Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America

by Liang, Renxing, Lau, Maggie C Y, Saitta, Evan T, Garvin, Zachary K, Onstott, Tullis C
Published in Environmental microbiome

Highly multiplexed spatial mapping of microbial communities

by Shi, Hao, Shi, Qiaojuan, Grodner, Benjamin, Lenz, Joan Sesing, Zipfel, Warren R, Brito, Ilana Lauren, De Vlaminck, Iwijn
Published in Nature (London)

Comparison of prokaryotes between Mount Everest and the Mariana Trench

by Liu, Yongqin, Zhang, Zhihao, Ji, Mukan, Hu, Aoran, Wang, Jing, Jing, Hongmei, Liu, Keshao, Xiao, Xiang, Zhao, Weishu
Published in Microbiome

Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools

by Rotimi, Adeola M, Pierneef, Rian, Reva, Oleg N
Published in BMC bioinformatics

Toward Characterizing Environmental Sources of Non-tuberculous Mycobacteria (NTM) at the Species Level: A Tutorial Review of NTM Phylogeny and Phylogenetic Classification

by Zhang, Lin, Lin, Tzu-Yu, Liu, Wen-Tso, Ling, Fangqiong
Published in ACS Environmental Au

Advancement of Metatranscriptomics towards Productive Agriculture and Sustainable Environment: A Review

by Sharuddin, Siti Suhailah, Ramli, Norhayati, Yusoff, Mohd Zulkhairi Mohd, Muhammad, Nor Azlan Nor, Ho, Li Sim, Maeda, Toshinari
Published in International journal of molecular sciences

Uncovering multi-faceted taxonomic and functional diversity of soil bacteriomes in tropical Southeast Asian countries

by Likhitrattanapisal, Somsak, Siriarchawatana, Paopit, Seesang, Mintra, Chunhametha, Suwanee, Boonsin, Worawongsin, Phithakrotchanakoon, Chitwadee, Kitikhun, Supattra, Eurwilaichitr, Lily, Ingsriswang, Supawadee
Published in Scientific reports

Embracing Ambiguity in the Taxonomic Classification of Microbiome Sequencing Data

by Shah, Nidhi, Meisel, Jacquelyn S., Pop, Mihai
Published in Frontiers in genetics

Quantitative Comparison of Abundance Structures of Generalized Communities: From B-Cell Receptor Repertoires to Microbiomes

by Saeedghalati, Mohammadkarim, Farahpour, Farnoush, Budeus, Bettina, Lange, Anja, Westendorf, Astrid M, Seifert, Marc, Küppers, Ralf, Hoffmann, Daniel
Published in PLoS computational biology

IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

by Murali, Adithya, Bhargava, Aniruddha, Wright, Erik S
Published in Microbiome

Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing

by Lind, Abigail L, Pollard, Katherine S
Published in Microbiome

Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species

by Maltseva, Arina L, Varfolomeeva, Marina A, Gafarova, Elizaveta R, Panova, Marina A Z, Mikhailova, Natalia A, Granovitch, Andrei I
Published in PloS one

Association of Bacteroides acidifaciens relative abundance with high-fibre diet-associated radiosensitisation

by Then, Chee Kin, Paillas, Salome, Wang, Xuedan, Hampson, Alix, Kiltie, Anne E
Published in BMC biology

The association between greenery type and gut microbiome in schizophrenia: did all greenspaces play the equivalent role?

by Wei, Ning, Wang, Shusi, Li, Xuanxuan, Pan, Rubing, Yi, Weizhuo, Song, Jian, Liu, Li, Liu, Jintao, Yuan, Jiajun, Song, Rong, Cheng, Jian, Su, Hong
Published in Environmental science and pollution research international

NIAID, NIEHS, NHLBI, and MCAN Workshop Report: The indoor environment and childhood asthma—implications for home environmental intervention in asthma prevention and management

by Gold, Diane R., MD, MPH, Adamkiewicz, Gary, PhD, MPH, Arshad, Syed Hasan, DM, Celedón, Juan C., MD, DrPH, Chapman, Martin D., PhD, Chew, Ginger L., ScD, Cook, Donald N., PhD, Custovic, Adnan, MD, PhD, Gehring, Ulrike, PhD, Gern, James E., MD, Johnson, Christine C., PhD, MPH, Kennedy, Suzanne, PhD, Koutrakis, Petros, PhD, Leaderer, Brian, PhD, MPH, Mitchell, Herman, PhD, Litonjua, Augusto A., MD, MPH, Mueller, Geoffrey A., PhD, O'Connor, George T., MD, MS, Ownby, Dennis, MD, Phipatanakul, Wanda, MD, MS, Persky, Victoria, MD, Perzanowski, Matthew S., PhD, Ramsey, Clare D., MD, MSc, FRCPC, Salo, Päivi M., MS, PhD, Schwaninger, Julie M., MS, Sordillo, Joanne E., ScD, Spira, Avrum, MD, MSc, MSc, Suglia, Shakira F., ScD, Togias, Alkis, MD, Zeldin, Darryl C., MD, Matsui, Elizabeth C., MD, MHS
Published in Journal of allergy and clinical immunology

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

by Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J, Thompson, Kelsey N, Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D, Thomas, Andrew Maltez, Nickols, William A, Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E, Spector, Tim D, Franzosa, Eric A, Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola
Published in Nature biotechnology

Harnessing microbiome‐based biotechnologies for sustainable mitigation of nitrous oxide emissions

by Hu, Hang‐Wei, He, Ji‐Zheng, Singh, Brajesh K.
Published in Microbial biotechnology

Tree-aggregated predictive modeling of microbiome data

by Bien, Jacob, Yan, Xiaohan, Simpson, Léo, Müller, Christian L
Published in Scientific reports

Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

by Leonard, Maureen M, Karathia, Hiren, Pujolassos, Meritxell, Troisi, Jacopo, Valitutti, Francesco, Subramanian, Poorani, Camhi, Stephanie, Kenyon, Victoria, Colucci, Angelo, Serena, Gloria, Cucchiara, Salvatore, Montuori, Monica, Malamisura, Basilio, Francavilla, Ruggiero, Elli, Luca, Fanelli, Brian, Colwell, Rita, Hasan, Nur, Zomorrodi, Ali R, Fasano, Alessio
Published in Microbiome

Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors

by Park, Ju-Hyeong, Lemons, Angela R, Roseman, Jerry, Green, Brett J, Cox-Ganser, Jean M
Published in Microbiome