The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

by Diehl, Alexander D, Meehan, Terrence F, Bradford, Yvonne M, Brush, Matthew H, Dahdul, Wasila M, Dougall, David S, He, Yongqun, Osumi-Sutherland, David, Ruttenberg, Alan, Sarntivijai, Sirarat, Van Slyke, Ceri E, Vasilevsky, Nicole A, Haendel, Melissa A, Blake, Judith A, Mungall, Christopher J
Published in Journal of biomedical semantics

On the reproducibility of science: unique identification of research resources in the biomedical literature

by Vasilevsky, Nicole A, Brush, Matthew H, Paddock, Holly, Ponting, Laura, Tripathy, Shreejoy J, Larocca, Gregory M, Haendel, Melissa A
Published in PeerJ (San Francisco, CA)

Control of Cellular GADD34 Levels by the 26S Proteasome

by Brush, Matthew H., Shenolikar, Shirish
Published in Molecular and Cellular Biology

Growth Arrest and DNA Damage-Inducible Protein GADD34 Targets Protein Phosphatase 1α to the Endoplasmic Reticulum and Promotes Dephosphorylation of the α Subunit of Eukaryotic Tran...

by Brush, Matthew H., Weiser, Douglas C., Shenolikar, Shirish
Published in Molecular and Cellular Biology

Deactylase Inhibitors Disrupt Cellular Complexes Containing Protein Phosphatases and Deacetylases

by Brush, Matthew H., Guardiola, Amaris, Connor, John H., Yao, Tso-Pang, Shenolikar, Shirish
Published in The Journal of biological chemistry

ROCK1 Phosphorylates and Activates Zipper-interacting Protein Kinase

by Hagerty, Laura, Weitzel, Douglas H., Chambers, Jenica, Fortner, Christopher N., Brush, Matthew H., Loiselle, David, Hosoya, Hiroshi, Haystead, Timothy A.J.
Published in The Journal of biological chemistry

The Ontology for Biomedical Investigations

by Bandrowski, Anita, Brinkman, Ryan, Brochhausen, Mathias, Brush, Matthew H, Bug, Bill, Chibucos, Marcus C, Clancy, Kevin, Courtot, Mélanie, Derom, Dirk, Dumontier, Michel, Fan, Liju, Fostel, Jennifer, Fragoso, Gilberto, Gibson, Frank, Gonzalez-Beltran, Alejandra, Haendel, Melissa A, He, Yongqun, Heiskanen, Mervi, Hernandez-Boussard, Tina, Jensen, Mark, Lin, Yu, Lister, Allyson L, Lord, Phillip, Malone, James, Manduchi, Elisabetta, McGee, Monnie, Morrison, Norman, Overton, James A, Parkinson, Helen, Peters, Bjoern, Rocca-Serra, Philippe, Ruttenberg, Alan, Sansone, Susanna-Assunta, Scheuermann, Richard H, Schober, Daniel, Smith, Barry, Soldatova, Larisa N, Stoeckert, Jr, Christian J, Taylor, Chris F, Torniai, Carlo, Turner, Jessica A, Vita, Randi, Whetzel, Patricia L, Zheng, Jie
Published in PloS one

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery

by Gourdine, Jean-Philippe F, Brush, Matthew H, Vasilevsky, Nicole A, Shefchek, Kent, Köhler, Sebastian, Matentzoglu, Nicolas, Munoz-Torres, Monica C, McMurry, Julie A, Zhang, Xingmin Aaron, Robinson, Peter N, Haendel, Melissa A
Published in Database : the journal of biological databases and curation

Association with Endoplasmic Reticulum Promotes Proteasomal Degradation of GADD34 Protein

by Zhou, Wei, Brush, Matthew H., Choy, Meng S., Shenolikar, Shirish
Published in The Journal of biological chemistry

CLO: The cell line ontology

by Sarntivijai, Sirarat, Lin, Yu, Xiang, Zuoshuang, Meehan, Terrence F, Diehl, Alexander D, Vempati, Uma D, Schürer, Stephan C, Pang, Chao, Malone, James, Parkinson, Helen, Liu, Yue, Takatsuki, Terue, Saijo, Kaoru, Masuya, Hiroshi, Nakamura, Yukio, Brush, Matthew H, Haendel, Melissa A, Zheng, Jie, Stoeckert, Christian J, Peters, Bjoern, Mungall, Christopher J, Carey, Thomas E, States, David J, Athey, Brian D, He, Yongqun
Published in Journal of biomedical semantics

