FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration

by Dooley, Damion M, Griffiths, Emma J, Gosal, Gurinder S, Buttigieg, Pier L, Hoehndorf, Robert, Lange, Matthew C, Schriml, Lynn M, Brinkman, Fiona S L, Hsiao, William W L
Published in NPJ science of food

Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean

by Fernández-Méndez, Mar, Turk-Kubo, Kendra A, Buttigieg, Pier L, Rapp, Josephine Z, Krumpen, Thomas, Zehr, Jonathan P, Boetius, Antje
Published in Frontiers in microbiology

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission

by Hankeln, Wolfgang, Buttigieg, Pier Luigi, Fink, Dennis, Kottmann, Renzo, Yilmaz, Pelin, Glöckner, Frank Oliver
Published in BMC bioinformatics

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies

by Walls, Ramona L, Deck, John, Guralnick, Robert, Baskauf, Steve, Beaman, Reed, Blum, Stanley, Bowers, Shawn, Buttigieg, Pier Luigi, Davies, Neil, Endresen, Dag, Gandolfo, Maria Alejandra, Hanner, Robert, Janning, Alyssa, Krishtalka, Leonard, Matsunaga, Andréa, Midford, Peter, Morrison, Norman, Ó Tuama, Éamonn, Schildhauer, Mark, Smith, Barry, Stucky, Brian J, Thomer, Andrea, Wieczorek, John, Whitacre, Jamie, Wooley, John
Published in PloS one

Transforming the study of organisms: Phenomic data models and knowledge bases

by Thessen, Anne E, Walls, Ramona L, Vogt, Lars, Singer, Jessica, Warren, Robert, Buttigieg, Pier Luigi, Balhoff, James P, Mungall, Christopher J, McGuinness, Deborah L, Stucky, Brian J, Yoder, Matthew J, Haendel, Melissa A
Published in PLoS computational biology

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

by Glöckner, Frank Oliver, Yilmaz, Pelin, Kottmann, Renzo, Field, Dawn, Knight, Rob, Cole, James R, Amaral-Zettler, Linda, Gilbert, Jack A, Karsch-Mizrachi, Ilene, Johnston, Anjanette, Cochrane, Guy, Vaughan, Robert, Hunter, Christopher, Park, Joonhong, Morrison, Norman, Rocca-Serra, Philippe, Sterk, Peter, Arumugam, Manimozhiyan, Bailey, Mark, Baumgartner, Laura, Birren, Bruce W, Blaser, Martin J, Bonazzi, Vivien, Booth, Tim, Bork, Peer, Bushman, Frederic D, Buttigieg, Pier Luigi, Chain, Patrick S G, Charlson, Emily, Costello, Elizabeth K, Huot-Creasy, Heather, Dawyndt, Peter, DeSantis, Todd, Fierer, Noah, Fuhrman, Jed A, Gallery, Rachel E, Gevers, Dirk, Gibbs, Richard A, Gil, Inigo San, Gonzalez, Antonio, Gordon, Jeffrey I, Guralnick, Robert, Hankeln, Wolfgang, Highlander, Sarah, Hugenholtz, Philip, Jansson, Janet, Kau, Andrew L, Kelley, Scott T, Kennedy, Jerry, Knights, Dan, Koren, Omry, Kuczynski, Justin, Kyrpides, Nikos, Larsen, Robert, Lauber, Christian L, Legg, Teresa, Ley, Ruth E, Lozupone, Catherine A, Ludwig, Wolfgang, Lyons, Donna, Maguire, Eamonn, Methé, Barbara A, Meyer, Folker, Muegge, Brian, Nakielny, Sara, Nelson, Karen E, Nemergut, Diana, Neufeld, Josh D, Newbold, Lindsay K, Oliver, Anna E, Pace, Norman R, Palanisamy, Giriprakash, Peplies, Jörg, Petrosino, Joseph, Proctor, Lita, Pruesse, Elmar, Quast, Christian, Raes, Jeroen, Ratnasingham, Sujeevan, Ravel, Jacques, Relman, David A, Assunta-Sansone, Susanna, Schloss, Patrick D, Schriml, Lynn, Sinha, Rohini, Smith, Michelle I, Sodergren, Erica, Spor, Aymé, Stombaugh, Jesse, Tiedje, James M, Ward, Doyle V, Weinstock, George M, Wendel, Doug, White, Owen, Whiteley, Andrew, Wilke, Andreas, Wortman, Jennifer R, Yatsunenko, Tanya
Published in Nature biotechnology

Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean

by Hörstmann, Cora, Raes, Eric J, Buttigieg, Pier Luigi, Lo Monaco, Claire, John, Uwe, Waite, Anya M
Published in Biogeosciences

Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability

by Meyer, Raïssa, Appeltans, Ward, Duncan, William, Dimitrova, Mariya, Gan, Yi-Ming, Stjernegaard Jeppesen, Thomas, Mungall, Christopher, Paul, Deborah, Provoost, Pieter, Robertson, Tim, Schriml, Lynn, Suominen, Saara, Walls, Ramona, Sweetlove, Maxime, Ung, Visotheary, Van de Putte, Anton, Wallis, Elycia, Wieczorek, John, Buttigieg, Pier
Published in Biodiversity data journal

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

by Buttigieg, Pier Luigi, Pafilis, Evangelos, Lewis, Suzanna E, Schildhauer, Mark P, Walls, Ramona L, Mungall, Christopher J
Published in Journal of biomedical semantics

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

by Jackson, Rebecca, Matentzoglu, Nicolas, Overton, James A, Vita, Randi, Balhoff, James P, Buttigieg, Pier Luigi, Carbon, Seth, Courtot, Melanie, Diehl, Alexander D, Dooley, Damion M, Duncan, William D, Harris, Nomi L, Haendel, Melissa A, Lewis, Suzanna E, Natale, Darren A, Osumi-Sutherland, David, Ruttenberg, Alan, Schriml, Lynn M, Smith, Barry, Stoeckert, Jr, Christian J, Vasilevsky, Nicole A, Walls, Ramona L, Zheng, Jie, Mungall, Christopher J, Peters, Bjoern
Published in Database : the journal of biological databases and curation

European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation

by Santi, Ioulia, Beluche, Odette, Beraud, Mélanie, Buttigieg, Pier Luigi, Casotti, Raffaella, Cox, Cymon J., Cunliffe, Michael, Davies, Neil, de Cerio, Oihane Diaz, Exter, Katrina, Kervella, Anne Emmanuelle, Kotoulas, Georgios, Lagaisse, Rune, Laroquette, Arnaud, Louro, Bruno, Not, Fabrice, Obst, Matthias, Pavloudi, Christina, Poulain, Julie, Præbel, Kim, Vanaverbeke, Jan, Pade, Nicolas
Published in Frontiers in Marine Science

Perspectives on presentation and pedagogy in aid of bioinformatics education

by Buttigieg, Pier Luigi
Published in Briefings in bioinformatics

Accelerating ocean species discovery and laying the foundations for the future of marine biodiversity research and monitoring

by Rogers, Alex David, Appiah-Madson, Hannah, Ardron, Jeff A., Bax, Nicholas J., Bhadury, Punyasloke, Brandt, Angelika, Buttigieg, Pier-Luigi, De Clerck, Olivier, Delgado, Claudia, Distel, Daniel L., Glover, Adrian, Gobin, Judith, Guilhon, Maila, Hampton, Shannon, Harden-Davies, Harriet, Hebert, Paul, Hynes, Lisa, Lowe, Miranda, MacIntyre, Sandy, Madduppa, Hawis, Mazzuco, Ana Carolina de Azevedo, McCallum, Anna, McOwen, Chris, Nattkemper, Tim Wilhelm, Odido, Mika, O’Hara, Tim, Osborn, Karen, Pouponneau, Angelique, Provoost, Pieter, Rabone, Muriel, Ramirez-Llodra, Eva, Scott, Lucy, Sink, Kerry Jennifer, Turk, Daniela, Watanabe, Hiromi Kayama, Weatherdon, Lauren V., Wernberg, Thomas, Williams, Suzanne, Woodall, Lucy, Wright, Dawn J., Zeppilli, Daniela, Steeds, Oliver
Published in Frontiers in Marine Science

Synthesis Product for Ocean Time Series - a ship-based biogeochemical pilot

by Lange, Nico, Fiedler, Björn, Álvarez, Marta, Benoit-Cattin, Alice, Benway, Heather, Buttigieg, Pier Luigi, Coppola, Laurent, Currie, Kim, Flecha, Susana, Gerlach, Dana S, Honda, Makio, Huertas, I. Emma, Lauvset, Siv K, Muller-Karger, Frank, Körtzinger, Arne, O'Brien, Kevin M, Ãlafsdóttir, Sólveig R, Pacheco, Fernando C, Rueda-Roa, Digna, Skjelvan, Ingunn, Wakita, Masahide, White, Angelicque, Tanhua, Toste
Published in Earth system science data

