Transcriptomic effects of rs4845604, an IBD and allergy-associated RORC variant, in stimulated ex vivo CD4+ T cells

by Wilson, Paul A, Santos Franco, Sara, He, Liu, Galwey, Nicholas W, Meakin, Jackie, McIntyre, Rebecca, McHugh, Simon M, Nolan, Michael A, Spain, Sarah L, Carlson, Thaddeus, Lobera, Mercedes, Rubio, Justin P, Davis, Bill, McCarthy, Linda C
Published in PloS one

ZNF117 regulates glioblastoma stem cell differentiation towards oligodendroglial lineage

by Liu, Jun, Wang, Xiaoying, Chen, Ann T, Gao, Xingchun, Himes, Benjamin T, Zhang, Hongyi, Chen, Zeming, Wang, Jianhui, Sheu, Wendy C, Deng, Gang, Xiao, Yang, Zou, Pan, Zhang, Shenqi, Liu, Fuyao, Zhu, Yong, Fan, Rong, Patel, Toral R, Saltzman, W Mark, Zhou, Jiangbing
Published in Nature communications

Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development

by Zhou, Tao, Li, Ning, Jin, Yulin, Zeng, Qifan, Prabowo, Wendy, Liu, Yang, Tian, Changxu, Bao, Lisui, Liu, Shikai, Yuan, Zihao, Fu, Qiang, Gao, Sen, Gao, Dongya, Dunham, Rex, Shubin, Neil H., Liu, Zhanjiang
Published in Proceedings of the National Academy of Sciences - PNAS

Exome sequencing and characterization of 49,960 individuals in the UK Biobank

by Van Hout, Cristopher V, Tachmazidou, Ioanna, Backman, Joshua D, Hoffman, Joshua D, Liu, Daren, Pandey, Ashutosh K, Gonzaga-Jauregui, Claudia, Khalid, Shareef, Ye, Bin, Banerjee, Nilanjana, Li, Alexander H, O'Dushlaine, Colm, Marcketta, Anthony, Staples, Jeffrey, Schurmann, Claudia, Hawes, Alicia, Maxwell, Evan, Barnard, Leland, Lopez, Alexander, Penn, John, Habegger, Lukas, Blumenfeld, Andrew L, Bai, Xiaodong, O'Keeffe, Sean, Yadav, Ashish, Praveen, Kavita, Jones, Marcus, Salerno, William J, Chung, Wendy K, Surakka, Ida, Willer, Cristen J, Hveem, Kristian, Leader, Joseph B, Carey, David J, Ledbetter, David H, Cardon, Lon, Yancopoulos, George D, Economides, Aris, Coppola, Giovanni, Shuldiner, Alan R, Balasubramanian, Suganthi, Cantor, Michael, Nelson, Matthew R, Whittaker, John, Reid, Jeffrey G, Marchini, Jonathan, Overton, John D, Scott, Robert A, Abecasis, Gonçalo R, Yerges-Armstrong, Laura, Baras, Aris
Published in Nature (London)

Technical reproducibility of genotyping SNP arrays used in genome-wide association studies

by Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D, Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G, Vega, Silvia C, Lin, Simon M, Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D, Goodsaid, Federico, Tong, Weida, Shi, Leming
Published in PloS one

Low-frequency variation near common germline susceptibility loci are associated with risk of Ewing sarcoma

by Lin, Shu-Hong, Sampson, Joshua N., Grünewald, Thomas G. P., Surdez, Didier, Reynaud, Stephanie, Mirabeau, Olivier, Karlins, Eric, Rubio, Rebeca Alba, Zaidi, Sakina, Grossetête-Lalami, Sandrine, Ballet, Stelly, Lapouble, Eve, Laurence, Valérie, Michon, Jean, Pierron, Gaelle, Kovar, Heinrich, Kontny, Udo, González-Neira, Anna, Alonso, Javier, Patino-Garcia, Ana, Corradini, Nadège, Bérard, Perrine Marec, Miller, Jeremy, Freedman, Neal D., Rothman, Nathaniel, Carter, Brian D., Dagnall, Casey L., Burdett, Laurie, Jones, Kristine, Manning, Michelle, Wyatt, Kathleen, Zhou, Weiyin, Yeager, Meredith, Cox, David G., Hoover, Robert N., Khan, Javed, Armstrong, Gregory T., Leisenring, Wendy M., Bhatia, Smita, Robison, Leslie L., Kulozik, Andreas E., Kriebel, Jennifer, Meitinger, Thomas, Metzler, Markus, Krumbholz, Manuela, Hartmann, Wolfgang, Strauch, Konstantin, Kirchner, Thomas, Dirksen, Uta, Mirabello, Lisa, Tucker, Margaret A., Tirode, Franck, Morton, Lindsay M., Chanock, Stephen J., Delattre, Olivier, Machiela, Mitchell J.
Published in PloS one