Standardization of assay representation in the Ontology for Biomedical Investigations

by Vita, Randi, Zheng, Jie, Jackson, Rebecca, Dooley, Damion, Overton, James A, Miller, Mark A, Berrios, Daniel C, Scheuermann, Richard H, He, Yongqun, McGinty, Hande Küçük, Brochhausen, Mathias, Lin, Aisyah Yu, Jain, Sagar B, Chibucos, Marcus C, Judkins, John, Giglio, Michelle G, Feng, Irene Y, Burns, Gully, Brush, Matthew H, Peters, Bjoern, Stoeckert, Jr, Christian J
Published in Database : the journal of biological databases and curation

Akt and 14-3-3 Control a PACS-2 Homeostatic Switch that Integrates Membrane Traffic with TRAIL-Induced Apoptosis

by Aslan, Joseph E., You, Huihong, Williamson, Danielle M., Endig, Jessica, Youker, Robert T., Thomas, Laurel, Shu, Hongjun, Du, Yuhong, Milewski, Robert L., Brush, Matthew H., Possemato, Anthony, Sprott, Kam, Fu, Haian, Greis, Kenneth D., Runckel, Douglas N., Vogel, Arndt, Thomas, Gary
Published in Molecular cell

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions

by Stucky, Brian J, Balhoff, James P, Barve, Narayani, Barve, Vijay, Brenskelle, Laura, Brush, Matthew H, Dahlem, Gregory A, Gilbert, James D J, Kawahara, Akito Y, Keller, Oliver, Lucky, Andrea, Mayhew, Peter J, Plotkin, David, Seltmann, Katja C, Talamas, Elijah, Vaidya, Gaurav, Walls, Ramona, Yoder, Matt, Zhang, Guanyang, Guralnick, Rob
Published in Biodiversity data journal

32. A new somatic variation model enables precise search strategies for clinical interpretations of patient tumors

by Wagner, Alex H., Brush, Matthew H., Babb, Larry J., Griffith, Malachi, Griffith, Obi L.
Published in Cancer genetics

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

by Diehl, Alexander D., Meehan, Terrence F., Bradford, Yvonne M., Brush, Matthew H., Dahdul, Wasila M., Dougall, David S., He, Yongqun, Osumi-Sutherland, David, Ruttenberg, Alan, Sarntivijai, Sirarat, Van Slyke, Ceri E., Vasilevsky, Nicole A., Haendel, Melissa A., Blake, Judith A., Mungall, Christopher J.
Published in Journal of biomedical semantics

MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome

by Wan, Ying-Wooi, Wangler, Michael F., Yamamoto, Shinya, Chao, Hsiao-Tuan, Mohr, Stephanie E., Adams, Christopher J., Allard, Patrick, Azamian, Mashid S., Bacino, Carlos A., Balasubramanyam, Ashok, Barseghyan, Hayk, Beggs, Alan H., Bellen, Hugo J., Bernstein, Jonathan A., Birch, Camille L., Briere, Lauren C., Burke, Elizabeth A., Burrage, Lindsay C., Chao, Katherine R., Clark, Gary D., Cogan, Joy D., Cooper, Cynthia M., Craigen, William J., Dell’Angelica, Esteban C., Donnell-Fink, Laurel A., Draper, David D., Dries, Annika M., Emrick, Lisa T., Goheen, Mitchell, Golas, Gretchen A., Goldstein, David B., Gordon, Mary G., Gourdine, Jean-Philippe F., Graham, Brett H., Groden, Catherine A., Hackbarth, Mary E., Hamid, Rizwan, Hardee, Isabel, Holm, Ingrid A., Howerton, Ellen M., Jacob, Howard J., Johnston, Jean M., Koeller, David M., Kohler, Jennefer N., Krier, Joel B., Kyle, Jennifer E., Lalani, Seema R., Latham, Lea, Latour, Yvonne L., Lee, Paul R., Levy, Shawn E., Liebendorfer, Adam P., Loomis, Carson R., Maas, Richard L., MacRae, Calum A., Manolio, Teri A., McConkie-Rosell, Allyn, McCray, Alexa T., Moretti, Paolo M., Mulvihill, John J., Murphy, Jennifer L., Muzny, Donna M., Nehrebecky, Michele E., Newberry, J. Scott, Nicholas, Sarah K., Novacic, Donna, Orange, Jordan S., Pena, Loren D.M., Posey, Jennifer E., Potocki, Lorraine, Ramoni, Rachel B., Robertson, Amy K., Rodan, Lance H., Schoch, Kelly, Scott, Daryl A., Sharma, Prashant, Silverman, Edwin K., Soldatos, Ariane G., Splinter, Kimberly, Stoler, Joan M., Strong, Kimberly A., Sullivan, Jennifer A., Sweetser, David A., Thomas, Sara P., Tifft, Cynthia J., Tolman, Nathanial J., Toro, Camilo, Tran, Alyssa A., Vilain, Eric, Wahl, Colleen E., Walley, Nicole M., Webb-Robertson, Bobbie-Jo M., Weech, Alec A., Westerfield, Monte, Wolfe, Lynne A., Yamamoto, Shinya, Yang, Yaping, Zornio, Patricia A., Perrimon, Norbert, Bellen, Hugo J.
Published in American journal of human genetics

