Multiple sampling schemes and deep learning improve active learning performance in drug-drug interaction information retrieval analysis from the literature

by Xie, Weixin, Fan, Kunjie, Zhang, Shijun, Li, Lang
Published in Journal of biomedical semantics

Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation

by Schröder, Max, Staehlke, Susanne, Groth, Paul, Nebe, J Barbara, Spors, Sascha, Krüger, Frank
Published in Journal of biomedical semantics

Classifying literature mentions of biological pathogens as experimentally studied using natural language processing

by Jimeno Yepes, Antonio Jose, Verspoor, Karin
Published in Journal of biomedical semantics

Combining string and phonetic similarity matching to identify misspelt names of drugs in medical records written in Portuguese

by Tissot, Hegler, Dobson, Richard
Published in Journal of biomedical semantics

Finding relevant free-text radiology reports at scale with IBM Watson Content Analytics: a feasibility study in the UK NHS

by Piotrkowicz, Alicja, Johnson, Owen, Hall, Geoff
Published in Journal of biomedical semantics

Automated concept and relationship extraction for the semi-automated ontology management (SEAM) system

by Doing-Harris, Kristina, Livnat, Yarden, Meystre, Stephane
Published in Journal of biomedical semantics

Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens

by Smith, Cynthia L, Eppig, Janan T
Published in Journal of biomedical semantics

Combining lexical and context features for automatic ontology extension

by Althubaiti, Sara, Kafkas, Şenay, Abdelhakim, Marwa, Hoehndorf, Robert
Published in Journal of biomedical semantics

Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature

by Binkheder, Samar, Wu, Heng-Yi, Quinney, Sara K, Zhang, Shijun, Zitu, Md. Muntasir, Chiang, Chien-Wei, Wang, Lei, Jones, Josette, Li, Lang
Published in Journal of biomedical semantics

Natural language processing for disease phenotyping in UK primary care records for research: a pilot study in myocardial infarction and death

by Shah, Anoop D, Bailey, Emily, Williams, Tim, Denaxas, Spiros, Dobson, Richard, Hemingway, Harry
Published in Journal of biomedical semantics

DCSO: towards an ontology for machine-actionable data management plans

by Cardoso, João, Castro, Leyla J, Ekaputra, Fajar J, Jacquemot, Marie C, Suchánek, Marek, Miksa, Tomasz, Borbinha, José
Published in Journal of biomedical semantics

Towards achieving semantic interoperability of clinical study data with FHIR

by Leroux, Hugo, Metke-Jimenez, Alejandro, Lawley, Michael J
Published in Journal of biomedical semantics

Pathling: analytics on FHIR

by Grimes, John, Szul, Piotr, Metke-Jimenez, Alejandro, Lawley, Michael, Loi, Kylynn
Published in Journal of biomedical semantics

Analysis of risk factor domains in psychosis patient health records

by Holderness, Eben, Miller, Nicholas, Cawkwell, Philip, Bolton, Kirsten, Meteer, Marie, Pustejovsky, James, Hall, Mei-Hua
Published in Journal of biomedical semantics

Prefrontal fNIRS-based clinical data analysis of brain functions in individuals abusing different types of drugs

by Gu, Xuelin, Yang, Banghua, Gao, Shouwei, Yan, Lin Feng, Xu, Ding, Wang, Wen
Published in Journal of biomedical semantics

FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example

by Vogt, Lars
Published in Journal of biomedical semantics

BioFed: federated query processing over life sciences linked open data

by Hasnain, Ali, Mehmood, Qaiser, Sana E Zainab, Syeda, Saleem, Muhammad, Warren, Jr, Claude, Zehra, Durre, Decker, Stefan, Rebholz-Schuhmann, Dietrich
Published in Journal of biomedical semantics

PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature

by Binkheder, Samar, Wu, Heng-Yi, Quinney, Sara K, Zhang, Shijun, Zitu, Md Muntasir, Chiang, Chien-Wei, Wang, Lei, Jones, Josette, Li, Lang
Published in Journal of biomedical semantics

BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine

by Majewska, Olga, Collins, Charlotte, Baker, Simon, Björne, Jari, Brown, Susan Windisch, Korhonen, Anna, Palmer, Martha
Published in Journal of biomedical semantics

End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach

by Samuel, Sheeba, König-Ries, Birgitta
Published in Journal of biomedical semantics