The Ectocarpus genome and the independent evolution of multicellularity in brown algae

by Cock, J. Mark, Sterck, Lieven, Rouzé, Pierre, Scornet, Delphine, Allen, Andrew E, Amoutzias, Grigoris, Anthouard, Veronique, Artiguenave, François, Aury, Jean-Marc, Badger, Jonathan H, Beszteri, Bank, Billiau, Kenny, Bonnet, Eric, Bothwell, John H, Bowler, Chris, Boyen, Catherine, Brownlee, Colin, Carrano, Carl J, Charrier, Bénédicte, Cho, Ga Youn, Coelho, Susana M, Collén, Jonas, Corre, Erwan, Da Silva, Corinne, Delage, Ludovic, Delaroque, Nicolas, Dittami, Simon M, Doulbeau, Sylvie, Elias, Marek, Farnham, Garry, Gachon, Claire M. M, Gschloessl, Bernhard, Heesch, Svenja, Jabbari, Kamel, Jubin, Claire, Kawai, Hiroshi, Kimura, Kei, Kloareg, Bernard, Küpper, Frithjof C, Lang, Daniel, Le Bail, Aude, Leblanc, Catherine, Lerouge, Patrice, Lohr, Martin, Lopez, Pascal J, Martens, Cindy, Maumus, Florian, Michel, Gurvan, Miranda-Saavedra, Diego, Morales, Julia, Moreau, Hervé, Motomura, Taizo, Nagasato, Chikako, Napoli, Carolyn A, Nelson, David R, Nyvall-Collén, Pi, Peters, Akira F, Pommier, Cyril, Potin, Philippe, Poulain, Julie, Quesneville, Hadi, Read, Betsy, Rensing, Stefan A, Ritter, Andrés, Rousvoal, Sylvie, Samanta, Manoj, Samson, Gaelle, Schroeder, Declan C, Ségurens, Béatrice, Strittmatter, Martina, Tonon, Thierry, Tregear, James W, Valentin, Klaus, von Dassow, Peter, Yamagishi, Takahiro, Van de Peer, Yves, Wincker, Patrick
Published in Nature (London)

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

by Rouxel, Thierry, Grandaubert, Jonathan, Hane, James K, Hoede, Claire, van de Wouw, Angela P, Couloux, Arnaud, Dominguez, Victoria, Anthouard, Véronique, Bally, Pascal, Bourras, Salim, Cozijnsen, Anton J, Ciuffetti, Lynda M, Degrave, Alexandre, Dilmaghani, Azita, Duret, Laurent, Fudal, Isabelle, Goodwin, Stephen B, Gout, Lilian, Glaser, Nicolas, Linglin, Juliette, Kema, Gert H. J, Lapalu, Nicolas, Lawrence, Christopher B, May, Kim, Meyer, Michel, Ollivier, Bénédicte, Poulain, Julie, Schoch, Conrad L, Simon, Adeline, Spatafora, Joseph W, Stachowiak, Anna, Turgeon, B. Gillian, Tyler, Brett M, Vincent, Delphine, Weissenbach, Jean, Amselem, Joëlle, Quesneville, Hadi, Oliver, Richard P, Wincker, Patrick, Balesdent, Marie-Hélène, Howlett, Barbara J
Published in Nature communications

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

by Hamamouch, Noureddine, Castagnone-Sereno, Philippe, Flutre, Timothé, Steinbach, Delphine, Aury, Jean-Marc, Sallet, Erika, Anthouard, Véronique, Grenier, Eric, Poulain, Julie, Robinson-Rechavi, Marc, Abad, Pierre, Deau, Florence, Quesneville, Hadi, Magliano, Marc, Jones, John T, Pesole, Graziano, Blok, Vivian C, De Luca, Francesca, Caillaud, Marie-Cécile, Maier, Tom R, Weissenbach, Jean, Maule, Aaron G, Esquibet, Magali, Leonetti, Paola, Smant, Geert, Favery, Bruno, Blaxter, Mark, Jaillon, Olivier, Gouzy, Jérôme, Coutinho, Pedro M, Markov, Gabriel V, Henrissat, Bernard, Dasilva, Corinne, Veronico, Pasqua, Baum, Thomas J, van Ghelder, Cyril, Schiex, Thomas, Ewbank, Jonathan J, Hewezi, Tarek, Wincker, Patrick, Jubin, Claire, McVeigh, Paul, Tytgat, Tom, Ségurens, Béatrice, Bleve-Zacheo, Teresa, Davis, Eric L, Rosso, Marie-Noëlle, Artiguenave, François, Ugarte, Edgardo, Deleury, Emeline, Goldstone, Jared V, Danchin, Etienne G J, Perfus-Barbeoch, Laetitia, Laudet, Vincent
Published in Nature biotechnology

