Emerging technologies for systems vaccinology — multi-omics integration and single-cell (epi)genomic profiling by Wimmers, Florian, Pulendran, Bali

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Acute and persistent responses after H5N1 vaccination in humans by Apps, Richard, Biancotto, Angélique, Candia, Julián, Kotliarov, Yuri, Perl, Shira, Cheung, Foo, Farmer, Rohit, Mulè, Matthew P., Rachmaninoff, Nicholas, Chen, Jinguo, Martins, Andrew J., Shi, Rongye, Zhou, Huizhi, Bansal, Neha, Schum, Paula, Olnes, Matthew J., Milanez-Almeida, Pedro, Han, Kyu Lee, Sellers, Brian, Cortese, Mario, Hagan, Thomas, Rouphael, Nadine, Pulendran, Bali, King, Lisa, Manischewitz, Jody, Khurana, Surender, Golding, Hana, van der Most, Robbert G., Dickler, Howard B., Germain, Ronald N., Schwartzberg, Pamela L., Tsang, John S.

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ERK1-/- Mice Exhibit Th1 Cell Polarization and Increased Susceptibility to Experimental Autoimmune Encephalomyelitis by Agrawal, Anshu, Dillon, Stephanie, Denning, Timothy L, Pulendran, Bali

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Single cell multi-omic analysis identifies key genes differentially expressed in innate lymphoid cells from COVID-19 patients by Kaushik, Abhinav, Chang, Iris, Han, Xiaorui, He, Ziyuan, Komlosi, Zsolt I., Ji, Xuhuai, Cao, Shu, Akdis, Cezmi A., Boyd, Scott, Pulendran, Bali, Maecker, Holden T., Davis, Mark M., Chinthrajah, R. Sharon, DeKruyff, Rosemarie H., Nadeau, Kari C.

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BALDR: a computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data by Upadhyay, Amit A, Kauffman, Robert C, Wolabaugh, Amber N, Cho, Alice, Patel, Nirav B, Reiss, Samantha M, Havenar-Daughton, Colin, Dawoud, Reem A, Tharp, Gregory K, Sanz, Iñaki, Pulendran, Bali, Crotty, Shane, Lee, F Eun-Hyung, Wrammert, Jens, Bosinger, Steven E

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Lipopolysaccharides from Distinct Pathogens Induce Different Classes of Immune Responses In Vivo by Pulendran, Bali, Kumar, Padmasini, Cutler, Christopher W, Mohamadzadeh, Mansour, Van Dyke, Thomas, Banchereau, Jacques

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ImmuneRegulation: a web-based tool for identifying human immune regulatory elements by Kalayci, Selim, Selvan, Myvizhi Esai, Ramos, Irene, Cotsapas, Chris, Harris, Eva, Kim, Eun-Young, Montgomery, Ruth R, Poland, Gregory, Pulendran, Bali, Tsang, John S, Klein, Robert J, Gümüş, Zeynep H

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Low doses of imatinib induce myelopoiesis and enhance host anti-microbial immunity by Napier, Ruth J, Norris, Brian A, Swimm, Alyson, Giver, Cynthia R, Harris, Wayne A C, Laval, Julie, Napier, Brooke A, Patel, Gopi, Crump, Ryan, Peng, Zhenghong, Bornmann, William, Pulendran, Bali, Buller, R Mark, Weiss, David S, Tirouvanziam, Rabindra, Waller, Edmund K, Kalman, Daniel

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Vesicular stomatitis virus oncolysis is potentiated by impairing mTORC1-dependent type I IFN production by Alain, Tommy, Lun, XueQing, Martineau, Yvan, Sean, Polen, Pulendran, Bali, Petroulakis, Emmanuel, Zemp, Franz J, Lemay, Chantal G, Roy, Dominic, Bell, John C, Thomas, George, Kozma, Sara C, Forsyth, Peter A, Costa-Mattioli, Mauro, Sonenberg, Nahum

