Are we ready to detect nematode diversity by next generation sequencing?

by Peham, Thomas, Steiner, Florian M., Schlick‐Steiner, Birgit C., Arthofer, Wolfgang
Published in Ecology and evolution

Complete mitochondrial genomes of eleven extinct or possibly extinct bird species

by Anmarkrud, Jarl Andreas, Lifjeld, Jan Terje
Published in Molecular ecology resources

Combining bleach and mild pre-digestion improves ancient DNA recovery from bones

by Boessenkool, Sanne, Hanghøj, Kristian, Nistelberger, Heidi Maria, Der Sarkissian, Clio, Gondek, Agata Teresa, Orlando, Ludovic, Barrett, James H, Star, Bastiaan
Published in Molecular ecology resources

Metagenomics: A viable tool for reconstructing herbivore diet

by Chua, Physilia Y. S, Crampton-Platt, Alex, Lammers, Youri, Alsos, Inger G, Boessenkool, Sanne, Bohmann, Kristine
Published in Molecular ecology resources

An accurate assignment test for extremely low-coverage whole-genome sequence data

by Ferrari, Giada, Atmore, Lane Margaret, Jentoft, Sissel, Jakobsen, Kjetill Sigurd, Makowiecki, Daniel, Barrett, James, Star, Bastiaan
Published in Molecular ecology resources

Minimizing polymerase biases in metabarcoding

by Nichols, Ruth V, Vollmers, Christopher, Newsom, Lee A, Wang, Yue, Heintzman, Peter D, Leighton, McKenna, Green, Richard E, Shapiro, Beth
Published in Molecular ecology resources

Improving the reliability of eDNA data interpretation

by Burian, Alfred, Mauvisseau, Quentin, Bulling, Mark, Domisch, Sami, Qian, Song, Sweet, Michael
Published in Molecular ecology resources

The influence of intraspecific sequence variation during DNA metabarcoding: A case study of eleven fungal species

by Estensmo, Eva Lena Fjeld, Maurice, Sundy Ursula Mary Jane, Morgado, Luis, Martin-Sanchez, Pedro Maria, Skrede, Inger, Kauserud, Håvard
Published in Molecular ecology resources

A molecular-based identification resource for the arthropods of Finland

by Roslin, Tomas, Somervuo, Panu, Pentinsaari, Mikko, Hebert, Paul D. N, Agda, Jireh, Ahlroth, Petri, Anttonen, Perttu, Aspi, Jouni, Blagoev, Gergin, Blanco, Santiago, Chan, Dean, Clayhills, Tom, deWaard, Jeremy, deWaard, Stephanie, Elliot, Tyler, Elo, Riikka, Haapala, Sami, Helve, Eero, Ilmonen, Jari, Hirvonen, Petri, Ho, Chris, Itämies, Juhani, Ivanov, Vladislav, Jakovlev, Jevgeni, Juslén, Aino, Jussila, Reijo, Kahanpää, Jere, Kaila, Lauri, Kaitila, Jari-Pekka, Kakko, Ari, Kakko, Iiro, Karhu, Ali, Karjalainen, Sami, Kjærandsen, Jostein, Koskinen, Janne, Laasonen, Erkki M, Laasonen, Leena, Laine, Erkka, Lampila, Petri, Levesque-Beaudin, Valerie, Lu, Liuqiong, Lähteenaro, Meri, Majuri, Pekka, Malmberg, Sampsa, Manjunath, Ramya, Martikainen, Petri, Mattila, Jaakko, McKeown, Jaclyn, Metsälä, Petri, Miklasevskaja, Margarita, Miller, Meredith, Miskie, Renee, Muinonen, Arto, Mukkala, Veli-Matti, Naik, Suresh, Nikolova, Nadia, Nupponen, Kari, Ovaskainen, Otso, Österblad, Ika, Paasivirta, Lauri, Pajunen, Timo, Parkko, Petri, Paukkunen, Juho, Penttinen, Ritva, Perez, Kate, Pohjoismäki, Jaakko, Prosser, Sean, Raekunnas, Martti, Rahulan, Miduna, Rannisto, Meeri, Ratnasingham, Sujeevan, Raukko, Pekka, Rinne, Aki, Rintala, Teemu, Miranda Romo, Susana, Salmela, Jukka, Salokannel, Juha, Savolainen, Riitta, Schulman, Leif, Sihvonen, Pasi, Soliman, Dina, Sones, Jayme, Steinke, Claudia, Ståhls, Gunilla, Tabell, Jukka, Tiusanen, Mikko, Várkonyi, Gergely, Vesterinen, Eero J, Viitanen, Esko, Vikberg, Veli, Viitasaari, Matti, Vilen, Jussi, Warne, Connor, Wei, Catherine, Winqvist, Kaj, Zakharov, Evgeny, Mutanen, Marko
Published in Molecular ecology resources