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

by Denoeud, France, Henriet, Simon, Mungpakdee, Sutada, Aury, Jean-Marc, Da Silva, Corinne, Brinkmann, Henner, Mikhaleva, Jana, Olsen, Lisbeth Charlotte, Jubin, Claire, Cañestro, Cristian, Bouquet, Jean-Marie, Danks, Gemma, Poulain, Julie, Campsteijn, Coen, Adamski, Marcin, Cross, Ismael, Yadetie, Fekadu, Muffato, Matthieu, Louis, Alexandra, Butcher, Stephen, Tsagkogeorga, Georgia, Konrad, Anke, Singh, Sarabdeep, Jensen, Marit Flo, Cong, Evelyne Huynh, Eikeseth-Otteraa, Helen, Noel, Benjamin, Anthouard, Véronique, Porcel, Betina M., Kachouri-Lafond, Rym, Nishino, Atsuo, Ugolini, Matteo, Chourrout, Pascal, Nishida, Hiroki, Aasland, Rein, Huzurbazar, Snehalata, Westhof, Eric, Delsuc, Frédéric, Lehrach, Hans, Reinhardt, Richard, Weissenbach, Jean, Roy, Scott W., Artiguenave, François, Postlethwait, John H., Manak, J. Robert, Thompson, Eric M., Jaillon, Olivier, Du Pasquier, Louis, Boudinot, Pierre, Liberles, David A., Volff, Jean-Nicolas, Philippe, Hervé, Lenhard, Boris, Crollius, Hugues Roest, Wincker, Patrick, Chourrout, Daniel
Published in Science (American Association for the Advancement of Science)

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

by Duret, Laurent, Lepère, Gersende, Katinka, Michael, Bétermier, Mireille, Daubin, Vincent, Koll, France, Malinsky, Sophie, Dessen, Philippe, Scarpelli, Claude, Jubin, Claire, Billaut, Alain, Aiach, Nathalie, Beisson, Janine, Ségurens, Béatrice, Jaillon, Olivier, Kissmehl, Roland, Nowacki, Mariusz, Noel, Benjamin, Klotz, Catherine, Guigo, Roderic, Bouhouche, Khaled, Nowak, Jacek K, Meyer, Eric, Anthouard, Véronique, Arnaiz, Olivier, Zagulski, Marek, Wincker, Patrick, Aury, Jean-Marc, Cohen, Jean, Serrano, Vincent, Schächter, Vincent, Duharcourt, Sandra, Porcel, Betina M, Câmara, Francisco, Plattner, Helmut, Blanc, Isabelle, Poulain, Julie, Le Mouël, Anne, Weissenbach, Jean, Sperling, Linda, Keller, Anne-Marie, Gogendeau, Delphine, Ruiz, Françoise
Published in Nature

Comparative genomics of protoploid Saccharomycetaceae

by Souciet, Jean-Luc, Dujon, Bernard, Gaillardin, Claude, Johnston, Mark, Baret, Philippe V, Cliften, Paul, Sherman, David J, Weissenbach, Jean, Westhof, Eric, Wincker, Patrick, Jubin, Claire, Poulain, Julie, Barbe, Valérie, Ségurens, Béatrice, Artiguenave, François, Anthouard, Véronique, Vacherie, Benoit, Val, Marie-Eve, Fulton, Robert S, Minx, Patrick, Wilson, Richard, Durrens, Pascal, Jean, Géraldine, Marck, Christian, Martin, Tiphaine, Nikolski, Macha, Rolland, Thomas, Seret, Marie-Line, Casarégola, Serge, Despons, Laurence, Fairhead, Cécile, Fischer, Gilles, Lafontaine, Ingrid, Leh, Véronique, Lemaire, Marc, de Montigny, Jacky, Neuvéglise, Cécile, Thierry, Agnès, Blanc-Lenfle, Isabelle, Bleykasten, Claudine, Diffels, Julie, Fritsch, Emilie, Frangeul, Lionel, Goëffon, Adrien, Jauniaux, Nicolas, Kachouri-Lafond, Rym, Payen, Célia, Potier, Serge, Pribylova, Lenka, Ozanne, Christophe, Richard, Guy-Franck, Sacerdot, Christine, Straub, Marie-Laure, Talla, Emmanuel
Published in Genome Research

