by Wortham, Jonathan M, Lee, James T, Althomsons, Sandy, Latash, Julia, Davidson, Alexander, Guerra, Kevin, Murray, Kenya, McGibbon, Emily, Pichardo, Carolina, Toro, Brian, Li, Lan, Paladini, Marc, Eddy, Meredith L, Reilly, Kathleen H, McHugh, Lisa, Thomas, Deepam, Tsai, Stella, Ojo, Mojisola, Rolland, Samantha, Bhat, Maya, Hutchinson, Katherine, Sabel, Jennifer, Eckel, Seth, Collins, Jim, Donovan, Catherine, Cope, Anna, Kawasaki, Breanna, McLafferty, Sarah, Alden, Nisha, Herlihy, Rachel, Barbeau, Bree, Dunn, Angela C, Clark, Charles, Pontones, Pamela, McLafferty, Meagan L, Sidelinger, Dean E, Krueger, Anna, Kollmann, Leslie, Larson, Linnea, Holzbauer, Stacy, Lynfield, Ruth, Westergaard, Ryan, Crawford, Richard, Zhao, Lin, Bressler, Jonathan M, Read, Jennifer S, Dunn, John, Lewis, Adele, Richardson, Gillian, Hand, Julie, Sokol, Theresa, Adkins, Susan H, Leitgeb, Brooke, Pindyck, Talia, Eure, Taniece, Wong, Karen, Datta, Deblina, Appiah, Grace D, Brown, Jessica, Traxler, Rita, Koumans, Emilia H, Reagan-Steiner, Sarah
Published in MMWR. Morbidity and mortality weekly report

Monkeypox Outbreak - Nine States, May 2022

by Minhaj, Faisal S, Ogale, Yasmin P, Whitehill, Florence, Schultz, Jordan, Foote, Mary, Davidson, Whitni, Hughes, Christine M, Wilkins, Kimberly, Bachmann, Laura, Chatelain, Ryan, Donnelly, Marisa A P, Mendoza, Rafael, Downes, Barbara L, Roskosky, Mellisa, Barnes, Meghan, Gallagher, Glen R, Basgoz, Nesli, Ruiz, Victoria, Kyaw, Nang Thu Thu, Feldpausch, Amanda, Valderrama, Amy, Alvarado-Ramy, Francisco, Dowell, Chad H, Chow, Catherine C, Li, Yu, Quilter, Laura, Brooks, John, Daskalakis, Demetre C, McClung, R Paul, Petersen, Brett W, Damon, Inger, Hutson, Christina, McQuiston, Jennifer, Rao, Agam K, Belay, Ermias, McCollum, Andrea M
Published in MMWR. Morbidity and mortality weekly report

Monkeypox outbreak—Nine states, May 2022

by Minhaj, Faisal S., Ogale, Yasmin P., Whitehill, Florence, Schultz, Jordan, Foote, Mary, Davidson, Whitni, Hughes, Christine M., Wilkins, Kimberly, Chatelain, Ryan, Donnelly, Marisa A. P., Basgoz, Nesli, Ruiz, Victoria, Kyaw, Nang Thu Thu, Feldpausch, Amanda, Valderrama, Amy, Alvarado‐Ramy, Francisco, Dowell, Chad H., Li, Yu, Quilter, Laura, Brooks, John, McClung, R. Paul, Damon, Inger, Hutson, Christina, McQuiston, Jennifer, Rao, Agam K., Belay, Ermias, Angelo, Kristina, Arduino, Matt, Arthur, Ray, Baird, Nicolle, Batross, Jonathan, Beeson, Amy, Bhingarde, Jui, Bowen, Michael, Brown, Clive, Brown, Catherine M., Burakoff, Alexis, Charniga, Kelly, Chen, Tai‐Ho, Chen, Sherry, Clay, Patrick, Cope, James, Dankwa, Michelle Addo, Delaney, Lisa, De Perio, Marie, Delea, Kristin, Doty, Jeffrey B., Duchin, Jeffrey, Fagan, Ryan, Furness, Bryce, Gearhart, Shannon, Gigante, Crystal, Gilliland, Aubrey, Gosdin, Lucas, Griffin, Isabel, Guagliardo, Sarah, Jackson, Kelly, Jarquin, Paulino, Kachur, Rachel, Kallen, Alexander, Kao, Raymond, Khan, Mohammed, Kofman, Aaron, Kornylo, Krista, Kuhar, David, LaFlam, Michael, Lashombe, Andrew, MacGurn, Amanda, Masters, Nina, McCaffrey, Keegan, Mink, Jenna L., Monroe, Benjamin, Morgan, Clint N., Nakazawa, Yoshinori, Nash, Julie, Navarra, Terese, Newton, Donovan, Osinubi, Modupe, Osorio, Valentina, Pearson, Christine, Petras, Julia, Rey, Araceli, Ricketts, Erin, Rodriguez, Sergio, Rushmore, Julie, Satheshkumar, Panayampalli S., Sharma, Artee, Sims, Emily, Smith, Dallas, Smith, Teresa, Smith, Todd, Spiknall, Ian, Stanek, Danielle R., Strona, Frank, Tardivel, Kara, Tyagi, Eishita, Valencia, Diana, Waltenburg, Michelle, Whitehouse, Erin, Wong, Marcia
Published in American journal of transplantation