The Undiagnosed Diseases Network: Accelerating Discovery about Health and Disease

by Ramoni, Rachel B., Mulvihill, John J., Adams, David R., Allard, Patrick, Ashley, Euan A., Gahl, William A., Loscalzo, Joseph, Adams, Christopher J., Alejandro, Mercedes E., Allard, Patrick, Ashley, Euan A., Azamian, Mashid S., Balasubramanyam, Ashok, Beggs, Alan H., Bellen, Hugo J., Bernstein, Jonathan A., Bick, David P., Birch, Camille L., Boone, Braden E., Briere, Lauren C., Brush, Matthew, Cogan, Joy D., Craigen, William J., Davids, Mariska, Dayal, Jyoti G., Dhar, Shweta U., Dipple, Katrina M., Dorrani, Naghmeh, Dorset, Daniel C., Eckstein, David J., Estwick, Tyra, Godfrey, Rena A., Goheen, Mitchell, Goldstein, David B., Gordon, Mary “Gracie” G., Gourdine, Jean-Philippe F., Haendel, Melissa, Hamid, Rizwan, Handley, Lori H., Hardee, Isabel, Holm, Ingrid A., Howerton, Ellen M., Jacob, Howard J., Jones, Angela L., Koehler, Alanna E., Kohler, Jennefer N., Krasnewich, Donna M., Kyle, Jennifer E., Latham, Lea, Lau, C. Christopher, Lazar, Jozef, Lee, Hane, Lee, Paul R., Levy, Shawn E., Levy, Denise J., Lewis, Richard A., Liebendorder, Adam P., Loomis, Carson R., Loscalzo, Joseph, Maas, Richard L., MacRae, Calum A., Manolio, Teri A., Markello, Thomas C., Mazur, Paul, McConkie-Rosell, Allyn, Metz, Thomas O., Might, Matthew, Moretti, Paolo M., Murphy, Jennifer L., Muzny, Donna M., Nehrebecky, Michele E., Nelson, Stan F., Newman, John H., Nicholas, Sarah K., Palmer, Christina G.S., Phillips, John A., Postlethwait, John H., Rosenfeld, Jill A., Schaffer, Katherine E., Schroeder, Molly C., Scott, Daryl A., Shashi, Vandana, Silverman, Edwin K., Sinsheimer, Janet S., Spillmann, Rebecca C., Stoler, Joan M., Stong, Nicholas, Sullivan, Jennifer A., Tolman, Nathanial J., Tran, Alyssa A., Valivullah, Zaheer M., Waggott, Daryl M., Walsh, Chris A., Wangler, Michael F., Warburton, Mike, Ward, Patricia A., Waters, Katrina M., Wheeler, Matthew T., Yu, Guoyun, Wise, Anastasia L.
Published in American journal of human genetics

Lateral approach to the lumbar spine: The utility of an access surgeon

by Meade, Matthew, Lee, Yunsoo, Brush, Parker, Lambrechts, Mark, Jenkins, Eleanor, Desimone, Cristian, Mccurdy, Michael, Mangan, John, Canseco, Jose, Kurd, Mark, Hilibrand, Alan, Vaccaro, Alexander, Kepler, Christopher, Schroeder, Gregory
Published in Journal of craniovertebral junction and spine

Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine

by Zhao, Yiqing, Brush, Matthew, Wang, Chen, Wagner, Alex H, Liu, Hongfang, Freimuth, Robert R
Published in Bioinformatics (Oxford, England)

Model Organisms Facilitate Rare Disease Diagnosis and Therapeutic Research

by Wangler, Michael F, Yamamoto, Shinya, Chao, Hsiao-Tuan, Posey, Jennifer E, Westerfield, Monte, Postlethwait, John, Hieter, Philip, Boycott, Kym M, Campeau, Philippe M, Bellen, Hugo J
Published in Genetics (Austin)