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

by Martin, Francis, Kohler, Annegret, Murat, Claude, Balestrini, Raffaella, Coutinho, Pedro M, Jaillon, Olivier, Montanini, Barbara, Morin, Emmanuelle, Noel, Benjamin, Percudani, Riccardo, Porcel, Bettina, Rubini, Andrea, Amicucci, Antonella, Amselem, Joelle, Anthouard, Véronique, Arcioni, Sergio, Artiguenave, François, Aury, Jean-Marc, Ballario, Paola, Bolchi, Angelo, Brenna, Andrea, Brun, Annick, Buée, Marc, Cantarel, Brandi, Chevalier, Gérard, Couloux, Arnaud, Da Silva, Corinne, Denoeud, France, Duplessis, Sébastien, Ghignone, Stefano, Hilselberger, Benoît, Iotti, Mirco, Marçais, Benoît, Mello, Antonietta, Miranda, Michele, Pacioni, Giovanni, Quesneville, Hadi, Riccioni, Claudia, Ruotolo, Roberta, Splivallo, Richard, Stocchi, Vilberto, Tisserant, Emilie, Viscomi, Arturo Roberto, Zambonelli, Alessandra, Zampieri, Elisa, Henrissat, Bernard, Lebrun, Marc-Henri, Paolocci, Francesco, Bonfante, Paola, Ottonello, Simone, Wincker, Patrick
Published in Nature (London)

grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

by Jaillon, O, Aury, J.M, Noel, B, Policriti, A, Clepet, C, Casagrande, A, Choisne, N, Aubourg, S, Vitulo, N, Jubin, C
Published in Nature

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

by Zivanovic, Yvan, Armengaud, Jean, Lagorce, Arnaud, Leplat, Christophe, Guérin, Philippe, Dutertre, Murielle, Anthouard, Véronique, Forterre, Patrick, Wincker, Patrick, Confalonieri, Fabrice
Published in Genome Biology

Genome evolution in yeasts

by Dujon, B, Sherman, D, Fischer, G, Durrens, P, Casaregola, S, Lafontaine, I, Montigny, J. de, Marck, C, Neuveglise, C, Talla, E
Published in Nature

The genome sequence of the model ascomycete fungus Podospora anserina

by Espagne, Eric, Lespinet, Olivier, Malagnac, Fabienne, Da Silva, Corinne, Jaillon, Olivier, Porcel, Betina M, Couloux, Arnaud, Aury, Jean-Marc, Ségurens, Béatrice, Poulain, Julie, Anthouard, Véronique, Grossetete, Sandrine, Khalili, Hamid, Coppin, Evelyne, Déquard-Chablat, Michelle, Picard, Marguerite, Contamine, Véronique, Arnaise, Sylvie, Bourdais, Anne, Berteaux-Lecellier, Véronique, Gautheret, Daniel, de Vries, Ronald P, Battaglia, Evy, Coutinho, Pedro M, Danchin, Etienne Gj, Henrissat, Bernard, Khoury, Riyad El, Sainsard-Chanet, Annie, Boivin, Antoine, Pinan-Lucarré, Bérangère, Sellem, Carole H, Debuchy, Robert, Wincker, Patrick, Weissenbach, Jean, Silar, Philippe
Published in Genome Biology

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

by Denoeud, France, Roussel, Michaël, Noel, Benjamin, Wawrzyniak, Ivan, Da Silva, Corinne, Diogon, Marie, Viscogliosi, Eric, Brochier-Armanet, Céline, Couloux, Arnaud, Poulain, Julie, Segurens, Béatrice, Anthouard, Véronique, Texier, Catherine, Blot, Nicolas, Poirier, Philippe, Ng, Geok Choo, Tan, Kevin S W, Artiguenave, François, Jaillon, Olivier, Aury, Jean-Marc, Delbac, Frédéric, Wincker, Patrick, Vivarès, Christian P, El Alaoui, Hicham
Published in Genome Biology

The complete mitochondrial genome of the yeast Kluyveromyces thermotolerans

by Talla, Emmanuel, Anthouard, Véronique, Bouchier, Christiane, Frangeul, Lionel, Dujon, Bernard
Published in FEBS letters

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

by Aury, Jean-Marc, Cruaud, Corinne, Barbe, Valérie, Rogier, Odile, Mangenot, Sophie, Samson, Gaelle, Poulain, Julie, Anthouard, Véronique, Scarpelli, Claude, Artiguenave, François, Wincker, Patrick
Published in BMC genomics