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Modulating vaccine responses with dendritic cells and Toll-like receptors by Pulendran, Bali

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Editorial overview: Vaccines 2020 by Pulendran, Bali, Rappuoli, Rino

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Activation of toll-like receptor-2 by endogenous matrix metalloproteinase-2 modulates dendritic-cell-mediated inflammatory responses by Godefroy, Emmanuelle, Gallois, Anne, Idoyaga, Juliana, Merad, Miriam, Tung, Navpreet, Monu, Ngozi, Saenger, Yvonne, Fu, Yichun, Ravindran, Rajesh, Pulendran, Bali, Jotereau, Francine, Trombetta, Sergio, Bhardwaj, Nina

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The Immune Signatures data resource, a compendium of systems vaccinology datasets by Diray-Arce, Joann, Miller, Helen E R, Henrich, Evan, Gerritsen, Bram, Mulè, Matthew P, Fourati, Slim, Gygi, Jeremy, Hagan, Thomas, Tomalin, Lewis, Rychkov, Dmitry, Kazmin, Dmitri, Chawla, Daniel G, Meng, Hailong, Dunn, Patrick, Campbell, John, Sarwal, Minnie, Tsang, John S, Levy, Ofer, Pulendran, Bali, Sekaly, Rafick, Floratos, Aris, Gottardo, Raphael, Kleinstein, Steven H, Suárez-Fariñas, Mayte

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Broadly reactive human CD8 T cells that recognize an epitope conserved between VZV, HSV and EBV by Chiu, Christopher, McCausland, Megan, Sidney, John, Duh, Fuh-Mei, Rouphael, Nadine, Mehta, Aneesh, Mulligan, Mark, Carrington, Mary, Wieland, Andreas, Sullivan, Nicole L, Weinberg, Adriana, Levin, Myron J, Pulendran, Bali, Peters, Bjoern, Sette, Alessandro, Ahmed, Rafi

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Multiple Innate Immune Pathways Contribute to the Immunogenicity of Recombinant Adenovirus Vaccine Vectors by RHEE, Elizabeth G, BLATTMAN, Joseph N, GREENBERG, Philip D, BAROUCH, Dan H, KASTURI, Sudhir P, KELLEY, R. Phelps, KAUFMAN, David R, LYNCH, Diana M, LA PORTE, Annalena, SIMMONS, Nathaniel L, CLARK, Sarah L, PULENDRAN, Bali

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Mice lacking flt3 ligand have deficient hematopoiesis affecting hematopoietic progenitor cells, dendritic cells, and natural killer cells by McKenna, Hilary J., Stocking, Kim L., Miller, Robert E., Brasel, Kenneth, De Smedt, Thibaut, Maraskovsky, Eugene, Maliszewski, Charles R., Lynch, David H., Smith, Jeffrey, Pulendran, Bali, Roux, Eileen R., Teepe, Mark, Lyman, Stewart D., Peschon, Jacques J.

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Flt3-Ligand and Granulocyte Colony-Stimulating Factor Mobilize Distinct Human Dendritic Cell Subsets In Vivo by Pulendran, Bali, Banchereau, Jacques, Burkeholder, Susan, Kraus, Elizabeth, Guinet, Elisabeth, Chalouni, Cecile, Caron, Dania, Maliszewski, Charles, Davoust, Jean, Fay, Joseph, Palucka, Karolina

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Variegation of the Immune Response with Dendritic Cells and Pathogen Recognition Receptors by Pulendran, Bali

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Immunogenomics and systems biology of vaccines by Buonaguro, Luigi, Pulendran, Bali

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Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses by Natrajan, Muktha S, Rouphael, Nadine, Lai, Lilin, Kazmin, Dmitri, Jensen, Travis L, Weiss, David S, Ibegbu, Chris, Sztein, Marcelo B, Hooper, William F, Hill, Heather, Anderson, Evan J, Johnson, Robert, Sanz, Patrick, Pulendran, Bali, Goll, Johannes B, Mulligan, Mark J

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