Integrated genomic characterization of endometrial carcinoma

by Kandoth, Cyriac, Schultz, Nikolaus, Cherniack, Andrew D, Akbani, Rehan, Liu, Yuexin, Shen, Hui, Robertson, A Gordon, Pashtan, Itai, Shen, Ronglai, Benz, Christopher C, Yau, Christina, Laird, Peter W, Ding, Li, Zhang, Wei, Mills, Gordon B, Kucherlapati, Raju, Mardis, Elaine R, Levine, Douglas A
Published in Nature (London)

Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program

by Taliun, Daniel, Kessler, Michael D, Carlson, Jedidiah, Taliun, Sarah A Gagliano, Kang, Hyun Min, Tian, Xiaowen, Browning, Brian L, Clarke, Wayne E, Loesch, Douglas P, Shetty, Amol C, Blackwell, Thomas W, Smith, Albert V, Liu, Xiaoming, Conomos, Matthew P, Bobo, Dean M, Aguet, François, Arking, Dan E, Aslibekyan, Stella, Auer, Paul L, Barnard, John, Barr, R Graham, Barwick, Lucas, Becker, Lewis C, Bielak, Lawrence F, Bowden, Donald W, Brody, Jennifer A, Burchard, Esteban G, Cade, Brian E, Chasman, Daniel I, Chen, Yii-Der Ida, Choi, Seung Hoan, Chung, Mina K, Correa, Adolfo, Curran, Joanne E, Custer, Brian, Daya, Michelle, DeMeo, Dawn L, Ellinor, Patrick T, Eng, Celeste, Fingerlin, Tasha, Forer, Lukas, Fullerton, Stephanie M, Germer, Soren, Gottlieb, Daniel J, Guo, Xiuqing, He, Jiang, Heckbert, Susan R, Kelly, Tanika, Kelly, Shannon, Kenny, Eimear E, Klemmer, Robert, Konkle, Barbara A, Kooperberg, Charles, Köttgen, Anna, Lasky-Su, Jessica, Levy, Daniel, Lin, Xihong, Liu, Chunyu, Lubitz, Steven A, Mak, Angel C Y, Manichaikul, Ani, Manning, Alisa K, Mathias, Rasika A, McManus, David D, Meigs, James B, Meyers, Deborah A, Montasser, May E, Montgomery, Courtney, Morrison, Alanna C, Murabito, Joanne M, Nelson, Sarah C, North, Kari E, Peloso, Gina M, Peyser, Patricia A, Post, Wendy S, Rao, D C, Redline, Susan, Roden, Dan, Sarnowski, Chloé, Schwartz, David A, Sheehan, Vivien A, Smith, Nicholas L, Smith, Jennifer A, Sotoodehnia, Nona, Tang, Weihong, Taylor, Kent D, Telen, Marilyn, Tracy, Russell P, Vasan, Ramachandran S, Viaud-Martinez, Karine A, Vrieze, Scott, Weeks, Daniel E, Weiss, Scott T, Gan, Weiniu, Nickerson, Deborah A, Browning, Sharon R, Wilson, James G, Laurie, Cathy C, Hernandez, Ryan D, Abecasis, Gonçalo R
Published in Nature (London)