A Panoramic View of Gene Expression in the Human Kidney

by Chabardès-Garonne, Danielle, Méjean, Arnaud, Aude, Jean-Christophe, Cheval, Lydie, Di Stefano, Antonio, Gaillard, Marie-Claude, Imbert-Teboul, Martine, Wittner, Monika, Balian, Chanth, Anthouard, Véronique, Robert, Catherine, Ségurens, Béatrice, Wincker, Patrick, Weìssenbach, Jean, Doucet, Alain, Elalouf, Jean-Marc
Published in Proceedings of the National Academy of Sciences - PNAS

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

by Amselem, Joelle, Cuomo, Christina A, van Kan, Jan A L, Viaud, Muriel, Benito, Ernesto P, Couloux, Arnaud, Coutinho, Pedro M, de Vries, Ronald P, Dyer, Paul S, Fillinger, Sabine, Fournier, Elisabeth, Gout, Lilian, Hahn, Matthias, Kohn, Linda, Lapalu, Nicolas, Plummer, Kim M, Pradier, Jean-Marc, Quévillon, Emmanuel, Sharon, Amir, Simon, Adeline, ten Have, Arjen, Tudzynski, Bettina, Tudzynski, Paul, Wincker, Patrick, Andrew, Marion, Anthouard, Véronique, Beever, Ross E, Beffa, Rolland, Benoit, Isabelle, Bouzid, Ourdia, Brault, Baptiste, Chen, Zehua, Choquer, Mathias, Collémare, Jérome, Cotton, Pascale, Danchin, Etienne G, Da Silva, Corinne, Gautier, Angélique, Giraud, Corinne, Giraud, Tatiana, Gonzalez, Celedonio, Grossetete, Sandrine, Güldener, Ulrich, Henrissat, Bernard, Howlett, Barbara J, Kodira, Chinnappa, Kretschmer, Matthias, Lappartient, Anne, Leroch, Michaela, Levis, Caroline, Mauceli, Evan, Neuvéglise, Cécile, Oeser, Birgitt, Pearson, Matthew, Poulain, Julie, Poussereau, Nathalie, Quesneville, Hadi, Rascle, Christine, Schumacher, Julia, Ségurens, Béatrice, Sexton, Adrienne, Silva, Evelyn, Sirven, Catherine, Soanes, Darren M, Talbot, Nicholas J, Templeton, Matt, Yandava, Chandri, Yarden, Oded, Zeng, Qiandong, Rollins, Jeffrey A, Lebrun, Marc-Henri, Dickman, Marty
Published in PLoS genetics

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

by Weissenbach, Jean, Jaillon, Olivier, Aury, Jean-Marc, Brunet, Frédéric, Petit, Jean-Louis, Stange-Thomann, Nicole, Mauceli, Evan, Bouneau, Laurence, Fischer, Cécile, Ozouf-Costaz, Catherine, Bernot, Alain, Nicaud, Sophie, Jaffe, David, Fisher, Sheila, Lutfalla, Georges, Dossat, Carole, Segurens, Béatrice, Dasilva, Corinne, Salanoubat, Marcel, Levy, Michael, Boudet, Nathalie, Castellano, Sergi, Anthouard, Véronique, Jubin, Claire, Castelli, Vanina, Katinka, Michael, Vacherie, Benoît, Biémont, Christian, Skalli, Zineb, Cattolico, Laurence, Poulain, Julie, de Berardinis, Véronique, Cruaud, Corinne, Duprat, Simone, Brottier, Philippe, Coutanceau, Jean-Pierre, Gouzy, Jérôme, Parra, Genis, Lardier, Guillaume, Chapple, Charles, McKernan, Kevin J, McEwan, Paul, Bosak, Stephanie, Kellis, Manolis, Volff, Jean-Nicolas, Guigó, Roderic, Zody, Michael C, Mesirov, Jill, Lindblad-Toh, Kerstin, Birren, Bruce, Nusbaum, Chad, Kahn, Daniel, Robinson-Rechavi, Marc, Laudet, Vincent, Schachter, Vincent, Quétier, Francis, Saurin, William, Scarpelli, Claude, Wincker, Patrick, Lander, Eric S, Roest Crollius, Hugues
Published in Nature

