Integrating phenotype ontologies with PhenomeNET

by Rodríguez-García, Miguel Ángel, Gkoutos, Georgios V, Schofield, Paul N, Hoehndorf, Robert
Published in Journal of biomedical semantics

Context-based refinement of mappings in evolving life science ontologies

by Yamamoto, Victor Eiti, Destro, Juliana Medeiros, dos Reis, Julio Cesar
Published in Journal of biomedical semantics

We are not ready yet: limitations of state-of-the-art disease named entity recognizers

by Kühnel, Lisa, Fluck, Juliane
Published in Journal of biomedical semantics

Defining health data elements under the HL7 development framework for metadata management

by Yang, Zhe, Jiang, Kun, Lou, Miaomiao, Gong, Yang, Zhang, Lili, Liu, Jing, Bao, Xinyu, Liu, Danhong, Yang, Peng
Published in Journal of biomedical semantics

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology

by He, Yongqun, Yu, Hong, Huffman, Anthony, Lin, Asiyah Yu, Natale, Darren A, Beverley, John, Zheng, Ling, Perl, Yehoshua, Wang, Zhigang, Liu, Yingtong, Ong, Edison, Wang, Yang, Huang, Philip, Tran, Long, Du, Jinyang, Shah, Zalan, Shah, Easheta, Desai, Roshan, Huang, Hsin-Hui, Tian, Yujia, Merrell, Eric, Duncan, William D, Arabandi, Sivaram, Schriml, Lynn M, Zheng, Jie, Masci, Anna Maria, Wang, Liwei, Liu, Hongfang, Smaili, Fatima Zohra, Hoehndorf, Robert, Pendlington, Zoë May, Roncaglia, Paola, Ye, Xianwei, Xie, Jiangan, Tang, Yi-Wei, Yang, Xiaolin, Peng, Suyuan, Zhang, Luxia, Chen, Luonan, Hur, Junguk, Omenn, Gilbert S, Athey, Brian, Smith, Barry
Published in Journal of biomedical semantics

Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences

by Norris, Emma, Hastings, Janna, Marques, Marta M, Mutlu, Ailbhe N Finnerty, Zink, Silje, Michie, Susan
Published in Journal of biomedical semantics

Development and validation of the early warning system scores ontology

by Zayas, Cilia E, Whorton, Justin M, Sexton, Kevin W, Mabry, Charles D, Dowland, S. Clint, Brochhausen, Mathias
Published in Journal of biomedical semantics

A multipurpose TNM stage ontology for cancer registries

by Nicholson, Nicholas Charles, Giusti, Francesco, Bettio, Manola, Carvalho, Raquel Negrao, Dimitrova, Nadya, Dyba, Tadeusz, Flego, Manuela, Neamtiu, Luciana, Randi, Giorgia, Martos, Carmen
Published in Journal of biomedical semantics

Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction

by Gazzotti, Raphaël, Faron, Catherine, Gandon, Fabien, Lacroix-Hugues, Virginie, Darmon, David
Published in Journal of biomedical semantics

MedLexSp - a medical lexicon for Spanish medical natural language processing

by Campillos-Llanos, Leonardo
Published in Journal of biomedical semantics

Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments

by Neves, Mariana, Klippert, Antonina, Knöspel, Fanny, Rudeck, Juliane, Stolz, Ailine, Ban, Zsofia, Becker, Markus, Diederich, Kai, Grune, Barbara, Kahnau, Pia, Ohnesorge, Nils, Pucher, Johannes, Schönfelder, Gilbert, Bert, Bettina, Butzke, Daniel
Published in Journal of biomedical semantics

Automatic transparency evaluation for open knowledge extraction systems

by Basereh, Maryam, Caputo, Annalina, Brennan, Rob
Published in Journal of biomedical semantics

Multi-domain knowledge graph embeddings for gene-disease association prediction

by Nunes, Susana, Sousa, Rita T, Pesquita, Catia
Published in Journal of biomedical semantics

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications

by Clark, Tim, Ciccarese, Paolo N, Goble, Carole A
Published in Journal of biomedical semantics

Features of a FAIR vocabulary

by Xu, Fuqi, Juty, Nick, Goble, Carole, Jupp, Simon, Parkinson, Helen, Courtot, Mélanie
Published in Journal of biomedical semantics

An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows

by Penn, Steve, Lomax, Jane, Karlsson, Anneli, Antonucci, Vincent, Zachmann, Carl-Dieter, Kanza, Samantha, Schurer, Stephan, Turner, John
Published in Journal of biomedical semantics

Improving the classification of cardinality phenotypes using collections

by Alghamdi, Sarah M, Hoehndorf, Robert
Published in Journal of biomedical semantics

OAE: The Ontology of Adverse Events

by He, Yongqun, Sarntivijai, Sirarat, Lin, Yu, Xiang, Zuoshuang, Guo, Abra, Zhang, Shelley, Jagannathan, Desikan, Toldo, Luca, Tao, Cui, Smith, Barry
Published in Journal of biomedical semantics

Semantically enabling clinical decision support recommendations

by Seneviratne, Oshani, Das, Amar K, Chari, Shruthi, Agu, Nkechinyere N, Rashid, Sabbir M, McCusker, Jamie, Franklin, Jade S, Qi, Miao, Bennett, Kristin P, Chen, Ching-Hua, Hendler, James A, McGuinness, Deborah L
Published in Journal of biomedical semantics

Constructing a knowledge graph for open government data: the case of Nova Scotia disease datasets

by Rajabi, Enayat, Midha, Rishi, de Souza, Jairo Francisco
Published in Journal of biomedical semantics