The bioinformatics toolbox for circRNA discovery and analysis

by Chen, Liang, Wang, Changliang, Sun, Huiyan, Wang, Juexin, Liang, Yanchun, Wang, Yan, Wong, Garry
Published in Briefings in bioinformatics

The EMBL-EBI bioinformatics web and programmatic tools framework

by Li, Weizhong, Cowley, Andrew, Uludag, Mahmut, Gur, Tamer, McWilliam, Hamish, Squizzato, Silvano, Park, Young Mi, Buso, Nicola, Lopez, Rodrigo
Published in Nucleic acids research

Biomarker screening using integrated bioinformatics for the development of "normal-impaired glucose intolerance-type 2 diabetes mellitus"

by Luo, Dongqiang, Gao, Xiaolu, Zhu, Xianqiong, Xu, Jiongbo, Gao, Pengfei, Zou, Jiayi, Fan, Qiaoming, Xu, Ying, Liu, Tian
Published in Scientific reports

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

by Zimmermann, Lukas, Stephens, Andrew, Nam, Seung-Zin, Rau, David, Kübler, Jonas, Lozajic, Marko, Gabler, Felix, Söding, Johannes, Lupas, Andrei N., Alva, Vikram
Published in Journal of molecular biology

Sequence clustering in bioinformatics: an empirical study

by Zou, Quan, Lin, Gang, Jiang, Xingpeng, Liu, Xiangrong, Zeng, Xiangxiang
Published in Briefings in bioinformatics

Bioinformatics for precision oncology

by Singer, Jochen, Irmisch, Anja, Ruscheweyh, Hans-Joachim, Singer, Franziska, Toussaint, Nora C, Levesque, Mitchell P, Stekhoven, Daniel J, Beerenwinkel, Niko
Published in Briefings in bioinformatics

Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis

by Chen, Chen, Hou, Jie, Tanner, John J, Cheng, Jianlin
Published in International journal of molecular sciences

Deep learning-based clustering approaches for bioinformatics

by Karim, Md Rezaul, Beyan, Oya, Zappa, Achille, Costa, Ivan G, Rebholz-Schuhmann, Dietrich, Cochez, Michael, Decker, Stefan
Published in Briefings in bioinformatics

Is "bioinformatics" dead?

by Bourne, Philip E
Published in PLoS biology

PATRIC, the bacterial bioinformatics database and analysis resource

by Wattam, Alice R, Abraham, David, Dalay, Oral, Disz, Terry L, Driscoll, Timothy, Gabbard, Joseph L, Gillespie, Joseph J, Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olson, Robert, Overbeek, Ross, Pusch, Gordon D, Shukla, Maulik, Schulman, Julie, Stevens, Rick L, Sullivan, Daniel E, Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J C, Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W
Published in Nucleic acids research

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

by Davis, James J, Wattam, Alice R, Aziz, Ramy K, Brettin, Thomas, Butler, Ralph, Butler, Rory M, Chlenski, Philippe, Conrad, Neal, Dickerman, Allan, Dietrich, Emily M, Gabbard, Joseph L, Gerdes, Svetlana, Guard, Andrew, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Murphy-Olson, Dan, Nguyen, Marcus, Nordberg, Eric K, Olsen, Gary J, Olson, Robert D, Overbeek, Jamie C, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Warren, Andrew S, Xia, Fangfang, Xie, Dawen, Yoo, Hyunseung, Stevens, Rick
Published in Nucleic acids research

Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users

by Duvaud, Séverine, Gabella, Chiara, Lisacek, Frédérique, Stockinger, Heinz, Ioannidis, Vassilios, Durinx, Christine
Published in Nucleic acids research

csDMA: an improved bioinformatics tool for identifying DNA 6 mA modifications via Chou's 5-step rule

by Liu, Ze, Dong, Wei, Jiang, Wei, He, Zili
Published in Scientific reports

The Carbon Footprint of Bioinformatics

by Grealey, Jason, Lannelongue, Loïc, Saw, Woei-Yuh, Marten, Jonathan, Méric, Guillaume, Ruiz-Carmona, Sergio, Inouye, Michael
Published in Molecular biology and evolution

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines

by Kulkarni, Neha, Alessandrì, Luca, Panero, Riccardo, Arigoni, Maddalena, Olivero, Martina, Ferrero, Giulio, Cordero, Francesca, Beccuti, Marco, Calogero, Raffaele A
Published in BMC bioinformatics

Bioinformatics education--perspectives and challenges out of Africa

by Tastan Bishop, Özlem, Adebiyi, Ezekiel F, Alzohairy, Ahmed M, Everett, Dean, Ghedira, Kais, Ghouila, Amel, Kumuthini, Judit, Mulder, Nicola J, Panji, Sumir, Patterton, Hugh-G
Published in Briefings in bioinformatics

"Bioinformatics: introduction and methods," a bilingual Massive Open Online Course (MOOC) as a new example for global bioinformatics education

by Ding, Yang, Wang, Meng, He, Yao, Ye, Adam Yongxin, Yang, Xiaoxu, Liu, Fenglin, Meng, Yuqi, Gao, Ge, Wei, Liping
Published in PLoS computational biology

Editorial: 21st International Conference on Bioinformatics (InCoB 2022)-accelerating innovation to meet biological challenges: the role of bioinformatics

by Khan, Asif M, Singh, Harpreet, Ranganathan, Shoba, Gojobori, Takashi, Gao, Xin
Published in Frontiers in genetics

Homomorphic Encryption for Machine Learning in Medicine and Bioinformatics

by Wood, Alexander, Najarian, Kayvan, Kahrobaei, Delaram
Published in ACM computing surveys

Graph representation learning in bioinformatics: trends, methods and applications

by Yi, Hai-Cheng, You, Zhu-Hong, Huang, De-Shuang, Kwoh, Chee Keong
Published in Briefings in bioinformatics