Improving the interoperability of biomedical ontologies with compound alignments

by Oliveira, Daniela, Pesquita, Catia
Published in Journal of biomedical semantics

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets

by Du, Jingcheng, Xu, Jun, Song, Hsingyi, Liu, Xiangyu, Tao, Cui
Published in Journal of biomedical semantics

Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

by Harrow, Ian, Jiménez-Ruiz, Ernesto, Splendiani, Andrea, Romacker, Martin, Woollard, Peter, Markel, Scott, Alam-Faruque, Yasmin, Koch, Martin, Malone, James, Waaler, Arild
Published in Journal of biomedical semantics

Text mining brain imaging reports

by Alex, Beatrice, Grover, Claire, Tobin, Richard, Sudlow, Cathie, Mair, Grant, Whiteley, William
Published in Journal of biomedical semantics

Matching biomedical ontologies based on formal concept analysis

by Zhao, Mengyi, Zhang, Songmao, Li, Weizhuo, Chen, Guowei
Published in Journal of biomedical semantics

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment

by Hastings, Janna, Jeliazkova, Nina, Owen, Gareth, Tsiliki, Georgia, Munteanu, Cristian R, Steinbeck, Christoph, Willighagen, Egon
Published in Journal of biomedical semantics

An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD)

by Zhu, Qian, Nguyen, Dac-Trung, Grishagin, Ivan, Southall, Noel, Sid, Eric, Pariser, Anne
Published in Journal of biomedical semantics

Ontological representation, modeling, and analysis of parasite vaccines

by Huffman, Anthony, Zhang, Xumeng, Lanka, Meghana, Zheng, Jie, Masci, Anna Maria, He, Yongqun
Published in Journal of biomedical semantics

Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials

by Witte, Christian, Schmidt, David M, Cimiano, Philipp
Published in Journal of biomedical semantics

Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies

by Kersloot, Martijn G, van Putten, Florentien J P, Abu-Hanna, Ameen, Cornet, Ronald, Arts, Derk L
Published in Journal of biomedical semantics

Tackling the challenges of matching biomedical ontologies

by Faria, Daniel, Pesquita, Catia, Mott, Isabela, Martins, Catarina, Couto, Francisco M, Cruz, Isabel F
Published in Journal of biomedical semantics

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data

by Kaliyaperumal, Rajaram, Wilkinson, Mark D, Moreno, Pablo Alarcón, Benis, Nirupama, Cornet, Ronald, Dos Santos Vieira, Bruna, Dumontier, Michel, Bernabé, César Henrique, Jacobsen, Annika, Le Cornec, Clémence M A, Godoy, Mario Prieto, Queralt-Rosinach, Núria, Schultze Kool, Leo J, Swertz, Morris A, van Damme, Philip, van der Velde, K Joeri, Lalout, Nawel, Zhang, Shuxin, Roos, Marco
Published in Journal of biomedical semantics

Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature

by Arguello Casteleiro, Mercedes, Demetriou, George, Read, Warren, Fernandez Prieto, Maria Jesus, Maroto, Nava, Maseda Fernandez, Diego, Nenadic, Goran, Klein, Julie, Keane, John, Stevens, Robert
Published in Journal of biomedical semantics

Extraction of potential adverse drug events from medical case reports

by Gurulingappa, Harsha, Mateen-Rajput, Abdul, Toldo, Luca
Published in Journal of biomedical semantics

Semantic annotation in biomedicine: the current landscape

by Jovanović, Jelena, Bagheri, Ebrahim
Published in Journal of biomedical semantics

MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank

by Mao, Yuqing, Lu, Zhiyong
Published in Journal of biomedical semantics

Biomedical ontology alignment: an approach based on representation learning

by Kolyvakis, Prodromos, Kalousis, Alexandros, Smith, Barry, Kiritsis, Dimitris
Published in Journal of biomedical semantics

Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung

by Pan, Huaqin, Deutsch, Gail H, Wert, Susan E
Published in Journal of biomedical semantics

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic

by Queralt-Rosinach, Núria, Kaliyaperumal, Rajaram, Bernabé, César H, Long, Qinqin, Joosten, Simone A, van der Wijk, Henk Jan, Flikkenschild, Erik L A, Burger, Kees, Jacobsen, Annika, Mons, Barend, Roos, Marco
Published in Journal of biomedical semantics

Experiences from the anatomy track in the ontology alignment evaluation initiative

by Dragisic, Zlatan, Ivanova, Valentina, Li, Huanyu, Lambrix, Patrick
Published in Journal of biomedical semantics