The Bari Manifesto: An interoperability framework for essential biodiversity variables

by Hardisty, Alex R., Michener, William K., Agosti, Donat, Alonso García, Enrique, Bastin, Lucy, Belbin, Lee, Bowser, Anne, Buttigieg, Pier Luigi, Canhos, Dora A.L., Egloff, Willi, De Giovanni, Renato, Figueira, Rui, Groom, Quentin, Guralnick, Robert P., Hobern, Donald, Hugo, Wim, Koureas, Dimitris, Ji, Liqiang, Los, Wouter, Manuel, Jeffrey, Manset, David, Poelen, Jorrit, Saarenmaa, Hannu, Schigel, Dmitry, Uhlir, Paul F., Kissling, W. Daniel
Published in Ecological informatics

Megx.net: integrated database resource for marine ecological genomics

by Kottmann, Renzo, Kostadinov, Ivalyo, Duhaime, Melissa Beth, Buttigieg, Pier Luigi, Yilmaz, Pelin, Hankeln, Wolfgang, Waldmann, Jost, Glöckner, Frank Oliver
Published in Nucleic acids research

Emerging semantics to link phenotype and environment

by Thessen, Anne E, Bunker, Daniel E, Buttigieg, Pier Luigi, Cooper, Laurel D, Dahdul, Wasila M, Domisch, Sami, Franz, Nico M, Jaiswal, Pankaj, Lawrence-Dill, Carolyn J, Midford, Peter E, Mungall, Christopher J, Ramírez, Martín J, Specht, Chelsea D, Vogt, Lars, Vos, Rutger Aldo, Walls, Ramona L, White, Jeffrey W, Zhang, Guanyang, Deans, Andrew R, Huala, Eva, Lewis, Suzanna E, Mabee, Paula M
Published in PeerJ (San Francisco, CA)

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

by Buttigieg, Pier Luigi, Pafilis, Evangelos, Lewis, Suzanna E., Schildhauer, Mark P., Walls, Ramona L., Mungall, Christopher J.
Published in Journal of biomedical semantics

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

by Katayama, Toshiaki, Wilkinson, Mark D, Aoki-Kinoshita, Kiyoko F, Kawashima, Shuichi, Yamamoto, Yasunori, Yamaguchi, Atsuko, Okamoto, Shinobu, Kawano, Shin, Kim, Jin-Dong, Wang, Yue, Wu, Hongyan, Kano, Yoshinobu, Ono, Hiromasa, Bono, Hidemasa, Kocbek, Simon, Aerts, Jan, Akune, Yukie, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Baran, Joachim, Bolleman, Jerven, Bonnal, Raoul Jp, Buttigieg, Pier Luigi, Campbell, Matthew P, Chen, Yi-An, Chiba, Hirokazu, Cock, Peter Ja, Cohen, K Bretonnel, Constantin, Alexandru, Duck, Geraint, Dumontier, Michel, Fujisawa, Takatomo, Fujiwara, Toyofumi, Goto, Naohisa, Hoehndorf, Robert, Igarashi, Yoshinobu, Itaya, Hidetoshi, Ito, Maori, Iwasaki, Wataru, Kalaš, Matúš, Katoda, Takeo, Kim, Taehong, Kokubu, Anna, Komiyama, Yusuke, Kotera, Masaaki, Laibe, Camille, Lapp, Hilmar, Lütteke, Thomas, Marshall, M Scott, Mori, Takaaki, Mori, Hiroshi, Morita, Mizuki, Murakami, Katsuhiko, Nakao, Mitsuteru, Narimatsu, Hisashi, Nishide, Hiroyo, Nishimura, Yosuke, Nystrom-Persson, Johan, Ogishima, Soichi, Okamura, Yasunobu, Okuda, Shujiro, Oshita, Kazuki, Packer, Nicki H, Prins, Pjotr, Ranzinger, Rene, Rocca-Serra, Philippe, Sansone, Susanna, Sawaki, Hiromichi, Shin, Sung-Ho, Splendiani, Andrea, Strozzi, Francesco, Tadaka, Shu, Toukach, Philip, Uchiyama, Ikuo, Umezaki, Masahito, Vos, Rutger, Whetzel, Patricia L, Yamada, Issaku, Yamasaki, Chisato, Yamashita, Riu, York, William S, Zmasek, Christian M, Kawamoto, Shoko, Takagi, Toshihisa
Published in Journal of biomedical semantics

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies: e89606

by Walls, Ramona L, Deck, John, Guralnick, Robert, Baskauf, Steve, Beaman, Reed, Blum, Stanley, Bowers, Shawn, Buttigieg, Pier Luigi, Davies, Neil, Endresen, Dag
Published in PloS one