Powerful gene-based testing by integrating long-range chromatin interactions and knockoff genotypes

by Ma, Shiyang, Dalgleish, James, Lee, Justin, Wang, Chen, Liu, Linxi, Gill, Richard, Buxbaum, Joseph D, Chung, Wendy K, Aschard, Hugues, Silverman, Edwin K, Cho, Michael H, He, Zihuai, Ionita-Laza, Iuliana
Published in Proceedings of the National Academy of Sciences - PNAS

The Functional Study of the N-Terminal Region of Influenza B Virus Nucleoprotein

by Liu, Ming, Lam, Mandy Ka-Han, Zhang, Qinfen, Elderfield, Ruth, Barclay, Wendy S, Shaw, Pang-Chui
Published in PloS one

Analytical validation of a multi-cancer early detection test with cancer signal origin using a cell-free DNA-based targeted methylation assay

by Alexander, Gregory E, Lin, Wendy, Ortega, Fabian E, Ramaiah, Madhuvanthi, Jung, Byoungsok, Ji, Lijuan, Revenkova, Ekaterina, Shah, Payal, Croisetiere, Christian, Berman, Jennifer R, Eubank, Lane, Naik, Gunjan, Brooks, Jacqueline, Mich, Andrea, Shojaee, Seyedmehdi, Ronaghi, Neda, Chawla, Hemanshi, Hou, Xinyi, Liu, Qinwen, Yakym, Christopher-James A V, Moradi, Patriss Wais, Halks-Miller, Meredith, Aravanis, Alexander M, Parpart-Li, Sonya, Hunkapiller, Nathan
Published in PloS one

Polygenic scores for smoking and educational attainment have independent influences on academic success and adjustment in adolescence and educational attainment in adulthood

by Hicks, Brian M, Clark, D Angus, Deak, Joseph D, Schaefer, Jonathan D, Liu, Mengzhen, Jang, Seonkyeong, Durbin, C Emily, Johnson, Wendy, Wilson, Sylia, Iacono, William G, McGue, Matt, Vrieze, Scott I
Published in PloS one

Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon

by Cui, Yu, Lee, Mi Yeon, Huo, Naxin, Bragg, Jennifer, Yan, Lijie, Yuan, Cheng, Li, Cui, Holditch, Sara J, Xie, Jingzhong, Luo, Ming-Cheng, Li, Dawei, Yu, Jialin, Martin, Joel, Schackwitz, Wendy, Gu, Yong Qiang, Vogel, John P, Jackson, Andrew O, Liu, Zhiyong, Garvin, David F
Published in PloS one

Genetic diversity fuels gene discovery for tobacco and alcohol use

by Jang, Seon-Kyeong, Liu, Mengzhen, Gao, Shuang, Jiang, Yu, Khunsriraksakul, Chachrit, Akiyama, Masato, Aliev, Fazil, Ashley-Koch, Allison E, Benjamin, Emelia J, Bis, Joshua C, Bjornsdottir, Gyda, Blangero, John, Boardman, Jason D, Boerwinkle, Eric, Boomsma, Dorret I, Boorgula, Meher Preethi, Bowden, Donald W, Brody, Jennifer A, Cade, Brian E, Chen, Yii-Der Ida, Chen, Zhengming, Cheng, Iona, Choquet, Hélène, Cucca, Francesco, Docherty, Anna R, Duggirala, Ravindranath, Esko, Tõnu, Faul, Jessica D, Fernandes Silva, Lilian, Fiorillo, Edoardo, Gharib, Sina A, Gieger, Christian, Gillespie, Nathan, Gu, Charles C, Guo, Xiuqing, Haller, Toomas, He, Jiang, Hidalgo, Bertha, Hokanson, John E, Hopfer, Christian, Hottenga, JoukeJan, Huang, Hongyan, Iacono, William, Kamatani, Yoichiro, Kaplan, Robert C, Kaprio, Jaakko, Kraft, Peter, Kuusisto, Johanna, Lasky-Su, Jessica, Lee, Wen-Jane, Lee, James J, Levy, Daniel, Liu, Chunyu, Lloyd-Jones, Donald M, Lutz, Sharon M, Mägi, Reedik, Martin, Nicholas G, Medland, Sarah E, Metspalu, Andres, Mitchell, Braxton D, Moll, Matthew, Montasser, May E, Morrison, Alanna C, North, Kari E, Palmer, Nicholette D, Palviainen, Teemu, Park, S Lani, Peters, Ulrike, Redline, Susan, Reed, Robert M, Roan, Carol, Rotter, Jerome I, Rueschman, Michael N, Saccone, Nancy L, Shadyab, Aladdin H, Sotoodehnia, Nona, Stefansson, Hreinn, Stefansson, Kari, Sun, Xiao, Syed, Moin, Tal-Singer, Ruth, Taylor, Amy E, Taylor, Kent D, Thai, Khanh K, Walters, Robin G, White, Wendy B, Whitfield, John B, Willer, Cristen J, Xu, Huichun, Yanek, Lisa R, Yin, Jie, Yu, Bing, Zhou, Wei, Zöllner, Sebastian, Batini, Chiara, Bierut, Laura J, Hancock, Dana B, Thorgeirsson, Thorgeir E, Liu, Dajiang J, Vrieze, Scott
Published in Nature (London)