Publisher Correction: The DNA sequence and analysis of human chromosome 14

by Heilig, Roland, Eckenberg, Ralph, Petit, Jean-Louis, Fonknechten, Núria, Da Silva, Corinne, Cattolico, Laurence, Levy, Michaël, Barbe, Valérie, de Berardinis, Véronique, Ureta-Vidal, Abel, Pelletier, Eric, Vico, Virginie, Anthouard, Véronique, Rowen, Lee, Madan, Anup, Qin, Shizhen, Sun, Hui, Du, Hui, Pepin, Kymberlie, Artiguenave, François, Robert, Catherine, Cruaud, Corinne, Brüls, Thomas, Jaillon, Olivier, Friedlander, Lucie, Samson, Gaelle, Brottier, Philippe, Cure, Susan, Ségurens, Béatrice, Anière, Franck, Samain, Sylvie, Crespeau, Hervé, Abbasi, Nissa, Aiach, Nathalie, Boscus, Didier, Dickhoff, Rachel, Dors, Monica, Dubois, Ivan, Friedman, Cynthia, Gouyvenoux, Michel, James, Rose, Madan, Anuradha, Mairey-Estrada, Barbara, Mangenot, Sophie, Martins, Nathalie, Ménard, Manuela, Oztas, Sophie, Ratcliffe, Amber, Shaffer, Tristan, Trask, Barbara, Vacherie, Benoit, Bellemere, Chadia, Belser, Caroline, Besnard-Gonnet, Marielle, Bartol-Mavel, Delphine, Boutard, Magali, Briez-Silla, Stéphanie, Combette, Stephane, Dufossé-Laurent, Virginie, Ferron, Carolyne, Lechaplais, Christophe, Louesse, Claudine, Muselet, Delphine, Magdelenat, Ghislaine, Pateau, Emilie, Petit, Emmanuelle, Sirvain-Trukniewicz, Peggy, Trybou, Arnaud, Vega-Czarny, Nathalie, Bataille, Elodie, Bluet, Elodie, Bordelais, Isabelle, Dubois, Maria, Dumont, Corinne, Guérin, Thomas, Haffray, Sébastien, Hammadi, Rachid, Muanga, Jacqueline, Pellouin, Virginie, Robert, Dominique, Wunderle, Edith, Gauguet, Gilbert, Roy, Alice, Sainte-Marthe, Laurent, Verdier, Jean, Verdier-Discala, Claude, Hillier, LaDeana, Fulton, Lucinda, McPherson, John, Matsuda, Fumihiko, Wilson, Richard, Scarpelli, Claude, Gyapay, Gábor, Wincker, Patrick, Saurin, William, Quétier, Francis, Waterston, Robert, Hood, Leroy, Weissenbach, Jean
Published in Nature (London)

Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation

by Eiglmeier, Karin, Wincker, Patrick, Cattolico, Laurence, Anthouard, Veronique, Holm, Inge, Eckenberg, Ralph, Quesneville, Hadi, Jaillon, Olivier, Collins, Frank H., Weissenbach, Jean, Brey, Paul T., Roth, Charles W.
Published in Insect biochemistry and molecular biology

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla: the French-Italian public consortium for grapevine genome characterization

by Jaillon, Olivier, Aury, Jean-Marc, Noel, Benjamin, Policriti, Alberto, Clepet, Christian, Casagrande, Alberto, Choisne, Nathalie, Aubourg, Sebastien, Vitulo, Nicola, Jubin, Claire, Vezzi, Alessandro, Legeai, Fabrice, Hugueney, Philippe, Dasilva, Corinne, Horner, David, Mica, Erica, Jublot, Delphine, Poulain, Julie, Bruyere, Clemence, Billault, Alain, Segurens, Beatrice, Gouyvenoux, Michel, Ugarte, Edgardo, Cattonaro, Federica, Anthouard, Veronique, Vico, Virginie, Del Fabbro, Cristian, Alaux, Michael, Gaspero, Gabriele Di, Dumas, Vincent, Felice, Nicoletta, Paillard, Sophie, Juman, Irena, Moroldo, Marco, Scalabrin, Simone, Canaguier, Aurelie, Clainche, Isabelle Le, Malacrida, Giorgio, Durand, Eleonore, Pesole, Graziano, Laucou, Valerie, Chatelet, Philippe, Merdinoglu, Didier, Delledonne, Massimo, Pezzotti, Mario, Lecharny, Alain, Scarpelli, Claude, Artiguenave, Francois, Pe, M. Enrico, Valle, Giorgio, Morgante, Michele, Caboche, Michel, Adam-Blondon, Anne-Francoise, Weissenbach, Jean, Quetier, Francis, Wincker, Patrick
Published in Nature (London)