Evolutionary history and seascape genomics of Harbour porpoises (Phocoena phocoena) across environmental gradients in the North Atlantic and adjacent waters

by Celemín, Enrique, Autenrieth, Marijke, Roos, Anna, Pawliczka, Iwona, Quintela, Maria, Lindstrøm, Ulf Ove, Benke, Harald, Siebert, Ursula, Lockyer, Christina, Berggren, Per, Özturk, A. Amaha, Özturk, Bayram, Lesage, Véronique, Tiedemann, Ralph
Published in Molecular ecology resources

Merging two eDNA metabarcoding approaches and citizen-science based sampling to facilitate fish community monitoring along vast Sub-Saharan coastlines

by Burian, Alfred, Bruce, Kat, Tovela, E, Bakker, Judith, Balcells, Laia, Bennett, R, Chordekar, S, Costa, Hugo P, Crampton-Platt, Alex, de Boer, Hugo, Ross-Gillespie, Vere, Sacramento, A, Sidat, N, Simbine, L, Ready, Jonathan Stuart, Tang, C, Mauvisseau, Quentin
Published in Molecular ecology resources

Metabarcoding of shrimp stomach content: harnessing a natural sampler for fish biodiversity monitoring

by Siegenthaler, Andjin, Wangensteen Fuentes, Owen Simon, Soto, Ana Z, Benvenuto, Chiara, Corrigan, Laura, Mariani, Stefano
Published in Molecular ecology resources

Using target capture to address conservation challenges: Population-level tracking of a globally-traded herbal medicine

by Manzanilla, Vincent, Teixidor Toneu, Irene, Martin, Gary, Hollingsworth, Peter M, de Boer, Hugo, Kool, Anneleen
Published in Molecular ecology resources

Individual genotypes from environmental DNA: Fingerprinting snow tracks of three large carnivore species

by De Barba, Marta, Baur, Molly, Boyer, Frédéric, Fumagalli, Luca, Konec, Marjeta, Miquel, Christian, Pazhenkova, Elena, Remollino, Nadège, Skrbinšek, Tomaž, Stoffel, Céline, Taberlet, Pierre Robert Michel
Published in Molecular ecology resources

Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary

by Elbers, Jean P, Rogers, Mark F, Perelman, Polina L, Proskuryakova, Anastasia A, Serdyukova, Natalia A, Johnson, Warren E, Horin, Petr, Corander, Jukka, Murphy, David, Burger, Pamela A
Published in Molecular ecology resources

For all audiences: Incorporating immature stages into standardised spider inventories has a major impact on the assessment of biodiversity patterns

by Domènech, Marc, Wangensteen, Owen S, Enguídanos, Alba, Malumbres-Olarte, Jagoba, Arnedo, Miquel A
Published in Molecular ecology resources

Metagenomics: A viable tool for reconstructing herbivore diet

by Chua, Physilia Y. S, Crampton-Platt, Alex, Lammers, Youri, Alsos, Inger G, Boessenkool, Sanne, Bohmann, Kristine
Published in Molecular ecology resources

Two different approaches of microbial community structure characterization in riverine epilithic biofilms under multiple stressors conditions: Developing molecular indicators

by Pin, Lorenzo, Eiler, Alexander, Fazi, Stefano, Friberg, Nikolai
Published in Molecular ecology resources

A genome-wide linkage map for the house sparrow (Passer domesticus) provides insights into the evolutionary history of the avian genome

by Hagen, Ingerid Julie, Lien, Sigbjørn, Billing, Anna Maria, Elgvin, Tore Oldeide, Trier, Cassandra Nicole, Niskanen, Alina K, Tarka, Maja, Slate, Jon, Sætre, Glenn-Peter, Jensen, Henrik
Published in Molecular ecology resources

Sequence clustering threshold has little effect on the recovery of microbial community structure

by Botnen, Synnøve Smebye, Davey, Marie Louise, Halvorsen, Rune, Kauserud, Håvard
Published in Molecular ecology resources