The HIV Genomic Incidence Assay Meets False Recency Rate and Mean Duration of Recency Infection Performance Standards

by Park, Sung Yong, Love, Tanzy M T, Reynell, Lucy, Yu, Carl, Kang, Tina Manzhu, Anastos, Kathryn, DeHovitz, Jack, Liu, Chenglong, Kober, Kord M, Cohen, Mardge, Mack, Wendy J, Lee, Ha Youn
Published in Scientific reports

Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

by Elsik, Christine G, Tellam, Ross L, Worley, Kim C
Published in Science (American Association for the Advancement of Science)

Drug-Gene Interactions of Antihypertensive Medications and Risk of Incident Cardiovascular Disease: A Pharmacogenomics Study from the CHARGE Consortium

by Bis, Joshua C, Sitlani, Colleen, Irvin, Ryan, Avery, Christy L, Smith, Albert Vernon, Sun, Fangui, Evans, Daniel S, Musani, Solomon K, Li, Xiaohui, Trompet, Stella, Krijthe, Bouwe P, Harris, Tamara B, Quibrera, P Miguel, Brody, Jennifer A, Demissie, Serkalem, Davis, Barry R, Wiggins, Kerri L, Tranah, Gregory J, Lange, Leslie A, Sotoodehnia, Nona, Stott, David J, Franco, Oscar H, Launer, Lenore J, Stürmer, Til, Taylor, Kent D, Cupples, L Adrienne, Eckfeldt, John H, Smith, Nicholas L, Liu, Yongmei, Wilson, James G, Heckbert, Susan R, Buckley, Brendan M, Ikram, M Arfan, Boerwinkle, Eric, Chen, Yii-Der Ida, de Craen, Anton J M, Uitterlinden, Andre G, Rotter, Jerome I, Ford, Ian, Hofman, Albert, Sattar, Naveed, Slagboom, P Eline, Westendorp, Rudi G J, Gudnason, Vilmundur, Vasan, Ramachandran S, Lumley, Thomas, Cummings, Steven R, Taylor, Jr, Herman A, Post, Wendy, Jukema, J Wouter, Stricker, Bruno H, Whitsel, Eric A, Psaty, Bruce M, Arnett, Donna
Published in PloS one

MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses

by Devine, Jay, Vidal-García, Marta, Liu, Wei, Neves, Amanda, Lo Vercio, Lucas D, Green, Rebecca M, Richbourg, Heather A, Marchini, Marta, Unger, Colton M, Nickle, Audrey C, Radford, Bethany, Young, Nathan M, Gonzalez, Paula N, Schuler, Robert E, Bugacov, Alejandro, Rolian, Campbell, Percival, Christopher J, Williams, Trevor, Niswander, Lee, Calof, Anne L, Lander, Arthur D, Visel, Axel, Jirik, Frank R, Cheverud, James M, Klein, Ophir D, Birnbaum, Ramon Y, Merrill, Amy E, Ackermann, Rebecca R, Graf, Daniel, Hemberger, Myriam, Dean, Wendy, Forkert, Nils D, Murray, Stephen A, Westerberg, Henrik, Marcucio, Ralph S, Hallgrímsson, Benedikt
Published in Scientific data